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Takifugu rubripes
cluster # 1410 cluster # 1410       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1410#0 length = 677 sequences # 2  
consensus_1410#1 length = 599 sequences # 1  

consensusID : consensus_1410#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 677
fasta sequence
                              [ATAATGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATAAAATGTGAAAAATACACAAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGTTCGATAACATTTCATCCTGACACAATAAAATCGTGTGTTTTGGGTAAAGTAGCATTTAAAAAGAAAATACGGAGGGAATCACTAGCTAACGCTGCCGGCTCGGGACAGCTACAATCTACTAGCCAGCCATCATTGGCAAAAGGAGGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGAAACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCTGTAAAAGGGGAACTTGCAGGTGGAGTATTAACATTTCTTCATCTCAGTCGGCGTCATTTGATCAGTAGATGGGAAGAGCTACCGGTGCAGTGAGGCTAATGTGCATCTTTTCAGCATGCCGATGGAGAAAGGTTGAGAGAGACCGAGTAAAATGCCTAGAAGGTCACGTTCGGTCACTTTTAAAAAATAACACACTTTATAAAGTATAAATGGGGTGTGAGTATAAGACAACACACTTAGCCCAAGTTTTAAAACCTTTATTTGAGACAATGTCTCACCGCCAAGGGTTTAACTTTAGTTATTCACGGAATCAATAA]

[+] EMBL CA588179             [ATACTGTTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATAAAATGTGAAAAATACACAAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGTTCGATAACATTTCATCCTGACACAATAAAATCGTGTGTTTTGGGTAAAGTAGCATTTAAAAAGAAAATACGGAGGGAATCACTAGCTAACGCTGCCGGCTCGGGACAGCTACAATCTACTAGCCAGCCATCATTGGCAAAAGGAGGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGAAACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCTGTAAAAGGGGAACTTGCAGGTGGAGTATTAACATTTCTTCATCTCAGTCGGCGTCATTTGATCAGTAGATGGGAAGAGCTACCGGTGCAGTGAGGCTAATGTGCATCTTTTCAGCATGCCGATGGAGAAAGGTTGAGAGAGACCGAGTAAAATGCCTAGAAGGTCACGTTCGGTCACTTTTAAAAAATAACACACTTTATAAAGTATAAATGGGGTGTGAGTATAAGACAACACACTTAGCCCAAGTTTTAAAACCTTTATTTGAGACAATGTCTCACCGCCAAGGGTTTAACTTTAGTTATTCACGGAATCAATAA]
[+] EMBL CA591487             [ TTATGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATATAATGTGAAAAATACACAAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGTTCGATAACATTTCATCCTGACACAATAAAATCGTGTGTTTTGGGTAAAGTAGCATTTAAAAAGAAAATACGGAGGGAATCACTAGCTAACGCTGCCGGCTCGGGACAGCTACAATCTACTAGCCAGCCATCATTGGCAAAAGGAGGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGAAACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCTGTAAAAGGGGAACTTGCAGGTGGAGTATTAACATTTCTTCATCTCAGTCGGCGTCATTTGATCAGTAGATGGGAAGAGCTACCGGTGCAGTGAGGCTAATGTGCATCTTTTCAGCATGCCGATGGAGAAAGGTT                                                                                                                                                                                       ]


>consensus_1410#0 ATAATGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATAAAATGTGAAAAATACAC AAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGTTCGATAACATTTCATCCTGACACA ATAAAATCGTGTGTTTTGGGTAAAGTAGCATTTAAAAAGAAAATACGGAGGGAATCACTA GCTAACGCTGCCGGCTCGGGACAGCTACAATCTACTAGCCAGCCATCATTGGCAAAAGGA GGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGA AACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCT GTAAAAGGGGAACTTGCAGGTGGAGTATTAACATTTCTTCATCTCAGTCGGCGTCATTTG ATCAGTAGATGGGAAGAGCTACCGGTGCAGTGAGGCTAATGTGCATCTTTTCAGCATGCC GATGGAGAAAGGTTGAGAGAGACCGAGTAAAATGCCTAGAAGGTCACGTTCGGTCACTTT TAAAAAATAACACACTTTATAAAGTATAAATGGGGTGTGAGTATAAGACAACACACTTAG CCCAAGTTTTAAAACCTTTATTTGAGACAATGTCTCACCGCCAAGGGTTTAACTTTAGTT ATTCACGGAATCAATAA



consensusID : consensus_1410#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence
                              [AAAGGTTTTCCTGATAAATGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATAAAATGTGAAAAATACACAAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGAGGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGAAACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCTGTAAAAGGGGAACTTGCAGGAGGAACTGCAGAGGGAATCCAAACTGCCTGGTTGCTATTGGTGAGCAGGCATGGCTTGGAGAGATAGATGAAAACACCTTCCACAATATTGACGATCCAAATTCAGAGCGTCGAGACAAGAACACCTTCGTGGGCCTGACCAATCTAGGTGCAACATGTTACGTCAACACATTTCTGCAGGTGTGGTTCCACAACCTGGAGCTGCGCCGCAGCCTTTATGGGTGCAACAGCTCCAGAGCGCAGGAACACAACACCGGTTCTGATTATGAGCCCCAGTCCATCTGTGAGCATCTGCAGTATCTGTTTGCGCTCTTGCAGAACAGCAACAGGAAGTACATTGACCCCTCGG]

[+] EMBL BU807684             [AAAGGTTTTCCTGATAAATGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATAAAATGTGAAAAATACACAAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGAGGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGAAACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCTGTAAAAGGGGAACTTGCAGGAGGAACTGCAGAGGGAATCCAAACTGCCTGGTTGCTATTGGTGAGCAGGCATGGCTTGGAGAGATAGATGAAAACACCTTCCACAATATTGACGATCCAAATTCAGAGCGTCGAGACAAGAACACCTTCGTGGGCCTGACCAATCTAGGTGCAACATGTTACGTCAACACATTTCTGCAGGTGTGGTTCCACAACCTGGAGCTGCGCCGCAGCCTTTATGGGTGCAACAGCTCCAGAGCGCAGGAACACAACACCGGTTCTGATTATGAGCCCCAGTCCATCTGTGAGCATCTGCAGTATCTGTTTGCGCTCTTGCAGAACAGCAACAGGAAGTACATTGACCCCTCGG]


>consensus_1410#1 AAAGGTTTTCCTGATAAATGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATAAAA TGTGAAAAATACACAAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGAGGATCATGGC GCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGAAACCAGAAGA CATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCTGTAAAAGGGG AACTTGCAGGAGGAACTGCAGAGGGAATCCAAACTGCCTGGTTGCTATTGGTGAGCAGGC ATGGCTTGGAGAGATAGATGAAAACACCTTCCACAATATTGACGATCCAAATTCAGAGCG TCGAGACAAGAACACCTTCGTGGGCCTGACCAATCTAGGTGCAACATGTTACGTCAACAC ATTTCTGCAGGTGTGGTTCCACAACCTGGAGCTGCGCCGCAGCCTTTATGGGTGCAACAG CTCCAGAGCGCAGGAACACAACACCGGTTCTGATTATGAGCCCCAGTCCATCTGTGAGCA TCTGCAGTATCTGTTTGCGCTCTTGCAGAACAGCAACAGGAAGTACATTGACCCCTCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1410#0      ATAATGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATAAAATGTGAAAAATACAC 60
consensus_1410#1      ------------------------------------------------------------
                                                                                  

consensus_1410#0      AAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGTTCGATAACATTTCATCCTGACACA 120
consensus_1410#1      ------------------------------------------------------------
                                                                                  

consensus_1410#0      ATAAAATCGTGTGTTTTGGGTAAAGTAGCATTTAAAAAGAAAATACGGAGGGAATCACTA 180
consensus_1410#1      --AAAG----GTTTTCCTGATAAA-TGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTG 53
                        ***     ** **   * **** *    ** *    *  **  *  *   ** *  * 

consensus_1410#0      GCTAACGCTGCCGGCTCGGGACAGCTACAATCTACTAGCCAGCCATCATTGGCAAAAGGA 240
consensus_1410#1      AATAAAA-TGTGAAAAATACACAAGTGTT-TTTGTAAAATAGCTG-CACGCATGAAAGGA 110
                        ***   **          ***  *    * *   *   ***   **      ******

consensus_1410#0      GGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGA 300
consensus_1410#1      GGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGA 170
                      ************************************************************

consensus_1410#0      AACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCT 360
consensus_1410#1      AACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCT 230
                      ************************************************************

consensus_1410#0      GTAAAAGGGGAACTTGCAGGTGGAGTATTAACATTTCTTCATCTCAGTCGGCGTCATTTG 420
consensus_1410#1      GTAAAAGGGGAACTTGCAGGAGGAACTGCAGAGGGAATCCAAACTGCCTGGTTGCTATTG 290
                      ******************** ***     *       * **        **   *  ***

consensus_1410#0      ATCAGTAGATGGGA---AGAGCTACCGGTGCAGTGAGGCT----AATGTGCATCTT---- 469
consensus_1410#1      GTGAGCAGGCATGGCTTGGAGAGATAGATGAAAACACCTTCCACAATATTGACGATCCAA 350
                       * ** **    *     ***  *  * ** *   *   *    *** *  *   *    

consensus_1410#0      -TTCAGCATGCCGATG-GAGAAAGGTTGAGAGAGACCGAGTAAAAT--GCCTAGAAGGTC 525
consensus_1410#1      ATTCAGAGCGTCGAGACAAGAACACCTTCGTGGGCCTGACCAATCTAGGTGCAACATGTT 410
                       *****   * ***    ****    *  * * * * **  **  *  *   *  * ** 

consensus_1410#0      ACGTTCGGTCACTTTTAAAAA----ATAACACACTTTATAA---------AGTATAAATG 572
consensus_1410#1      ACGTCAACACATTTCTGCAGGTGTGGTTCCACAACCTGGAGCTGCGCCGCAGCCTTTATG 470
                      ****     ** ** *  *       *  ****   *  *          **  *  ***

consensus_1410#0      GG-GTGTGAGTATAAGACAACAC--ACTTAGCCCAAGTTTTAAAACCTTTATTTGAGACA 629
consensus_1410#1      GGTGCAACAGCTCCAGAGCGCAGGAACACAACACCGGTTCTGAT-TATGAGCCCCAGTCC 529
                      ** *    **    ***   **   **  * * *  *** * *    *       ** * 

consensus_1410#0      ATGTCTCACCGCCAAGGGTTTAACTTTAGTTATTCACGGAAT--CAATAA---------- 677
consensus_1410#1      ATCTGTGAGCATCTGCAGTATCTGTTTGCGCTCTTGCAGAACAGCAACAGGAAGTACATT 589
                      ** * * * *  *    ** *   ***      *  * ***   *** *           

consensus_1410#0      ----------
consensus_1410#1      GACCCCTCGG 599
                                




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)