These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 633 fasta sequence [TTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGTGAATATGGACATTTTAAAACAACATCCGAAGGAGAAAGTTTTTTAAGAGGGAGCCCAAACCTCAACAACACATGAGTTTCTCTTTGACATCAGCCTTGTACCACTTTTCCCATGACAACCTGAGTTTCTGACCCTGACCCAGGATGGAGGTGGCCCTCTCTGCTCCTCAGGGCCGGGCTAGAGGGGCCGCTCTGCCTCTGAGCCAGCTGCTGGAGGAGAACAGGGGCACAGCCAACATTCCCAATCCTTTGGAATCAAAAATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTGCAGAGCTTCACTTCAGGGCTCTTGAACTACAGAAGGAGTACATCAAGAGGCTGAAACTAATCAACATCTCATCTGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCCAAACATCTTATACCAAAAAGTATCGACTTGTCCCAGGTCTCGCCTATGCACTGAAGGTCCGATTCTGCCCTGACGAGTGGCGTTACTTCTACGACTGCATTCGGGTTCACTGCAAGGGGGATGAGAACCTATTAATTCCAGTTCATGGTTACCCTGTCATCAATGA] [+] EMBL BU807682 [TTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGTGAATATGGACATTTTAAAACAACATCCGAAGGAAAAAGTTTTTTAA AAATAGCCCAAACCTCAACAACACATGAGTTTCTCTTTGACATCAGCCTTGTACCACTTTTCCCATGACAACCTGAGTTTCTGACCCTGACCCAGGATGGAGGTGGCCCTCTCTGCTCCTCAGGGCCTGTCTAGAGGGGCCGCTCTGCCTCTGAGCCAGCTGCTGGAGGAGAACAGGGGCACAGCCCACATTCCCAATCCTTTGGAATCAAAAATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTGCAGAGCTTCACTTCAGTGCTTTTGAACTACAGAAGGATTACATCAAGATCCTGAAACTAATCAACATCTCATCTGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCCAAACATCTTATACCAAAAAGTATCGACTTGTCCCAGGTCTCGCCTATGCACTGAAGGTCCGATTCTGCCCTGACGAGTGGCGTTACTTCTACGACTGCATTCGGGTTCACTGCAAGGGGGATGAGAACCTATTAATTCCAGTTCATGGTTACCCTGTCATCAATGA] [+] EMBL FR0061068 [ tCATCCGAAGAAGAAAGTTTTTTAAGAGGGAGCCCAAACCTCAACAACACATGACTTTCTCTTTGACATCAGCCTTGTACCACTTTTCCCATGACAACCTGAGTTTCTGACCCTGACCCAGGATGGAGGTGGCCCTCTCTGCTCCTCAGGGCCGTGCTAGAGGGGCCGCTCTGCCTCTGAGCCAGCTGCTGGAGGAGAACAGGGGCACAGCCAACATTCCCAATCCTTTGGAATCAAAAATCTATGCCAAACTGTAAAGCAACAGACTAATTCAAGCAGAACCTGCAGAGCTTCACTTCAGGGCTCTTGAACTACAGAAGGAGTACATCAAGAGGCTGAAACTAATCAACAT ] consensusID : consensus_1412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [AGTATTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGCGAATATGGACATTTTAAAACAACATCCGAAGGAAAAAGTTTTTTAAAAATAGCCCAAAGATGGAGGTGGCCCTCTCTGCTCCTCAGGGCCTGTCTAGAGGGGCCGCTCTGCCTCTGAGCCAGCTGCTGGAGGAGAACAGGGGCACAGCCCACATTCCCAATCCTTTGGAATCAAGTACCATTCATTGTTGTTAGGTTTCTGAAATTACACTGTTTTTATAAGGTCATGTTGATTTTTTTCCTTGTAAATTTTGTTTCATTTTTAGAAATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTGCAGAGCTTCACTTCAGTGCTTTTGAACTACAGAAGGATTACATCAAGATCCTGAAACTAATCAACATCTCATCTGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCCAAACATCTTATACCAAAAAGGTCTCC] [+] EMBL CA590297 [AGTATTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGCGAATATGGACATTTTAAAACAACATCCGAAGGAAAAAGTTTTTTAAAAATAGCCCAAAGATGGAGGTGGCCCTCTCTGCTCCTCAGGGCCTGTCTAGAGGGGCCGCTCTGCCTCTGAGCCAGCTGCTGGAGGAGAACAGGGGCACAGCCCACATTCCCAATCCTTTGGAATCAAGTACCATTCATTGTTGTTAGGTTTCTGAAATTACACTGTTTTTATAAGGTCATGTTGATTTTTTTCCTTGTAAATTTTGTTTCATTTTTAGAAATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTGCAGAGCTTCACTTCAGTGCTTTTGAACTACAGAAGGATTACATCAAGATCCTGAAACTAATCAACATCTCATCTGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCCAAACATCTTATACCAAAAAGGTCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1412#0 ----TTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGTGAATATGGACATTTT 56 consensus_1412#1 AGTATTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGCGAATATGGACATTTT 60 **************************************** *************** consensus_1412#0 AAAACAACATCCGAAGGAGAAAGTTTTTTAAGAGGGAGCCCAAACCTCAACAACACATGA 116 consensus_1412#1 AAAACAACATCCGAAGGAAAAAGTTTTTTAA-AAATAGCCCAAAGATGGAGGTGGCCCTC 119 ****************** ************ * ******** * * * consensus_1412#0 GTTTCTCTTTGACATCAGCCTTGTACCACTTTTCCCATGACAACCTGAGTTTCTGACCCT 176 consensus_1412#1 TCTGCTCCTCAGGGCCTGTCTAGAGGGGCCGCTCTGCCTCTGAGCC-AGCTGCTGGAGGA 178 * *** * * * ** * * ** * * ** * *** consensus_1412#0 GACCCAGGATGGAGGTGGCCCTCTCTGCTCCTCAGGGCCGGGCTAGAGGGGCCGCTCT-- 234 consensus_1412#1 GAACAGGGGCACAGCCCACATTCCCAATCCTTTGGAATCAAGTACCATTCATTGTTGTTA 238 ** * ** ** * ** * * * * * * * * * * consensus_1412#0 -GCCTCTGAGC---CAGCTGCTGGAGGAGAACAGGGGCACAGCCAACATTCCCAATCCTT 290 consensus_1412#1 GGTTTCTGAAATTACACTGTTTTTATAAGGTCATGTTGATTTTTTTCCTTGTAAATTTTG 298 * ***** ** * * ** ** * * * ** *** * consensus_1412#0 TGGAATC---AAAAATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTG 347 consensus_1412#1 TTTCATTTTTAGAAATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTG 358 * ** * ************************************************ consensus_1412#0 CAGAGCTTCACTTCAGGGCTCTTGAACTACAGAAGGAGTACATCAAGAGGCTGAAACTAA 407 consensus_1412#1 CAGAGCTTCACTTCAGTGCTTTTGAACTACAGAAGGATTACATCAAGATCCTGAAACTAA 418 **************** *** **************** ********** ********** consensus_1412#0 TCAACATCTCATCTGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCC 467 consensus_1412#1 TCAACATCTCATCTGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCC 478 ************************************************************ consensus_1412#0 AAACATCTTATACCAAAAAGTATCGACTTGTCCCAGGTCTCGCCTATGCACTGAAGGTCC 527 consensus_1412#1 AAACATCTTATACCAAAAAG-GTCTCC--------------------------------- 504 ******************** ** * consensus_1412#0 GATTCTGCCCTGACGAGTGGCGTTACTTCTACGACTGCATTCGGGTTCACTGCAAGGGGG 587 consensus_1412#1 ------------------------------------------------------------ consensus_1412#0 ATGAGAACCTATTAATTCCAGTTCATGGTTACCCTGTCATCAATGA 633 consensus_1412#1 ---------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |