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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1369#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence
[GTGAATTTCCTTCAGAGACAGAGAAATTCTGTTCTGTATTTAAAGAAGAGGAAAATCAGCAACAATGACGAAGTCAGTCGAGCAGCGCTCAGTTTTCGACTTGTGTCCAAATGATGAAGTTCTGATCGGGCTGGCGAAGGTAAACTCAGCCCTGCAAACTCTCTGCAACACGGCTACAGTCCCTGCAGTTCCGAAAGCGATACAACATGAAAGACAACGGGAATCCAGCCTGTTAAGAGAAGTGTCAGACAAGATGGTGTGCTTAGCCTGCAGATGCACCTTTACTAATCGTGAAGATCAGGTGGAACACTACAAGCTCGATTGGCATCGTTTCAATTTGAAACAAAAGATGCTGGGAACGTCGCCAGTTACAGCAGAAGAGTTTGAGAAGAAGACTGGAGAGGTTATTGATTTGTAGGTGACGTGCCAAGTATCTCGGGATCGGAGTCTGATAGTGAGGAATGTGCTGACAGCGACGACGGCAATGCTGCGGATAGCGAGGCCTCACCTGAAAGCTGTTTGATTATGGGCCGGCGTTCCACCAAGCTTATTTTCCAGAACTTAGCAGGACAGTATCTATCAGTGCATCGCTGCATCCTGCAGGGCAAGTCTGCTGA]
[+] EMBL BU807484 [GTGAATTTCCTTCAGAGACAGAGAAATTCTGTTCTGTATTTAAAGAAGAGGAAAATCAGCAACAATGACGAAGTCAGTCGAGCAGCGCTCAGTTTTCGACTTGTGTCCAAATGATGAAGTTCTGATCGGGCTGGCGAAGGTAAACTCAGCCCTGCAAACTCTCTGCAACACGGCTACAGTCCCTGCAGTTCCGAAAGCGATACAACATGAAAGACAACGGGAATCCAGCCTGTTAAGAGAAGTGTCAGACAAGATGGTGTGCTTAGCCTGCAGATGCACCTTTACTAATCGTGAAGATCAGGTGGAACACTACAAGCTCGATTGGCATCGTTTCAATTTGAAACAAAAGATGCTGGGAACGTCGCCAGTTACAGCAGAAGAGTTTGAGAAGAAGACTGGAGAGGTTATTGATTTGTAGGTGACGTGCCAAGTATCTCGGGATCGGAGTCTGATAGTGAGGAATGTGCTGACAGCGACGACGGCAATGCTGCGGATAGCGAGGCCTCACCTGAAAGCTGTTTGATTATGGGCCGGCGTTCCACCAAGCTTATTTTCCAGAACTTAGCAGGACAGTATCTATCAGTGCATCGCTGCATCCTGCAGGGCAAGTCTGCTGA]
consensusID : consensus_1369#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence
[CTTTCAATAGCCTCTAGTGAATTTCCTTCAGAGACAGAGAAATTCTGTTCTGTATTTAAAGAAGAGGAAAATCAGCAACAATGACGAAGTCAGTCGAGCAGCGCTCAGTTTTCGACTTGTGTCCAAATGATGAAGTTCTGATCGGGCTGGCGAAGGTAAACTCAGCCCTGCAAACTCTCTGCAACACGGCTACAGTCCCTGCAGTTCCGAAAGCGATACAACATGAAAGACAACGGGAATCCAGCCTGTTAAGAGAAGTGTCAGACAAGATGGTGTGCTTAGCCTGCAGATGCACCTTTACTAATCGTGAAGATCAGGTGGAACACTACAAGCTCGATTGGCATCGTTTCAATTTGAAACAAAAGATGCTGGGAACGTCGCCAGTTACAGCAGAAGAGTTTGAGAAGAAGACTGGAGAGGGTGACGTGTCAAGTATCTCGGGATCGGAGTCTGATAGTGAGGAATGTGCTGACAGCGACGACGGCAATGCTGCGGATAGCGAGGCCTCACCTGAAAGCTGTTTGATT]
[+] EMBL CA589746 [CTTTCAATAGCCTCTAGTGAATTTCCTTCAGAGACAGAGAAATTCTGTTCTGTATTTAAAGAAGAGGAAAATCAGCAACAATGACGAAGTCAGTCGAGCAGCGCTCAGTTTTCGACTTGTGTCCAAATGATGAAGTTCTGATCGGGCTGGCGAAGGTAAACTCAGCCCTGCAAACTCTCTGCAACACGGCTACAGTCCCTGCAGTTCCGAAAGCGATACAACATGAAAGACAACGGGAATCCAGCCTGTTAAGAGAAGTGTCAGACAAGATGGTGTGCTTAGCCTGCAGATGCACCTTTACTAATCGTGAAGATCAGGTGGAACACTACAAGCTCGATTGGCATCGTTTCAATTTGAAACAAAAGATGCTGGGAACGTCGCCAGTTACAGCAGAAGAGTTTGAGAAGAAGACTGGAGAGGGTGACGTGTCAAGTATCTCGGGATCGGAGTCTGATAGTGAGGAATGTGCTGACAGCGACGACGGCAATGCTGCGGATAGCGAGGCCTCACCTGAAAGCTGTTTGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1369#0 ----------------GTGAATTTCCTTCAGAGACAGAGAAATTCTGTTCTGTATTTAAA 44
consensus_1369#1 CTTTCAATAGCCTCTAGTGAATTTCCTTCAGAGACAGAGAAATTCTGTTCTGTATTTAAA 60
********************************************
consensus_1369#0 GAAGAGGAAAATCAGCAACAATGACGAAGTCAGTCGAGCAGCGCTCAGTTTTCGACTTGT 104
consensus_1369#1 GAAGAGGAAAATCAGCAACAATGACGAAGTCAGTCGAGCAGCGCTCAGTTTTCGACTTGT 120
************************************************************
consensus_1369#0 GTCCAAATGATGAAGTTCTGATCGGGCTGGCGAAGGTAAACTCAGCCCTGCAAACTCTCT 164
consensus_1369#1 GTCCAAATGATGAAGTTCTGATCGGGCTGGCGAAGGTAAACTCAGCCCTGCAAACTCTCT 180
************************************************************
consensus_1369#0 GCAACACGGCTACAGTCCCTGCAGTTCCGAAAGCGATACAACATGAAAGACAACGGGAAT 224
consensus_1369#1 GCAACACGGCTACAGTCCCTGCAGTTCCGAAAGCGATACAACATGAAAGACAACGGGAAT 240
************************************************************
consensus_1369#0 CCAGCCTGTTAAGAGAAGTGTCAGACAAGATGGTGTGCTTAGCCTGCAGATGCACCTTTA 284
consensus_1369#1 CCAGCCTGTTAAGAGAAGTGTCAGACAAGATGGTGTGCTTAGCCTGCAGATGCACCTTTA 300
************************************************************
consensus_1369#0 CTAATCGTGAAGATCAGGTGGAACACTACAAGCTCGATTGGCATCGTTTCAATTTGAAAC 344
consensus_1369#1 CTAATCGTGAAGATCAGGTGGAACACTACAAGCTCGATTGGCATCGTTTCAATTTGAAAC 360
************************************************************
consensus_1369#0 AAAAGATGCTGGGAACGTCGCCAGTTACAGCAGAAGAGTTTGAGAAGAAGACTGGAGAGG 404
consensus_1369#1 AAAAGATGCTGGGAACGTCGCCAGTTACAGCAGAAGAGTTTGAGAAGAAGACTGGAGAGG 420
************************************************************
consensus_1369#0 TTATTGATTTGTAGGTGACGTGCCAAGTATCTCGGGATCGGAGTCTGATAGTGAGGAATG 464
consensus_1369#1 --------------GTGACGTGTCAAGTATCTCGGGATCGGAGTCTGATAGTGAGGAATG 466
******** *************************************
consensus_1369#0 TGCTGACAGCGACGACGGCAATGCTGCGGATAGCGAGGCCTCACCTGAAAGCTGTTTGAT 524
consensus_1369#1 TGCTGACAGCGACGACGGCAATGCTGCGGATAGCGAGGCCTCACCTGAAAGCTGTTTGAT 526
************************************************************
consensus_1369#0 TATGGGCCGGCGTTCCACCAAGCTTATTTTCCAGAACTTAGCAGGACAGTATCTATCAGT 584
consensus_1369#1 T----------------------------------------------------------- 527
*
consensus_1369#0 GCATCGCTGCATCCTGCAGGGCAAGTCTGCTGA 617
consensus_1369#1 ---------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |