cluster # 1377

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Takifugu rubripes
cluster # 1377 cluster # 1377 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1377#0 length = 404 sequences # 1

consensus_1377#1 length = 314 sequences # 1

consensusID : consensus_1377#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 404
fasta sequence

                              [GAGGGAGGAGGGAGGAGGGCTGGGTGTGTGTGCAGGGCGAGTGTATTCACCTGATGTGGTCAGGGTATCCGTACATGCCTGTAGAGTCCCACTGCTCTATCGTGTGGCCTGAACCAAGACCCCAAAGGTGCTGCAAGACATTTTAACTTGAAGAGCCTGCAGAGCTGAGCAGCCTGAAGAGCTGAGCAACCTAAAGAGCCGAGCAGCCTGAAGAGCTGAGCAGCCTAAAGAGCTGAGCAGCCTAAAGAGCTGAGCAGCCTGAAGAGCTGAGCAACCTAAAGAGCTGAGCAACCTAAACCATGTTTCTCTTCCCCCTCATCTTCATCCATCCTCAGGTTTCCAGCTCTGAGTGTTATCTGGAGATCTGCTGCAGTCCCACTTCTGTTGTGAGCTCTACAAAAGAT]

[+] EMBL BU807575             [GAGGGAGGAGGGAGGAGGGCTGGGTGTGTGTGCAGGGCGAGTGTATTCACCTGATGTGGTCAGGGTATCCGTACATGCCTGTAGAGTCCCACTGCTCTATCGTGTGGCCTGAACCAAGACCCCAAAGGTGCTGCAAGACATTTTAACTTGAAGAGCCTGCAGAGCTGAGCAGCCTGAAGAGCTGAGCAACCTAAAGAGCCGAGCAGCCTGAAGAGCTGAGCAGCCTAAAGAGCTGAGCAGCCTAAAGAGCTGAGCAGCCTGAAGAGCTGAGCAACCTAAAGAGCTGAGCAACCTAAACCATGTTTCTCTTCCCCCTCATCTTCATCCATCCTCAGGTTTCCAGCTCTGAGTGTTATCTGGAGATCTGCTGCAGTCCCACTTCTGTTGTGAGCTCTACAAAAGAT]




>consensus_1377#0
GAGGGAGGAGGGAGGAGGGCTGGGTGTGTGTGCAGGGCGAGTGTATTCACCTGATGTGGT
CAGGGTATCCGTACATGCCTGTAGAGTCCCACTGCTCTATCGTGTGGCCTGAACCAAGAC
CCCAAAGGTGCTGCAAGACATTTTAACTTGAAGAGCCTGCAGAGCTGAGCAGCCTGAAGA
GCTGAGCAACCTAAAGAGCCGAGCAGCCTGAAGAGCTGAGCAGCCTAAAGAGCTGAGCAG
CCTAAAGAGCTGAGCAGCCTGAAGAGCTGAGCAACCTAAAGAGCTGAGCAACCTAAACCA
TGTTTCTCTTCCCCCTCATCTTCATCCATCCTCAGGTTTCCAGCTCTGAGTGTTATCTGG
AGATCTGCTGCAGTCCCACTTCTGTTGTGAGCTCTACAAAAGAT

consensusID : consensus_1377#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 314
fasta sequence

                              [ATGCTGCACGGCCCCGCTGGGGGACGCCAGGAGGGCTGGGTGTGTGTGCAGGGCGAGTGTATTCACCTGATGTGGTCAGGGTATCCGTACATGCCTGTAGAGTCCCACTGCTCTATCGTGTGGCCTGAACCAAGACCCCAAAGGTTTCCAGCTCTGAGTGTTATCTGGAGATCTGCTGCAGTCCCACTTCTGTTGTGAGCTCTACAAAAGATCTCCTATCTCCATCCACCANATTCCAGTCTGGTTCTCAGGCAAAGAAGCAGACGTATCTGAGGCTTTCATCAAGCTCCCTACAGCGAGTTCATGGAGGAGGC]

[+] EMBL FR0060432            [ATGCTGCACGGCCCCGCTGGGGGACGCCAGGAGGGCTGGGTGTGTGTGCAGGGCGAGTGTATTCACCTGATGTGGTCAGGGTATCCGTACATGCCTGTAGAGTCCCACTGCTCTATCGTGTGGCCTGAACCAAGACCCCAAAGGTTTCCAGCTCTGAGTGTTATCTGGAGATCTGCTGCAGTCCCACTTCTGTTGTGAGCTCTACAAAAGATCTCCTATCTCCATCCACCANATTCCAGTCTGGTTCTCAGGCAAAGAAGCAGACGTATCTGAGGCTTTCATCAAGCTCCCTACAGCGAGTTCATGGAGGAGGC]




>consensus_1377#1
ATGCTGCACGGCCCCGCTGGGGGACGCCAGGAGGGCTGGGTGTGTGTGCAGGGCGAGTGT
ATTCACCTGATGTGGTCAGGGTATCCGTACATGCCTGTAGAGTCCCACTGCTCTATCGTG
TGGCCTGAACCAAGACCCCAAAGGTTTCCAGCTCTGAGTGTTATCTGGAGATCTGCTGCA
GTCCCACTTCTGTTGTGAGCTCTACAAAAGATCTCCTATCTCCATCCACCANATTCCAGT
CTGGTTCTCAGGCAAAGAAGCAGACGTATCTGAGGCTTTCATCAAGCTCCCTACAGCGAG
TTCATGGAGGAGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1377#0      ----------------GAGGGAGGAGGGAGGAGGGCTGGGTGTGTGTGCAGGGCGAGTGT 44
consensus_1377#1      ATGCTGCACGGCCCCGCTGGGGGACGCCAGGAGGGCTGGGTGTGTGTGCAGGGCGAGTGT 60
                                        *** *  *  ********************************

consensus_1377#0      ATTCACCTGATGTGGTCAGGGTATCCGTACATGCCTGTAGAGTCCCACTGCTCTATCGTG 104
consensus_1377#1      ATTCACCTGATGTGGTCAGGGTATCCGTACATGCCTGTAGAGTCCCACTGCTCTATCGTG 120
                      ************************************************************

consensus_1377#0      TGGCCTGAACCAAGACCCCAAAGGTGCTGCAAGAC--ATTTTAACTTGAAGAGCCTGCAG 162
consensus_1377#1      TGGCCTGAACCAAGACCCCAAAGGT-TTCCAGCTCTGAGTGTTATCTGGAGA-TCTGCTG 178
                      *************************  * **   *  * * * *  ** ***  **** *

consensus_1377#0      AGCTGAGCAGCCTGAAGAGCTGAGCAACCTAAAGAGCCGAGCAGCCTGAAGAGCTGAGCA 222
consensus_1377#1      CAGTCCCACTTCTGTTG---TGAGCTCTACAAAAGATCTCCTATCTCCATCCACCA--NA 233
                         *       ***  *   *****     ***    *    * *   *    *     *

consensus_1377#0      GCCTAAAGAGCTGAGCAGCCTAAAGAGCTGAGCAGCCTGAAGAGCTGAGCAACCTAAAGA 282
consensus_1377#1      TTCCAGTCTGGTTCTCAGGCAAAGAAGCAGACGTATCTGAGGCTTTCATCAAGCTCCCTA 293
                        * *    * *   *** * **  *** **     **** *   * * *** **    *

consensus_1377#0      GCTGAGCAACCTAAACCATGTTTCTCTTCCCCCTCATCTTCATCCATCCTCAGGTTTCCA 342
consensus_1377#1      CAGCGAGTTCATGGAGGAGGC--------------------------------------- 314
                               * *  *  * *                                        

consensus_1377#0      GCTCTGAGTGTTATCTGGAGATCTGCTGCAGTCCCACTTCTGTTGTGAGCTCTACAAAAG 402
consensus_1377#1      ------------------------------------------------------------
                                                                                  

consensus_1377#0      AT 404
consensus_1377#1      --

Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)