These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1411#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 638 fasta sequence [CAGGCTGGTACAGGCATCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAGGAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCATTCTTGTGTAACAGATCGCATCAGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCATCGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTAGAGAGGCGACGTCCAATGACCCATGGGGCCCCAGCAGCTCTCTGATGTCAGAGATTGCCGACCTCACTTACAATGTTGTGGCCTTCTCAGAAATCATGAGCATGGTGTGGAAGCGCCTCAATGACCACGGCAAGAACTGGAGACACGTGTACAAGGCTATGACCCTTATGGAATACCTGATCAAGACCGGTTCAGAACGCGTTGCTCAGCAATGCCGGGAAAACATTTACGCAGTCCAGACCCTCAAGGATTTTCAGTACATAGACCGGGACGGCAAAGACCAGGGGGTGAATGTGCGAGAAAAAGCCAAACAGCTGGTTACACTTCTGAAAGATGAAGAGAGACTAAGAGAGGAGAGGATCCACGCCCTCAAAACCAAAGAGAAGATGGCACAGACC] [+] EMBL CA590092 [CAGGCTGGTACAGGCATCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAGGAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCATTCTTGTGTAACAGATCGCATCAGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCATCGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTAGAGAGGCGACGTCCAATGACCCATGGGGCCCCAGCAGCTCTCTGATGTCAGAGATTGCCGACCTCACTTACAATGTTGTGGCCTTCTCAGAAATCATGAGCATGGTGTGGAAGCGCCTCAATGACCACGGCAAGAACTGGAGACACGTGTACAAGGCTATGACCCTTATGGAATACCTGATCAAGACCGGTTCAGAACGCGTTGCTCAGCAATGCCGGGAAAACATTTACGCAGTCCAGACCCTCAAGGATTTTCAGTACATAGACCGGGACGGCAAAGACCAGGGGGTGAATGTGCGAGAAAAAGCCAAACAGCTGGTTACACTTCTGAAAGATGAAGAGAGACTAAGAGAGGAGAGGATCCACGCCCTCAAAACCAAAGAGAAGATGGCACAGACC] [+] EMBL FR0060311 [ GAGGCCTGACATATGCGACCCAATGTTGCCACAGGAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCATTCTTGTGTAACAGATCGCATCAGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCATCGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTAGAGAGGCGACGTCCAATGACCCATGGGGCCCCAGCAGCTCTCTGATGTCAGAGATTGCCGACCTCACTTACAATGTTGTGGCCTTCTCAGAAATCATGAGCATGGTGTGGAAGCGCCTCAATGACCACGGCAAGAACTGGAGACACGTGTACAAGGCTATGACC ] consensusID : consensus_1411#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [TCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAGGAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCATTCTTGTGTAACAGATCGCATCGGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCATCGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTGTGTTTTGCTCGGCTTAATTGGATTTTCAACACCCCCGCTCTCATTTGTCTGTGATTTAAAAGCCGTCCCCGCGTCCTTCAGCATACCTGACGGCTGCTGATAACGTGATATTTATTTTCTACGGCCCCCAGCGCCCTCCCCCGTGATACAGACGGGCTGGTCTCAATGACTTTGACGTGTTAACCCGTGTCTTGGTTAACGCTGTGTGTCGATCCCAAGGTTAGAGAGGCGACGTCCAATGACCCATGGGGCCCCAGCAG] [+] EMBL CA589548 [TCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAGGAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCATTCTTGTGTAACAGATCGCATCGGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCATCGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTGTGTTTTGCTCGGCTTAATTGGATTTTCAACACCCCCGCTCTCATTTGTCTGTGATTTAAAAGCCGTCCCCGCGTCCTTCAGCATACCTGACGGCTGCTGATAACGTGATATTTATTTTCTACGGCCCCCAGCGCCCTCCCCCGTGATACAGACGGGCTGGTCTCAATGACTTTGACGTGTTAACCCGTGTCTTGGTTAACGCTGTGTGTCGATCCCAAGGTTAGAGAGGCGACGTCCAATGACCCATGGGGCCCCAGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1411#0 CAGGCTGGTACAGGCATCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAG 60 consensus_1411#1 ----------------TCCATCCCCTGAGGCCTGACATATGCGACCCAATGTTGCCACAG 44 ******************************************** consensus_1411#0 GAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCA 120 consensus_1411#1 GAAGCAACAGATGAACAGAGACGCATCACTTCCTGAATGAAAGACCCCCACTCTGCCTCA 104 ************************************************************ consensus_1411#0 TTCTTGTGTAACAGATCGCATCAGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCAT 180 consensus_1411#1 TTCTTGTGTAACAGATCGCATCGGAACCCGACGGCCAGACCGTTGCCATGTCGACTTCAT 164 ********************** ************************************* consensus_1411#0 CGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTA 240 consensus_1411#1 CGCTACGGCGACAAGTAAAGAACATCGTCCACAATTACTCGGAGGCTGAAATCAAGGTTG 224 *********************************************************** consensus_1411#0 -GAGAGGCGACGTCCAATGACCCATGGGGCCCCAGCAGCTCTCTGATGTCAGAGATT--- 296 consensus_1411#1 TGTTTTGCTCGGCTTAATTGGATTTTCAACACCC-CCGCTCTCATTTGTCTGTGATTTAA 283 * ** * *** * * ** * ****** **** * **** consensus_1411#0 --GCCGACCTCACTTACAATGTTGTGGCCTTCTCAGAAATCATGAGCATGGTGTGGAAGC 354 consensus_1411#1 AAGCCGTCCCCGCGTCC--TTCAGCATACCTGACGGCTGCTGATAACGTGATATTTATTT 341 **** ** * * * * * * * * * * * * ** * * * consensus_1411#0 GCCTCAATGACCACGGCAAGAACTGGAGACACGTGTACAA-GGCTATGACCCTTATGGAA 413 consensus_1411#1 TCTACGGCCCCCAGCGCCCTCCCCCGTGATACAGACGGGCTGGTCTCAATGACTTTGACG 401 * * *** ** * * ** ** ** * * ** consensus_1411#0 TACCTGATCAAGACCGGTTCAGAACGCGTTGCTCAGCAATGCCGGGAAAACATTTACGCA 473 consensus_1411#1 TGTTAACCCGTGTCTTGGTTA----ACGCTGTGTGTCGATCCCAAGGTTAGAGAGGCGAC 457 * * * * * * * ** ** * ** ** * * * ** consensus_1411#0 GTCCAGACCCTCAAGGATTTTCAGTACATAGACCGGGACGGCAAAGACCAGGGGGTGAAT 533 consensus_1411#1 GTCCAATGACCCATGGGGCCCCAGCAG--------------------------------- 484 ***** * ** ** *** * consensus_1411#0 GTGCGAGAAAAAGCCAAACAGCTGGTTACACTTCTGAAAGATGAAGAGAGACTAAGAGAG 593 consensus_1411#1 ------------------------------------------------------------ consensus_1411#0 GAGAGGATCCACGCCCTCAAAACCAAAGAGAAGATGGCACAGACC 638 consensus_1411#1 --------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |