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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1398#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[ACTACTTCTGACTACTGTGCTTTGGGATTATCTGCCCAGGCACATGATCCCAAAGCACTGCTCTGTAATTTCAGTTGGTATAGAAATGTATTTATTGTGACTTGTGCTTCTGTTACAAAGCCAAAGAACCTTATTTCATCTAAATATACAGCTGATCTTTAATTAAGCAACTAAGTACATAAATACACACTGCGAGAGGTCTTCCAGTTCAATATTTAATGTTTTGTGTCTAATAAGGAAATGACTGATGCAGAAAGGTCACTGATTCAAGATCTTGGCAAGTGTGACTTTGGAGAGATTCACGCCATGCACAAAGCGGAAGTGGAGGCCAGGAAAAACATGACCAAGGAGGAGAAACAGGCTTTGAAAGAGGCCAACCAGAAAATAGTGGACGAGTTTGGGTACTGTCTGCTCGACCACCACAGAGAGCGCATTGGCAACTTCAAGATCGAGCCGCCAGGCCTGTTTCGGGGTAGAGGCGAGCATCCTAAACAGGGCATGCTGAAGAAAAGGATTCAACCAGAGGACATCATTATAAACTGCAGCAAAGAGGCTTGTATTCCGGTGCCTCCTGCTGGTCACCGTTGGAAGGAGGTTCGACACGACAACACTGTAACATGG]
[+] EMBL BU807761 [ACTACTTCTGACTACTGTGCTTTGGGATTATCTGCCCAGGCACATGATCCCAAAGCACTGCTCTGTAATTTCAGTTGGTATAGAAATGTATTTATTGTGACTTGTGCTTCTGTTACAAAGCCAAAGAACCTTATTTCATCTAAATATACAGCTGATCTTTAATTAAGCAACTAAGTACATAAATACACACTGCGAGAGGTCTTCCAGTTCAATATTTAATGTTTTGTGTCTAATAAGGAAATGACTGATGCAGAAAGGTCACTGATTCAAGATCTTGGCAAGTGTGACTTTGGAGAGATTCACGCCATGCACAAAGCGGAAGTGGAGGCCAGGAAAAACATGACCAAGGAGGAGAAACAGGCTTTGAAAGAGGCCAACCAGAAAATAGTGGACGAGTTTGGGTACTGTCTGCTCGACCACCACAGAGAGCGCATTGGCAACTTCAAGATCGAGCCGCCAGGCCTGTTTCGGGGTAGAGGCGAGCATCCTAAACAGGGCATGCTGAAGAAAAGGATTCAACCAGAGGACATCATTATAAACTGCAGCAAAGAGGCTTGTATTCCGGTGCCTCCTGCTGGTCACCGTTGGAAGGAGGTTCGACACGACAACACTGTAACATGG]
consensusID : consensus_1398#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[AGGAGGAGCAAAGTCGTTGGAGATGGTTTGGAAACGCCATTCCTTTCATCTTCCATTGACCCAACACATCCCTACTGCATCCATCATCAGACAAGAAACCAGTGAAAAATATCAGTGTCTCTAAGTATGTCTTCACCCTTTCATTGGCTTCCTTTTCATTAGGTGGGAAGAAGAGAAATATGAAGATGGAGTGAAATGGAGGTTCCTGGAACACAGTGGACCCTACTTCCCTCCTGAGTACCAGCCTCTGCCTGACAACGTCCACTTCTACTATGATGGGAAGAAAGTGAAGTTAAGCCTCGCAGCTGAAGAGGTGGCGCTGTTTTTTGCCCAAATGTTGGACCATGAGTACACCACAAAGAAGGTGTTCCGAGAGAACTTCTTTAAAGACTGGAGAAAGGAAATGACTGATGCAGAAAGGTCACTGATTCAAGATCTTGGCAAGTGTGACTTTGGAGAGATTCACACCATGCACAAAGCGAAAGTGGAGGCCAGGAAAAACATGACCAAGGAGGAGAAACAGGCTTTGAAAGAGGCCAACCAGAAAATAGTGGACGAGTTTGGGTACTGTCTGCTCGACCACCACAGAGAGCGCATTGGCAACTTCAAGA]
[+] EMBL CA590387 [AGGAGGAGCAAAGTCGTTGGAGATGGTTTGGAAACGCCATTCCTTTCATCTTCCATTGACCCAACACATCCCTACTGCATCCATCATCAGACAAGAAACCAGTGAAAAATATCAGTGTCTCTAAGTATGTCTTCACCCTTTCATTGGCTTCCTTTTCATTAGGTGGGAAGAAGAGAAATATGAAGATGGAGTGAAATGGAGGTTCCTGGAACACAGTGGACCCTACTTCCCTCCTGAGTACCAGCCTCTGCCTGACAACGTCCACTTCTACTATGATGGGAAGAAAGTGAAGTTAAGCCTCGCAGCTGAAGAGGTGGCGCTGTTTTTTGCCCAAATGTTGGACCATGAGTACACCACAAAGAAGGTGTTCCGAGAGAACTTCTTTAAAGACTGGAGAAAGGAAATGACTGATGCAGAAAGGTCACTGATTCAAGATCTTGGCAAGTGTGACTTTGGAGAGATTCACACCATGCACAAAGCGAAAGTGGAGGCCAGGAAAAACATGACCAAGGAGGAGAAACAGGCTTTGAAAGAGGCCAACCAGAAAATAGTGGACGAGTTTGGGTACTGTCTGCTCGACCACCACAGAGAGCGCATTGGCAACTTCAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1398#0 ------------------------------------------------------------
consensus_1398#1 AGGAGGAGCAAAGTCGTTGGAGATGGTTTGGAAACGCCATTCCTTTCATCTTCCATTGAC 60
consensus_1398#0 ------------------------------------------------------------
consensus_1398#1 CCAACACATCCCTACTGCATCCATCATCAGACAAGAAACCAGTGAAAAATATCAGTGTCT 120
consensus_1398#0 -------------------------------------ACTACTTCTGACTACTGTGCTTT 23
consensus_1398#1 CTAAGTATGTCTTCACCCTTTCATTGGCTTCCTTTTCATTAGGTGGGAAGAA-GAGAAAT 179
* ** * ** * * * *
consensus_1398#0 GGGATTATCTGCCCAGGCACATGATCCCAAAGCAC--TGCTCTGTAATTTCAGTTGGTAT 81
consensus_1398#1 ATGAAGATGGAGTGAAATGGAGGTTCCTGGAACACAGTGGACCCTACTTCCCTCCTGAGT 239
** ** * * * *** * *** ** * ** ** * * *
consensus_1398#0 AGAAATGTATTTATTGTGACTTGTGCTTCTGTTACAAAGCCAAAGAACCTTATTT----- 136
consensus_1398#1 ACCAGCCTCTGCCTGACAACGTCCACTTCTACTATGATGGGAAGAAAGTGAAGTTAAGCC 299
* * * * * ** * ***** ** * * ** ** * **
consensus_1398#0 ---CATCTAAATATACAGC--TGATCTTTAATTAAGCAACTAAGTACATAAATACACACT 191
consensus_1398#1 TCGCAGCTGAAGAGGTGGCGCTGTTTTTTGCCCAAATG--TTGGACCATGAGTACACCAC 357
** ** ** * ** ** * *** ** * * *** * *****
consensus_1398#0 GCGAGAGGTCTTCCAGTTCAA--TATTTAATGTTTTGTGTCTAATAAGGAAATGACTGAT 249
consensus_1398#1 AAAGAAGGTGTTCCGAGAGAACTTCTTTAAAGACTGG-----AGAAAGGAAATGACTGAT 412
**** **** ** * ***** * * * * ***************
consensus_1398#0 GCAGAAAGGTCACTGATTCAAGATCTTGGCAAGTGTGACTTTGGAGAGATTCACGCCATG 309
consensus_1398#1 GCAGAAAGGTCACTGATTCAAGATCTTGGCAAGTGTGACTTTGGAGAGATTCACACCATG 472
****************************************************** *****
consensus_1398#0 CACAAAGCGGAAGTGGAGGCCAGGAAAAACATGACCAAGGAGGAGAAACAGGCTTTGAAA 369
consensus_1398#1 CACAAAGCGAAAGTGGAGGCCAGGAAAAACATGACCAAGGAGGAGAAACAGGCTTTGAAA 532
********* **************************************************
consensus_1398#0 GAGGCCAACCAGAAAATAGTGGACGAGTTTGGGTACTGTCTGCTCGACCACCACAGAGAG 429
consensus_1398#1 GAGGCCAACCAGAAAATAGTGGACGAGTTTGGGTACTGTCTGCTCGACCACCACAGAGAG 592
************************************************************
consensus_1398#0 CGCATTGGCAACTTCAAGATCGAGCCGCCAGGCCTGTTTCGGGGTAGAGGCGAGCATCCT 489
consensus_1398#1 CGCATTGGCAACTTCAAGA----------------------------------------- 611
*******************
consensus_1398#0 AAACAGGGCATGCTGAAGAAAAGGATTCAACCAGAGGACATCATTATAAACTGCAGCAAA 549
consensus_1398#1 ------------------------------------------------------------
consensus_1398#0 GAGGCTTGTATTCCGGTGCCTCCTGCTGGTCACCGTTGGAAGGAGGTTCGACACGACAAC 609
consensus_1398#1 ------------------------------------------------------------
consensus_1398#0 ACTGTAACATGG 621
consensus_1398#1 ------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |