These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1410#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 677 fasta sequence [ATAATGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATAAAATGTGAAAAATACACAAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGTTCGATAACATTTCATCCTGACACAATAAAATCGTGTGTTTTGGGTAAAGTAGCATTTAAAAAGAAAATACGGAGGGAATCACTAGCTAACGCTGCCGGCTCGGGACAGCTACAATCTACTAGCCAGCCATCATTGGCAAAAGGAGGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGAAACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCTGTAAAAGGGGAACTTGCAGGTGGAGTATTAACATTTCTTCATCTCAGTCGGCGTCATTTGATCAGTAGATGGGAAGAGCTACCGGTGCAGTGAGGCTAATGTGCATCTTTTCAGCATGCCGATGGAGAAAGGTTGAGAGAGACCGAGTAAAATGCCTAGAAGGTCACGTTCGGTCACTTTTAAAAAATAACACACTTTATAAAGTATAAATGGGGTGTGAGTATAAGACAACACACTTAGCCCAAGTTTTAAAACCTTTATTTGAGACAATGTCTCACCGCCAAGGGTTTAACTTTAGTTATTCACGGAATCAATAA] [+] EMBL CA588179 [ATACTGTTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATAAAATGTGAAAAATACACAAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGTTCGATAACATTTCATCCTGACACAATAAAATCGTGTGTTTTGGGTAAAGTAGCATTTAAAAAGAAAATACGGAGGGAATCACTAGCTAACGCTGCCGGCTCGGGACAGCTACAATCTACTAGCCAGCCATCATTGGCAAAAGGAGGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGAAACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCTGTAAAAGGGGAACTTGCAGGTGGAGTATTAACATTTCTTCATCTCAGTCGGCGTCATTTGATCAGTAGATGGGAAGAGCTACCGGTGCAGTGAGGCTAATGTGCATCTTTTCAGCATGCCGATGGAGAAAGGTTGAGAGAGACCGAGTAAAATGCCTAGAAGGTCACGTTCGGTCACTTTTAAAAAATAACACACTTTATAAAGTATAAATGGGGTGTGAGTATAAGACAACACACTTAGCCCAAGTTTTAAAACCTTTATTTGAGACAATGTCTCACCGCCAAGGGTTTAACTTTAGTTATTCACGGAATCAATAA] [+] EMBL CA591487 [ TTATGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATATAATGTGAAAAATACACAAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGTTCGATAACATTTCATCCTGACACAATAAAATCGTGTGTTTTGGGTAAAGTAGCATTTAAAAAGAAAATACGGAGGGAATCACTAGCTAACGCTGCCGGCTCGGGACAGCTACAATCTACTAGCCAGCCATCATTGGCAAAAGGAGGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGAAACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCTGTAAAAGGGGAACTTGCAGGTGGAGTATTAACATTTCTTCATCTCAGTCGGCGTCATTTGATCAGTAGATGGGAAGAGCTACCGGTGCAGTGAGGCTAATGTGCATCTTTTCAGCATGCCGATGGAGAAAGGTT ] consensusID : consensus_1410#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [AAAGGTTTTCCTGATAAATGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATAAAATGTGAAAAATACACAAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGAGGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGAAACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCTGTAAAAGGGGAACTTGCAGGAGGAACTGCAGAGGGAATCCAAACTGCCTGGTTGCTATTGGTGAGCAGGCATGGCTTGGAGAGATAGATGAAAACACCTTCCACAATATTGACGATCCAAATTCAGAGCGTCGAGACAAGAACACCTTCGTGGGCCTGACCAATCTAGGTGCAACATGTTACGTCAACACATTTCTGCAGGTGTGGTTCCACAACCTGGAGCTGCGCCGCAGCCTTTATGGGTGCAACAGCTCCAGAGCGCAGGAACACAACACCGGTTCTGATTATGAGCCCCAGTCCATCTGTGAGCATCTGCAGTATCTGTTTGCGCTCTTGCAGAACAGCAACAGGAAGTACATTGACCCCTCGG] [+] EMBL BU807684 [AAAGGTTTTCCTGATAAATGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATAAAATGTGAAAAATACACAAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGAGGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGAAACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCTGTAAAAGGGGAACTTGCAGGAGGAACTGCAGAGGGAATCCAAACTGCCTGGTTGCTATTGGTGAGCAGGCATGGCTTGGAGAGATAGATGAAAACACCTTCCACAATATTGACGATCCAAATTCAGAGCGTCGAGACAAGAACACCTTCGTGGGCCTGACCAATCTAGGTGCAACATGTTACGTCAACACATTTCTGCAGGTGTGGTTCCACAACCTGGAGCTGCGCCGCAGCCTTTATGGGTGCAACAGCTCCAGAGCGCAGGAACACAACACCGGTTCTGATTATGAGCCCCAGTCCATCTGTGAGCATCTGCAGTATCTGTTTGCGCTCTTGCAGAACAGCAACAGGAAGTACATTGACCCCTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1410#0 ATAATGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTGAATAAAATGTGAAAAATACAC 60 consensus_1410#1 ------------------------------------------------------------ consensus_1410#0 AAGTGTTTTTGTAAAATAGCTGCACGCATGAAAGGTTCGATAACATTTCATCCTGACACA 120 consensus_1410#1 ------------------------------------------------------------ consensus_1410#0 ATAAAATCGTGTGTTTTGGGTAAAGTAGCATTTAAAAAGAAAATACGGAGGGAATCACTA 180 consensus_1410#1 --AAAG----GTTTTCCTGATAAA-TGCTGTTAAGGGCGCTAAATCTAAAACAACCCGTG 53 *** ** ** * **** * ** * * ** * * ** * * consensus_1410#0 GCTAACGCTGCCGGCTCGGGACAGCTACAATCTACTAGCCAGCCATCATTGGCAAAAGGA 240 consensus_1410#1 AATAAAA-TGTGAAAAATACACAAGTGTT-TTTGTAAAATAGCTG-CACGCATGAAAGGA 110 *** ** *** * * * * *** ** ****** consensus_1410#0 GGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGA 300 consensus_1410#1 GGATCATGGCGCCCCGCTTACAGCTGGAGAAAGCGGCTTGGCGCTGGGTGGAAACGGTGA 170 ************************************************************ consensus_1410#0 AACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCT 360 consensus_1410#1 AACCAGAAGACATCACGCAAGAGCACATTAACCTAGCATATCGTATCAATCTCACGGCCT 230 ************************************************************ consensus_1410#0 GTAAAAGGGGAACTTGCAGGTGGAGTATTAACATTTCTTCATCTCAGTCGGCGTCATTTG 420 consensus_1410#1 GTAAAAGGGGAACTTGCAGGAGGAACTGCAGAGGGAATCCAAACTGCCTGGTTGCTATTG 290 ******************** *** * * ** ** * *** consensus_1410#0 ATCAGTAGATGGGA---AGAGCTACCGGTGCAGTGAGGCT----AATGTGCATCTT---- 469 consensus_1410#1 GTGAGCAGGCATGGCTTGGAGAGATAGATGAAAACACCTTCCACAATATTGACGATCCAA 350 * ** ** * *** * * ** * * * *** * * * consensus_1410#0 -TTCAGCATGCCGATG-GAGAAAGGTTGAGAGAGACCGAGTAAAAT--GCCTAGAAGGTC 525 consensus_1410#1 ATTCAGAGCGTCGAGACAAGAACACCTTCGTGGGCCTGACCAATCTAGGTGCAACATGTT 410 ***** * *** **** * * * * * ** ** * * * * ** consensus_1410#0 ACGTTCGGTCACTTTTAAAAA----ATAACACACTTTATAA---------AGTATAAATG 572 consensus_1410#1 ACGTCAACACATTTCTGCAGGTGTGGTTCCACAACCTGGAGCTGCGCCGCAGCCTTTATG 470 **** ** ** * * * **** * * ** * *** consensus_1410#0 GG-GTGTGAGTATAAGACAACAC--ACTTAGCCCAAGTTTTAAAACCTTTATTTGAGACA 629 consensus_1410#1 GGTGCAACAGCTCCAGAGCGCAGGAACACAACACCGGTTCTGAT-TATGAGCCCCAGTCC 529 ** * ** *** ** ** * * * *** * * * ** * consensus_1410#0 ATGTCTCACCGCCAAGGGTTTAACTTTAGTTATTCACGGAAT--CAATAA---------- 677 consensus_1410#1 ATCTGTGAGCATCTGCAGTATCTGTTTGCGCTCTTGCAGAACAGCAACAGGAAGTACATT 589 ** * * * * * ** * *** * * *** *** * consensus_1410#0 ---------- consensus_1410#1 GACCCCTCGG 599 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |