These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1386#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [CCATGGAAAACTACCTGATTACCTTGGAGGAGCACACGCAGGAAATGCTGTGCAAGCTGCAGTTTGTAGATGTTGTATGTGACGGTCCGGATCACAACAAAGTGTTTAGAGTAAGAGCAGTCATAGATGATCAGGCCTATCCTGAAGCCTTGCAAAAACAAGAAAGAAGCCAAAAAGAAAGCAGCTGAAATCGCCTGGAGAGCCTTGATGCAGGAGCACCGCGACTCTGAAACAACTGAAAATGCAGGACAACGTTCATCGACGCCCAGTCAGGCCCCGATCACTCGGACTAACTATGTGGCCTGGCTTAATGAGCATGGTCAGAAAAACCGAGTGAGCGTAAAATTAGTG] [+] EMBL FR0061908 [CCATGGAAAACTACCTGATTACCTTGGAGGAGCACACGCAGGAAATGCTGTGCAAGCTGCAGTTTGTAGATGTTGTATGTGACGGTCCGGATCACAACAAAGTGTTTAGAGTAAGAGCAGTCATAGATGATCAGGCCTATCCTGAAGCCTTGCAAAAACAAGAAAGAAGCCAAAAAGAAAGCAGCTGAAATCGCCTGGAGAGCCTTGATGCAGGAGCACCGCGACTCTGAAACAACTGAAAATGCAGGACAACGTTCATCGACGCCCAGTCAGGCCCCGATCACTCGGACTAACTATGTGGCCTGGCTTAATGAGCATGGTCAGAAAAACCGAGTGAGCGTAAAATTAGTG] consensusID : consensus_1386#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [AAACCGGCTCAGTTTACAGGATCAAGATGTTGGATGTGACGGTCCTGATCACCTTAAAACGTTTAGAGTAAGAGCAGTCATAGATGATCAGGCCTATCCTGAAGGCCTTGGCAAAAACAAGAAAGAAGCCAAAAAGAAAGCAGCTGAAAATGCCTGGAGAGCCTTGATGCAGGAGCACCGCGACTCTGAAACACAGACTGAAAATGCAGGACAAAGTCCATCGACGCCCAGTCAGGCCCCGATCACTCGGACTAACTTTGTGGCCTGGCTTAATGAGTATGGTCAGAAAAACCGAGTGAGCGTAAAATTAGTGGAGTCAACAAGACCGGGGCTTCGCGGAGC] [+] EMBL FR0059002 [AAACCGGCTCAGTTTACAGGATCAAGATGTTGGATGTGACGGTCCTGATCACCTTAAAACGTTTAGAGTAAGAGCAGTCATAGATGATCAGGCCTATCCTGAAGGCCTTGGCAAAAACAAGAAAGAAGCCAAAAAGAAAGCAGCTGAAAATGCCTGGAGAGCCTTGATGCAGGAGCACCGCGACTCTGAAACACAGACTGAAAATGCAGGACAAAGTCCATCGACGCCCAGTCAGGCCCCGATCACTCGGACTAACTTTGTGGCCTGGCTTAATGAGTATGGTCAGAAAAACCGAGTGAGCGTAAAATTAGTGGAGTCAACAAGACCGGGGCTTCGCGGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1386#0 CCATGGAAAACTACCTGATTACCTTGGAGGAGCACACGCAGGAAATGCTGTGCAAGCTGC 60 consensus_1386#1 -------------------------------------------AAACCGGCTCAGTTTAC 17 ** * * ** * * consensus_1386#0 AGTTTGTAGATGTTGTATGTGACGGTCCGGATCACAACAAAGTGTTTAGAGTAAGAGCAG 120 consensus_1386#1 AGGATCAAGATGTTGGATGTGACGGTCCTGATCACCTTAAAACGTTTAGAGTAAGAGCAG 77 ** * ******** ************ ****** *** ***************** consensus_1386#0 TCATAGATGATCAGGCCTATCCTGAAGCCTT--GCAAAAACAAGAAAGAAGCCAAAAAGA 178 consensus_1386#1 TCATAGATGATCAGGCCTATCCTGAAGGCCTTGGCAAAAACAAGAAAGAAGCCAAAAAGA 137 *************************** * * *************************** consensus_1386#0 AAGCAGCTGAAATCGCCTGGAGAGCCTTGATGCAGGAGCACCGCGACTCTGAAACA---A 235 consensus_1386#1 AAGCAGCTGAAAATGCCTGGAGAGCCTTGATGCAGGAGCACCGCGACTCTGAAACACAGA 197 ************ ****************************************** * consensus_1386#0 CTGAAAATGCAGGACAACGTTCATCGACGCCCAGTCAGGCCCCGATCACTCGGACTAACT 295 consensus_1386#1 CTGAAAATGCAGGACAAAGTCCATCGACGCCCAGTCAGGCCCCGATCACTCGGACTAACT 257 ***************** ** *************************************** consensus_1386#0 ATGTGGCCTGGCTTAATGAGCATGGTCAGAAAAACCGAGTGAGCGTAAAATTAGTG---- 351 consensus_1386#1 TTGTGGCCTGGCTTAATGAGTATGGTCAGAAAAACCGAGTGAGCGTAAAATTAGTGGAGT 317 ******************* *********************************** consensus_1386#0 ------------------------- consensus_1386#1 CAACAAGACCGGGGCTTCGCGGAGC 342 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |