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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1411#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 638 fasta sequence
[CAGGCTGGTACAGGCATCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAGGAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCATTCTTGTGTAACAGATCGCATCAGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCATCGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTAGAGAGGCGACGTCCAATGACCCATGGGGCCCCAGCAGCTCTCTGATGTCAGAGATTGCCGACCTCACTTACAATGTTGTGGCCTTCTCAGAAATCATGAGCATGGTGTGGAAGCGCCTCAATGACCACGGCAAGAACTGGAGACACGTGTACAAGGCTATGACCCTTATGGAATACCTGATCAAGACCGGTTCAGAACGCGTTGCTCAGCAATGCCGGGAAAACATTTACGCAGTCCAGACCCTCAAGGATTTTCAGTACATAGACCGGGACGGCAAAGACCAGGGGGTGAATGTGCGAGAAAAAGCCAAACAGCTGGTTACACTTCTGAAAGATGAAGAGAGACTAAGAGAGGAGAGGATCCACGCCCTCAAAACCAAAGAGAAGATGGCACAGACC]
[+] EMBL CA590092 [CAGGCTGGTACAGGCATCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAGGAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCATTCTTGTGTAACAGATCGCATCAGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCATCGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTAGAGAGGCGACGTCCAATGACCCATGGGGCCCCAGCAGCTCTCTGATGTCAGAGATTGCCGACCTCACTTACAATGTTGTGGCCTTCTCAGAAATCATGAGCATGGTGTGGAAGCGCCTCAATGACCACGGCAAGAACTGGAGACACGTGTACAAGGCTATGACCCTTATGGAATACCTGATCAAGACCGGTTCAGAACGCGTTGCTCAGCAATGCCGGGAAAACATTTACGCAGTCCAGACCCTCAAGGATTTTCAGTACATAGACCGGGACGGCAAAGACCAGGGGGTGAATGTGCGAGAAAAAGCCAAACAGCTGGTTACACTTCTGAAAGATGAAGAGAGACTAAGAGAGGAGAGGATCCACGCCCTCAAAACCAAAGAGAAGATGGCACAGACC]
[+] EMBL FR0060311 [ GAGGCCTGACATATGCGACCCAATGTTGCCACAGGAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCATTCTTGTGTAACAGATCGCATCAGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCATCGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTAGAGAGGCGACGTCCAATGACCCATGGGGCCCCAGCAGCTCTCTGATGTCAGAGATTGCCGACCTCACTTACAATGTTGTGGCCTTCTCAGAAATCATGAGCATGGTGTGGAAGCGCCTCAATGACCACGGCAAGAACTGGAGACACGTGTACAAGGCTATGACC ]
consensusID : consensus_1411#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence
[TCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAGGAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCATTCTTGTGTAACAGATCGCATCGGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCATCGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTGTGTTTTGCTCGGCTTAATTGGATTTTCAACACCCCCGCTCTCATTTGTCTGTGATTTAAAAGCCGTCCCCGCGTCCTTCAGCATACCTGACGGCTGCTGATAACGTGATATTTATTTTCTACGGCCCCCAGCGCCCTCCCCCGTGATACAGACGGGCTGGTCTCAATGACTTTGACGTGTTAACCCGTGTCTTGGTTAACGCTGTGTGTCGATCCCAAGGTTAGAGAGGCGACGTCCAATGACCCATGGGGCCCCAGCAG]
[+] EMBL CA589548 [TCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAGGAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCATTCTTGTGTAACAGATCGCATCGGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCATCGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTGTGTTTTGCTCGGCTTAATTGGATTTTCAACACCCCCGCTCTCATTTGTCTGTGATTTAAAAGCCGTCCCCGCGTCCTTCAGCATACCTGACGGCTGCTGATAACGTGATATTTATTTTCTACGGCCCCCAGCGCCCTCCCCCGTGATACAGACGGGCTGGTCTCAATGACTTTGACGTGTTAACCCGTGTCTTGGTTAACGCTGTGTGTCGATCCCAAGGTTAGAGAGGCGACGTCCAATGACCCATGGGGCCCCAGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1411#0 CAGGCTGGTACAGGCATCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAG 60
consensus_1411#1 ----------------TCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAG 44
********************************************
consensus_1411#0 GAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCA 120
consensus_1411#1 GAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCA 104
************************************************************
consensus_1411#0 TTCTTGTGTAACAGATCGCATCAGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCAT 180
consensus_1411#1 TTCTTGTGTAACAGATCGCATCGGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCAT 164
********************** *************************************
consensus_1411#0 CGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTA 240
consensus_1411#1 CGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTG 224
***********************************************************
consensus_1411#0 -GAGAGGCGACGTCCAATGACCCATGGGGCCCCAGCAGCTCTCTGATGTCAGAGATT--- 296
consensus_1411#1 TGTTTTGCTCGGCTTAATTGGATTTTCAACACCC-CCGCTCTCATTTGTCTGTGATTTAA 283
* ** * *** * * ** * ****** **** * ****
consensus_1411#0 --GCCGACCTCACTTACAATGTTGTGGCCTTCTCAGAAATCATGAGCATGGTGTGGAAGC 354
consensus_1411#1 AAGCCGTCCCCGCGTCC--TTCAGCATACCTGACGGCTGCTGATAACGTGATATTTATTT 341
**** ** * * * * * * * * * * * * ** * * *
consensus_1411#0 GCCTCAATGACCACGGCAAGAACTGGAGACACGTGTACAA-GGCTATGACCCTTATGGAA 413
consensus_1411#1 TCTACGGCCCCCAGCGCCCTCCCCCGTGATACAGACGGGCTGGTCTCAATGACTTTGACG 401
* * *** ** * * ** ** ** * * **
consensus_1411#0 TACCTGATCAAGACCGGTTCAGAACGCGTTGCTCAGCAATGCCGGGAAAACATTTACGCA 473
consensus_1411#1 TGTTAACCCGTGTCTTGGTTA----ACGCTGTGTGTCGATCCCAAGGTTAGAGAGGCGAC 457
* * * * * * * ** ** * ** ** * * * **
consensus_1411#0 GTCCAGACCCTCAAGGATTTTCAGTACATAGACCGGGACGGCAAAGACCAGGGGGTGAAT 533
consensus_1411#1 GTCCAATGACCCATGGGGCCCCAGCAG--------------------------------- 484
***** * ** ** *** *
consensus_1411#0 GTGCGAGAAAAAGCCAAACAGCTGGTTACACTTCTGAAAGATGAAGAGAGACTAAGAGAG 593
consensus_1411#1 ------------------------------------------------------------
consensus_1411#0 GAGAGGATCCACGCCCTCAAAACCAAAGAGAAGATGGCACAGACC 638
consensus_1411#1 ---------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |