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Takifugu rubripes
cluster # 1412 cluster # 1412       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1412#0 length = 633 sequences # 2  
consensus_1412#1 length = 504 sequences # 1  

consensusID : consensus_1412#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 633
fasta sequence
                              [TTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGTGAATATGGACATTTTAAAACAACATCCGAAGGAGAAAGTTTTTTAAGAGGGAGCCCAAACCTCAACAACACATGAGTTTCTCTTTGACATCAGCCTTGTACCACTTTTCCCATGACAACCTGAGTTTCTGACCCTGACCCAGGATGGAGGTGGCCCTCTCTGCTCCTCAGGGCCGGGCTAGAGGGGCCGCTCTGCCTCTGAGCCAGCTGCTGGAGGAGAACAGGGGCACAGCCAACATTCCCAATCCTTTGGAATCAAAAATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTGCAGAGCTTCACTTCAGGGCTCTTGAACTACAGAAGGAGTACATCAAGAGGCTGAAACTAATCAACATCTCATCTGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCCAAACATCTTATACCAAAAAGTATCGACTTGTCCCAGGTCTCGCCTATGCACTGAAGGTCCGATTCTGCCCTGACGAGTGGCGTTACTTCTACGACTGCATTCGGGTTCACTGCAAGGGGGATGAGAACCTATTAATTCCAGTTCATGGTTACCCTGTCATCAATGA]

[+] EMBL BU807682             [TTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGTGAATATGGACATTTTAAAACAACATCCGAAGGAAAAAGTTTTTTAA AAATAGCCCAAACCTCAACAACACATGAGTTTCTCTTTGACATCAGCCTTGTACCACTTTTCCCATGACAACCTGAGTTTCTGACCCTGACCCAGGATGGAGGTGGCCCTCTCTGCTCCTCAGGGCCTGTCTAGAGGGGCCGCTCTGCCTCTGAGCCAGCTGCTGGAGGAGAACAGGGGCACAGCCCACATTCCCAATCCTTTGGAATCAAAAATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTGCAGAGCTTCACTTCAGTGCTTTTGAACTACAGAAGGATTACATCAAGATCCTGAAACTAATCAACATCTCATCTGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCCAAACATCTTATACCAAAAAGTATCGACTTGTCCCAGGTCTCGCCTATGCACTGAAGGTCCGATTCTGCCCTGACGAGTGGCGTTACTTCTACGACTGCATTCGGGTTCACTGCAAGGGGGATGAGAACCTATTAATTCCAGTTCATGGTTACCCTGTCATCAATGA]
[+] EMBL FR0061068            [                                                              tCATCCGAAGAAGAAAGTTTTTTAAGAGGGAGCCCAAACCTCAACAACACATGACTTTCTCTTTGACATCAGCCTTGTACCACTTTTCCCATGACAACCTGAGTTTCTGACCCTGACCCAGGATGGAGGTGGCCCTCTCTGCTCCTCAGGGCCGTGCTAGAGGGGCCGCTCTGCCTCTGAGCCAGCTGCTGGAGGAGAACAGGGGCACAGCCAACATTCCCAATCCTTTGGAATCAAAAATCTATGCCAAACTGTAAAGCAACAGACTAATTCAAGCAGAACCTGCAGAGCTTCACTTCAGGGCTCTTGAACTACAGAAGGAGTACATCAAGAGGCTGAAACTAATCAACAT                                                                                                                                                                                                                           ]


>consensus_1412#0 TTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGTGAATATGGACATTTTAAAA CAACATCCGAAGGAGAAAGTTTTTTAAGAGGGAGCCCAAACCTCAACAACACATGAGTTT CTCTTTGACATCAGCCTTGTACCACTTTTCCCATGACAACCTGAGTTTCTGACCCTGACC CAGGATGGAGGTGGCCCTCTCTGCTCCTCAGGGCCGGGCTAGAGGGGCCGCTCTGCCTCT GAGCCAGCTGCTGGAGGAGAACAGGGGCACAGCCAACATTCCCAATCCTTTGGAATCAAA AATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTGCAGAGCTTCACTT CAGGGCTCTTGAACTACAGAAGGAGTACATCAAGAGGCTGAAACTAATCAACATCTCATC TGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCCAAACATCTTATAC CAAAAAGTATCGACTTGTCCCAGGTCTCGCCTATGCACTGAAGGTCCGATTCTGCCCTGA CGAGTGGCGTTACTTCTACGACTGCATTCGGGTTCACTGCAAGGGGGATGAGAACCTATT AATTCCAGTTCATGGTTACCCTGTCATCAATGA



consensusID : consensus_1412#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence
                              [AGTATTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGCGAATATGGACATTTTAAAACAACATCCGAAGGAAAAAGTTTTTTAAAAATAGCCCAAAGATGGAGGTGGCCCTCTCTGCTCCTCAGGGCCTGTCTAGAGGGGCCGCTCTGCCTCTGAGCCAGCTGCTGGAGGAGAACAGGGGCACAGCCCACATTCCCAATCCTTTGGAATCAAGTACCATTCATTGTTGTTAGGTTTCTGAAATTACACTGTTTTTATAAGGTCATGTTGATTTTTTTCCTTGTAAATTTTGTTTCATTTTTAGAAATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTGCAGAGCTTCACTTCAGTGCTTTTGAACTACAGAAGGATTACATCAAGATCCTGAAACTAATCAACATCTCATCTGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCCAAACATCTTATACCAAAAAGGTCTCC]

[+] EMBL CA590297             [AGTATTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGCGAATATGGACATTTTAAAACAACATCCGAAGGAAAAAGTTTTTTAAAAATAGCCCAAAGATGGAGGTGGCCCTCTCTGCTCCTCAGGGCCTGTCTAGAGGGGCCGCTCTGCCTCTGAGCCAGCTGCTGGAGGAGAACAGGGGCACAGCCCACATTCCCAATCCTTTGGAATCAAGTACCATTCATTGTTGTTAGGTTTCTGAAATTACACTGTTTTTATAAGGTCATGTTGATTTTTTTCCTTGTAAATTTTGTTTCATTTTTAGAAATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTGCAGAGCTTCACTTCAGTGCTTTTGAACTACAGAAGGATTACATCAAGATCCTGAAACTAATCAACATCTCATCTGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCCAAACATCTTATACCAAAAAGGTCTCC]


>consensus_1412#1 AGTATTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGCGAATATGGACATTTT AAAACAACATCCGAAGGAAAAAGTTTTTTAAAAATAGCCCAAAGATGGAGGTGGCCCTCT CTGCTCCTCAGGGCCTGTCTAGAGGGGCCGCTCTGCCTCTGAGCCAGCTGCTGGAGGAGA ACAGGGGCACAGCCCACATTCCCAATCCTTTGGAATCAAGTACCATTCATTGTTGTTAGG TTTCTGAAATTACACTGTTTTTATAAGGTCATGTTGATTTTTTTCCTTGTAAATTTTGTT TCATTTTTAGAAATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTGCA GAGCTTCACTTCAGTGCTTTTGAACTACAGAAGGATTACATCAAGATCCTGAAACTAATC AACATCTCATCTGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCCAA ACATCTTATACCAAAAAGGTCTCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1412#0      ----TTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGTGAATATGGACATTTT 56
consensus_1412#1      AGTATTGGTTTAGCGTTCTCTGAATGAATTTAAGCGGAAGTCAGCGAATATGGACATTTT 60
                          **************************************** ***************

consensus_1412#0      AAAACAACATCCGAAGGAGAAAGTTTTTTAAGAGGGAGCCCAAACCTCAACAACACATGA 116
consensus_1412#1      AAAACAACATCCGAAGGAAAAAGTTTTTTAA-AAATAGCCCAAAGATGGAGGTGGCCCTC 119
                      ****************** ************ *   ********  *  *     *    

consensus_1412#0      GTTTCTCTTTGACATCAGCCTTGTACCACTTTTCCCATGACAACCTGAGTTTCTGACCCT 176
consensus_1412#1      TCTGCTCCTCAGGGCCTGTCTAGAGGGGCCGCTCTGCCTCTGAGCC-AGCTGCTGGAGGA 178
                        * *** *      * * ** *     *   **        * *  ** * ***     

consensus_1412#0      GACCCAGGATGGAGGTGGCCCTCTCTGCTCCTCAGGGCCGGGCTAGAGGGGCCGCTCT-- 234
consensus_1412#1      GAACAGGGGCACAGCCCACATTCCCAATCCTTTGGAATCAAGTACCATTCATTGTTGTTA 238
                      ** *  **    **    *  ** *    * *  *   *  *    *      * * *  

consensus_1412#0      -GCCTCTGAGC---CAGCTGCTGGAGGAGAACAGGGGCACAGCCAACATTCCCAATCCTT 290
consensus_1412#1      GGTTTCTGAAATTACACTGTTTTTATAAGGTCATGTTGATTTTTTTCCTTGTAAATTTTG 298
                       *  *****     **     *  *  **  ** *   *       * **   ***  * 

consensus_1412#0      TGGAATC---AAAAATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTG 347
consensus_1412#1      TTTCATTTTTAGAAATCTATGCCAAACTGAAAAGCAACAGACTAATTCAAGCAGAACCTG 358
                      *   **    * ************************************************

consensus_1412#0      CAGAGCTTCACTTCAGGGCTCTTGAACTACAGAAGGAGTACATCAAGAGGCTGAAACTAA 407
consensus_1412#1      CAGAGCTTCACTTCAGTGCTTTTGAACTACAGAAGGATTACATCAAGATCCTGAAACTAA 418
                      **************** *** **************** **********  **********

consensus_1412#0      TCAACATCTCATCTGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCC 467
consensus_1412#1      TCAACATCTCATCTGAAGTTATGAATATTCACATCATTCCCACTCAAACCAGGCACTTCC 478
                      ************************************************************

consensus_1412#0      AAACATCTTATACCAAAAAGTATCGACTTGTCCCAGGTCTCGCCTATGCACTGAAGGTCC 527
consensus_1412#1      AAACATCTTATACCAAAAAG-GTCTCC--------------------------------- 504
                      ********************  **  *                                 

consensus_1412#0      GATTCTGCCCTGACGAGTGGCGTTACTTCTACGACTGCATTCGGGTTCACTGCAAGGGGG 587
consensus_1412#1      ------------------------------------------------------------
                                                                                  

consensus_1412#0      ATGAGAACCTATTAATTCCAGTTCATGGTTACCCTGTCATCAATGA 633
consensus_1412#1      ----------------------------------------------
                                                                    




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)