These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1392#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [TGCTCTTTGCCATTTCCCGTTTTGGAACTATACATCGGTGAAGATCCCACGACATCCCGCAAAATGGTTTGGTCGGTATCTTTACTGTTCACATGCTCAACAAAGTCTTTTAACAGTGTTTCCTGTAACATCATCACAGCGGTGTGAGCCGCTCAGCATGTCCGTCATCGGGAGCTGTTTACCCAGAAACAACCCAATGGCTTTCTTCCTTTTTTCCTGTGTCTTTCTGCATGAAACATGAAGCAGGTGGATATTATAAATAAGGAAGAATTAGAAAAAGAAAGGTTTCAAGACCATTACAGAGTCCCCAGCCCAGCCAAAGCCAAGAAGCGAGTGTCATCGGTCAAGAGGAAGGGTTGTCCAGTGGTGGAGGGGGGCTCGAAGCTGCACCGCCAGGCATCCGATGTAGGCCGTGCCCATGACTGCAGCATGGCCAACAAAGAGAACGAGCTGACGTGCTCCGATGACACGCGCAGGAACTGCGGTCTGCCCGTGAACCCTGGAGACGCCCCCAAGAT] [+] EMBL BU807706 [TGCTCTTTGCCATTTCCCGTTTTGGAACTATACATCGGTGAAGATCCCACGACATCCCGCAAAATGGTTTGGTCGGTATCTTTACTGTTCACATGCTCAACAAAGTCTTTTAACAGTGTTTCCTGTAACATCATCACAGCGGTGTGAGCCGCTCAGCATGTCCGTCATCGGGAGCTGTTTACCCAGAAACAACCCAATGGCTTTCTTCCTTTTTTCCTGTGTCTTTCTGCATGAAACATGAAGCAGGTGGATATTATAAATAAGGAAGAATTAGAAAAAGAAAGGTTTCAAGACCATTACAGAGTCCCCAGCCCAGCCAAAGCCAAGAAGCGAGTGTCATCGGTCAAGAGGAAGGGTTGTCCAGTGGTGGAGGGGGGCTCGAAGCTGCACCGCCAGGCATCCGATGTAGGCCGTGCCCATGACTGCAGCATGGCCAACAAAGAGAACGAGCTGACGTGCTCCGATGACACGCGCAGGAACTGCGGTCTGCCCGTGAACCCTGGAGACGCCCCCAAGAT] consensusID : consensus_1392#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence [GGGCGGCGCCATCACACCCCGGGACCCTCCAGACCGGCGTCGGGCTTTCTTCGCCAAATCAATCCCACAATCCCTCACACGCCGGCGGTGTATTCATTTGAACAAGAAAGTTGTGCGTCGTTACTGAGCCTCGGTGGAGATCTGCTCTTTGCCATTTCCCGTTTTGGAACTATACATCGGGGAAGATCTCACGACATCCCGCAAAATGGGTTGTGTTTCCTGTAACATCATCACAGCGGTGTGAGCCGCTCAGCATGTCCGGCATCGGGAGCTGTTTACCCAGA] [+] EMBL FR0060902 [GGGCGGCGCCATCACACCCCGGGACCCTCCAGACCGGCGTCGGGCTTTCTTCGCCAAATCAATCCCACAATCCCTCACACGCCGGCGGTGTATTCATTTGAACAAGAAAGTTGTGCGTCGTTACTGAGCCTCGGTGGAGATCTGCTCTTTGCCATTTCCCGTTTTGGAACTATACATCGGGGAAGATCTCACGACATCCCGCAAAATGGGTTGTGTTTCCTGTAACATCATCACAGCGGTGTGAGCCGCTCAGCATGTCCGGCATCGGGAGCTGTTTACCCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1392#0 TGCTCTTTGCCATTTCCCGTTTTGGAACTATACATCGGTGAAGATCCCACGACATCCCGC 60 consensus_1392#1 --------------------------------------GGGCGGCGCCATCACACCCCG- 21 * * *** *** **** consensus_1392#0 AAAATGGTTTGGTCGGTATCTTTACTGTTCACATGCTCAACAAAGTCTTTTAACAGTGTT 120 consensus_1392#1 GGACCCTCCAGACCGGCGTCGGGCTTTCT-------TCGCCAAATCAATCCCACAATCCC 74 * * *** ** * * ** **** * *** * consensus_1392#0 TCCTGTAACATCATCACAGCGGTGTGAGCCGCTCAGCATGTCCGTCATCGGGAGCTGTTT 180 consensus_1392#1 TCA--------CACGCCGGCGGTGTATTCATTTGAACAAGAAAGTTGTGCGTCGTTACTG 126 ** ** * ******* * * * ** * ** * * * * * consensus_1392#0 ACCCAGAAACAACCCAATGGCTTTCTTCCTTTTTTCCTGTGTCTTTCTGCATGAAACATG 240 consensus_1392#1 AGCC---------TCGGTGGAGATCTGCTCTTTGCCATTTCCCGTTTTG---GAACTATA 174 * ** * *** *** * *** * * * * ** ** *** ** consensus_1392#0 AAGCAGGTG-GATATTATAA-ATAAGGAAGAATTAGAAAAAGAAAGGTTTCAAGACCATT 298 consensus_1392#1 CATCGGGGAAGATCTCACGACATCCCGCAAAAT--GGGTTGTGTTTCCTGTAACATCATC 232 * * ** *** * * * ** * * *** * * ** * *** consensus_1392#0 ACAGAGTCCCCAGCCCAGCCAAA-GCCAAGAAGCGAGTGTCATCGGTCAAGAGGAAGGGT 357 consensus_1392#1 ACAGCGGTGTGAGCCGCTCAGCATGTCCGGCATCGGGAGCTGTTTACCCAGA-------- 284 **** * **** * * * * * * ** * * * * *** consensus_1392#0 TGTCCAGTGGTGGAGGGGGGCTCGAAGCTGCACCGCCAGGCATCCGATGTAGGCCGTGCC 417 consensus_1392#1 ------------------------------------------------------------ consensus_1392#0 CATGACTGCAGCATGGCCAACAAAGAGAACGAGCTGACGTGCTCCGATGACACGCGCAGG 477 consensus_1392#1 ------------------------------------------------------------ consensus_1392#0 AACTGCGGTCTGCCCGTGAACCCTGGAGACGCCCCCAAGAT 518 consensus_1392#1 ----------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |