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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1410#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 677 fasta sequence
[ATAATGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATAAAATGTGAAAAATACACAAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGTTCGATAACATTTCATCCTGACACAATAAAATCGTGTGTTTTGGGTAAAGTAGCATTTAAAAAGAAAATACGGAGGGAATCACTAGCTAACGCTGCCGGCTCGGGACAGCTACAATCTACTAGCCAGCCATCATTGGCAAAAGGAGGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGAAACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCTGTAAAAGGGGAACTTGCAGGTGGAGTATTAACATTTCTTCATCTCAGTCGGCGTCATTTGATCAGTAGATGGGAAGAGCTACCGGTGCAGTGAGGCTAATGTGCATCTTTTCAGCATGCCGATGGAGAAAGGTTGAGAGAGACCGAGTAAAATGCCTAGAAGGTCACGTTCGGTCACTTTTAAAAAATAACACACTTTATAAAGTATAAATGGGGTGTGAGTATAAGACAACACACTTAGCCCAAGTTTTAAAACCTTTATTTGAGACAATGTCTCACCGCCAAGGGTTTAACTTTAGTTATTCACGGAATCAATAA]
[+] EMBL CA588179 [ATACTGTTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATAAAATGTGAAAAATACACAAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGTTCGATAACATTTCATCCTGACACAATAAAATCGTGTGTTTTGGGTAAAGTAGCATTTAAAAAGAAAATACGGAGGGAATCACTAGCTAACGCTGCCGGCTCGGGACAGCTACAATCTACTAGCCAGCCATCATTGGCAAAAGGAGGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGAAACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCTGTAAAAGGGGAACTTGCAGGTGGAGTATTAACATTTCTTCATCTCAGTCGGCGTCATTTGATCAGTAGATGGGAAGAGCTACCGGTGCAGTGAGGCTAATGTGCATCTTTTCAGCATGCCGATGGAGAAAGGTTGAGAGAGACCGAGTAAAATGCCTAGAAGGTCACGTTCGGTCACTTTTAAAAAATAACACACTTTATAAAGTATAAATGGGGTGTGAGTATAAGACAACACACTTAGCCCAAGTTTTAAAACCTTTATTTGAGACAATGTCTCACCGCCAAGGGTTTAACTTTAGTTATTCACGGAATCAATAA]
[+] EMBL CA591487 [ TTATGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATATAATGTGAAAAATACACAAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGTTCGATAACATTTCATCCTGACACAATAAAATCGTGTGTTTTGGGTAAAGTAGCATTTAAAAAGAAAATACGGAGGGAATCACTAGCTAACGCTGCCGGCTCGGGACAGCTACAATCTACTAGCCAGCCATCATTGGCAAAAGGAGGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGAAACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCTGTAAAAGGGGAACTTGCAGGTGGAGTATTAACATTTCTTCATCTCAGTCGGCGTCATTTGATCAGTAGATGGGAAGAGCTACCGGTGCAGTGAGGCTAATGTGCATCTTTTCAGCATGCCGATGGAGAAAGGTT ]
consensusID : consensus_1410#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence
[AAAGGTTTTCCTGATAAATGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATAAAATGTGAAAAATACACAAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGAGGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGAAACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCTGTAAAAGGGGAACTTGCAGGAGGAACTGCAGAGGGAATCCAAACTGCCTGGTTGCTATTGGTGAGCAGGCATGGCTTGGAGAGATAGATGAAAACACCTTCCACAATATTGACGATCCAAATTCAGAGCGTCGAGACAAGAACACCTTCGTGGGCCTGACCAATCTAGGTGCAACATGTTACGTCAACACATTTCTGCAGGTGTGGTTCCACAACCTGGAGCTGCGCCGCAGCCTTTATGGGTGCAACAGCTCCAGAGCGCAGGAACACAACACCGGTTCTGATTATGAGCCCCAGTCCATCTGTGAGCATCTGCAGTATCTGTTTGCGCTCTTGCAGAACAGCAACAGGAAGTACATTGACCCCTCGG]
[+] EMBL BU807684 [AAAGGTTTTCCTGATAAATGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATAAAATGTGAAAAATACACAAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGAGGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGAAACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCTGTAAAAGGGGAACTTGCAGGAGGAACTGCAGAGGGAATCCAAACTGCCTGGTTGCTATTGGTGAGCAGGCATGGCTTGGAGAGATAGATGAAAACACCTTCCACAATATTGACGATCCAAATTCAGAGCGTCGAGACAAGAACACCTTCGTGGGCCTGACCAATCTAGGTGCAACATGTTACGTCAACACATTTCTGCAGGTGTGGTTCCACAACCTGGAGCTGCGCCGCAGCCTTTATGGGTGCAACAGCTCCAGAGCGCAGGAACACAACACCGGTTCTGATTATGAGCCCCAGTCCATCTGTGAGCATCTGCAGTATCTGTTTGCGCTCTTGCAGAACAGCAACAGGAAGTACATTGACCCCTCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1410#0 ATAATGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATAAAATGTGAAAAATACAC 60
consensus_1410#1 ------------------------------------------------------------
consensus_1410#0 AAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGTTCGATAACATTTCATCCTGACACA 120
consensus_1410#1 ------------------------------------------------------------
consensus_1410#0 ATAAAATCGTGTGTTTTGGGTAAAGTAGCATTTAAAAAGAAAATACGGAGGGAATCACTA 180
consensus_1410#1 --AAAG----GTTTTCCTGATAAA-TGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTG 53
*** ** ** * **** * ** * * ** * * ** * *
consensus_1410#0 GCTAACGCTGCCGGCTCGGGACAGCTACAATCTACTAGCCAGCCATCATTGGCAAAAGGA 240
consensus_1410#1 AATAAAA-TGTGAAAAATACACAAGTGTT-TTTGTAAAATAGCTG-CACGCATGAAAGGA 110
*** ** *** * * * * *** ** ******
consensus_1410#0 GGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGA 300
consensus_1410#1 GGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGA 170
************************************************************
consensus_1410#0 AACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCT 360
consensus_1410#1 AACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCT 230
************************************************************
consensus_1410#0 GTAAAAGGGGAACTTGCAGGTGGAGTATTAACATTTCTTCATCTCAGTCGGCGTCATTTG 420
consensus_1410#1 GTAAAAGGGGAACTTGCAGGAGGAACTGCAGAGGGAATCCAAACTGCCTGGTTGCTATTG 290
******************** *** * * ** ** * ***
consensus_1410#0 ATCAGTAGATGGGA---AGAGCTACCGGTGCAGTGAGGCT----AATGTGCATCTT---- 469
consensus_1410#1 GTGAGCAGGCATGGCTTGGAGAGATAGATGAAAACACCTTCCACAATATTGACGATCCAA 350
* ** ** * *** * * ** * * * *** * * *
consensus_1410#0 -TTCAGCATGCCGATG-GAGAAAGGTTGAGAGAGACCGAGTAAAAT--GCCTAGAAGGTC 525
consensus_1410#1 ATTCAGAGCGTCGAGACAAGAACACCTTCGTGGGCCTGACCAATCTAGGTGCAACATGTT 410
***** * *** **** * * * * * ** ** * * * * **
consensus_1410#0 ACGTTCGGTCACTTTTAAAAA----ATAACACACTTTATAA---------AGTATAAATG 572
consensus_1410#1 ACGTCAACACATTTCTGCAGGTGTGGTTCCACAACCTGGAGCTGCGCCGCAGCCTTTATG 470
**** ** ** * * * **** * * ** * ***
consensus_1410#0 GG-GTGTGAGTATAAGACAACAC--ACTTAGCCCAAGTTTTAAAACCTTTATTTGAGACA 629
consensus_1410#1 GGTGCAACAGCTCCAGAGCGCAGGAACACAACACCGGTTCTGAT-TATGAGCCCCAGTCC 529
** * ** *** ** ** * * * *** * * * ** *
consensus_1410#0 ATGTCTCACCGCCAAGGGTTTAACTTTAGTTATTCACGGAAT--CAATAA---------- 677
consensus_1410#1 ATCTGTGAGCATCTGCAGTATCTGTTTGCGCTCTTGCAGAACAGCAACAGGAAGTACATT 589
** * * * * * ** * *** * * *** *** *
consensus_1410#0 ----------
consensus_1410#1 GACCCCTCGG 599
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |