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Takifugu rubripes
cluster # 1411 cluster # 1411       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1411#0 length = 638 sequences # 2  
consensus_1411#1 length = 484 sequences # 1  

consensusID : consensus_1411#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 638
fasta sequence
                              [CAGGCTGGTACAGGCATCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAGGAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCATTCTTGTGTAACAGATCGCATCAGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCATCGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTAGAGAGGCGACGTCCAATGACCCATGGGGCCCCAGCAGCTCTCTGATGTCAGAGATTGCCGACCTCACTTACAATGTTGTGGCCTTCTCAGAAATCATGAGCATGGTGTGGAAGCGCCTCAATGACCACGGCAAGAACTGGAGACACGTGTACAAGGCTATGACCCTTATGGAATACCTGATCAAGACCGGTTCAGAACGCGTTGCTCAGCAATGCCGGGAAAACATTTACGCAGTCCAGACCCTCAAGGATTTTCAGTACATAGACCGGGACGGCAAAGACCAGGGGGTGAATGTGCGAGAAAAAGCCAAACAGCTGGTTACACTTCTGAAAGATGAAGAGAGACTAAGAGAGGAGAGGATCCACGCCCTCAAAACCAAAGAGAAGATGGCACAGACC]

[+] EMBL CA590092             [CAGGCTGGTACAGGCATCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAGGAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCATTCTTGTGTAACAGATCGCATCAGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCATCGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTAGAGAGGCGACGTCCAATGACCCATGGGGCCCCAGCAGCTCTCTGATGTCAGAGATTGCCGACCTCACTTACAATGTTGTGGCCTTCTCAGAAATCATGAGCATGGTGTGGAAGCGCCTCAATGACCACGGCAAGAACTGGAGACACGTGTACAAGGCTATGACCCTTATGGAATACCTGATCAAGACCGGTTCAGAACGCGTTGCTCAGCAATGCCGGGAAAACATTTACGCAGTCCAGACCCTCAAGGATTTTCAGTACATAGACCGGGACGGCAAAGACCAGGGGGTGAATGTGCGAGAAAAAGCCAAACAGCTGGTTACACTTCTGAAAGATGAAGAGAGACTAAGAGAGGAGAGGATCCACGCCCTCAAAACCAAAGAGAAGATGGCACAGACC]
[+] EMBL FR0060311            [                          GAGGCCTGACATATGCGACCCAATGTTGCCACAGGAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCATTCTTGTGTAACAGATCGCATCAGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCATCGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTAGAGAGGCGACGTCCAATGACCCATGGGGCCCCAGCAGCTCTCTGATGTCAGAGATTGCCGACCTCACTTACAATGTTGTGGCCTTCTCAGAAATCATGAGCATGGTGTGGAAGCGCCTCAATGACCACGGCAAGAACTGGAGACACGTGTACAAGGCTATGACC                                                                                                                                                                                                                                          ]


>consensus_1411#0 CAGGCTGGTACAGGCATCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAG GAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCA TTCTTGTGTAACAGATCGCATCAGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCAT CGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTA GAGAGGCGACGTCCAATGACCCATGGGGCCCCAGCAGCTCTCTGATGTCAGAGATTGCCG ACCTCACTTACAATGTTGTGGCCTTCTCAGAAATCATGAGCATGGTGTGGAAGCGCCTCA ATGACCACGGCAAGAACTGGAGACACGTGTACAAGGCTATGACCCTTATGGAATACCTGA TCAAGACCGGTTCAGAACGCGTTGCTCAGCAATGCCGGGAAAACATTTACGCAGTCCAGA CCCTCAAGGATTTTCAGTACATAGACCGGGACGGCAAAGACCAGGGGGTGAATGTGCGAG AAAAAGCCAAACAGCTGGTTACACTTCTGAAAGATGAAGAGAGACTAAGAGAGGAGAGGA TCCACGCCCTCAAAACCAAAGAGAAGATGGCACAGACC



consensusID : consensus_1411#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence
                              [TCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAGGAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCATTCTTGTGTAACAGATCGCATCGGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCATCGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTGTGTTTTGCTCGGCTTAATTGGATTTTCAACACCCCCGCTCTCATTTGTCTGTGATTTAAAAGCCGTCCCCGCGTCCTTCAGCATACCTGACGGCTGCTGATAACGTGATATTTATTTTCTACGGCCCCCAGCGCCCTCCCCCGTGATACAGACGGGCTGGTCTCAATGACTTTGACGTGTTAACCCGTGTCTTGGTTAACGCTGTGTGTCGATCCCAAGGTTAGAGAGGCGACGTCCAATGACCCATGGGGCCCCAGCAG]

[+] EMBL CA589548             [TCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAGGAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCATTCTTGTGTAACAGATCGCATCGGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCATCGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTGTGTTTTGCTCGGCTTAATTGGATTTTCAACACCCCCGCTCTCATTTGTCTGTGATTTAAAAGCCGTCCCCGCGTCCTTCAGCATACCTGACGGCTGCTGATAACGTGATATTTATTTTCTACGGCCCCCAGCGCCCTCCCCCGTGATACAGACGGGCTGGTCTCAATGACTTTGACGTGTTAACCCGTGTCTTGGTTAACGCTGTGTGTCGATCCCAAGGTTAGAGAGGCGACGTCCAATGACCCATGGGGCCCCAGCAG]


>consensus_1411#1 TCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAGGAAGCAACAGATGAAC AGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCATTCTTGTGTAACAGAT CGCATCGGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCATCGCTACGGCGACAAGT AAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTGTGTTTTGCTCGGCTTA ATTGGATTTTCAACACCCCCGCTCTCATTTGTCTGTGATTTAAAAGCCGTCCCCGCGTCC TTCAGCATACCTGACGGCTGCTGATAACGTGATATTTATTTTCTACGGCCCCCAGCGCCC TCCCCCGTGATACAGACGGGCTGGTCTCAATGACTTTGACGTGTTAACCCGTGTCTTGGT TAACGCTGTGTGTCGATCCCAAGGTTAGAGAGGCGACGTCCAATGACCCATGGGGCCCCA GCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1411#0      CAGGCTGGTACAGGCATCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAG 60
consensus_1411#1      ----------------TCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAG 44
                                      ********************************************

consensus_1411#0      GAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCA 120
consensus_1411#1      GAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCA 104
                      ************************************************************

consensus_1411#0      TTCTTGTGTAACAGATCGCATCAGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCAT 180
consensus_1411#1      TTCTTGTGTAACAGATCGCATCGGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCAT 164
                      ********************** *************************************

consensus_1411#0      CGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTA 240
consensus_1411#1      CGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTG 224
                      *********************************************************** 

consensus_1411#0      -GAGAGGCGACGTCCAATGACCCATGGGGCCCCAGCAGCTCTCTGATGTCAGAGATT--- 296
consensus_1411#1      TGTTTTGCTCGGCTTAATTGGATTTTCAACACCC-CCGCTCTCATTTGTCTGTGATTTAA 283
                       *    **   *   ***      *    * **  * ******   **** * ****   

consensus_1411#0      --GCCGACCTCACTTACAATGTTGTGGCCTTCTCAGAAATCATGAGCATGGTGTGGAAGC 354
consensus_1411#1      AAGCCGTCCCCGCGTCC--TTCAGCATACCTGACGGCTGCTGATAACGTGATATTTATTT 341
                        **** ** * * * *  *   *    * *  * *        * * ** * *  *   

consensus_1411#0      GCCTCAATGACCACGGCAAGAACTGGAGACACGTGTACAA-GGCTATGACCCTTATGGAA 413
consensus_1411#1      TCTACGGCCCCCAGCGCCCTCCCCCGTGATACAGACGGGCTGGTCTCAATGACTTTGACG 401
                       *  *     ***  **     *  * ** **         **     *    * **   

consensus_1411#0      TACCTGATCAAGACCGGTTCAGAACGCGTTGCTCAGCAATGCCGGGAAAACATTTACGCA 473
consensus_1411#1      TGTTAACCCGTGTCTTGGTTA----ACGCTGTGTGTCGATCCCAAGGTTAGAGAGGCGAC 457
                      *       *  * *  * * *     ** **     * ** **  *   * *    **  

consensus_1411#0      GTCCAGACCCTCAAGGATTTTCAGTACATAGACCGGGACGGCAAAGACCAGGGGGTGAAT 533
consensus_1411#1      GTCCAATGACCCATGGGGCCCCAGCAG--------------------------------- 484
                      *****    * ** **     *** *                                  

consensus_1411#0      GTGCGAGAAAAAGCCAAACAGCTGGTTACACTTCTGAAAGATGAAGAGAGACTAAGAGAG 593
consensus_1411#1      ------------------------------------------------------------
                                                                                  

consensus_1411#0      GAGAGGATCCACGCCCTCAAAACCAAAGAGAAGATGGCACAGACC 638
consensus_1411#1      ---------------------------------------------
                                                                   




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)