These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1429#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 632 fasta sequence [CTTCCCCTCTGTCTGAATGACCGATCATGGCACTCGCACTGATTTTGTGGGCTTTTATTTCAGGAGCTTCAGCCTTTCACCTGCTGCAACAAGATGAACGAGAGTTCAGATCATGGATGGCGCTGCACAACAAGGCGTACGTGAAGGACTTCGACCAGAGACTGCAGGTATTCACTGAGAACAAGAGGAGGATTGACAAACACAATGAGGGAAACCATTCTTTCGCCATGAGGCTGAACCAGTATTCAGACATGACTTTTGCCGAGTTCAGGAAGCATTTCCTCTGGGCTGAACCACAGAACTGCTCTGCCACAAAAGGCAGTTACATCCAAACAAACAGCCCACGCCCGGAATCTATCGACTGGAGAAAAAAGGGGAATTACGTGACACCTGTGAAGAATCAGGGAAGCTGTGGTAGCTGCTGGACCTTTTCCACAACTGGCTGTCTGGAGTCCGTAACGGCCATCAACACCGGGAAGCTTGTCCCCCTGTCAGAACAACAGCTGGTGGACTGTGCGCAGGACTTCAACAACCATGGTTGCAACGGAGGTCTTCCAAGCCAAGCCTTTGAATACATCAAATACAATAAGGGACTGATGACTGAGAGCGACTACCCATACACAGCCTTTGAG] [+] EMBL CA845122 [CTTCCCCTCTGTCTGAATGACCGATCATGGCACTCGCACTGATTTTGTGGGCTTTTATTTCAGTATCTTCAGCCTTTCACCTGCTGCAACAAGATGAACGAGAGTTCAGATCATGGATGGCGCTGCACAACAAGGCGTACGTGAAGGACTTCGACCAGAGACTGCAGGTATTCACTGAGAACAAGAGGAGGATTGACAAACACAATGAGGGAAACCATTCTTTCGCCATGAGGCTGAACCAGTATTCAGACATGACTTTTGCTGAGTTCAGGAAGCATTTCCTCTGGGCTGAACCACAGAACTGCTCTGCCACAAAAGGCAGTTACATCCAAACAAACAGCCCACGCCCGGAATCTATCGACTGGAGAAAAAAGGGGAATTACGTGACACCTGTGAAGAATCAGGGAAGCTGTGGTAGCTGCTGGACCTTTTCCACAACTGGCTGTCTGGAGTCCGTAACGGCCATCAACACCGGGAAGCTTGTCCCCCTGTCAGAACAACAGCTGGTGGACTGTGCGCAGGACTTCAACAACCATGGTTGCAACGGAGGTCTTCCAAGCCAAGCCTTTGAATACATCAAATACAATAAGGGACTGATGACTGAGAGCGACTACCCATACACAGCCTTTGAG] [+] EMBL FR0058408 [ TTATTTCAGGAGCTTCAGCCTTTCACCTGCTGCAACAAGATGAACGAGAGTTCAGATCATGGATGGCGCTGCACAACAAGGCGTACGTGAAGGACTTCGACCAGAGACTGCAGGTATTCACTGAGAACAAGAGGAGGATTGACAAACACAATGAGGGAAACCATTCTTTCGCCATGAGGCTGAACCAGTATTCAGACATGACTTTTGCCGAGTTCAGGAAGCATTTCCTCTGGGCTGAACCACAGAACTGCTCTGCCACAAAAGGCAGTTACATCCAAACAAACAGCCCACACCCGGAATCTATCGACTGGAGAAAAAAGGGGAATTACGTGACACCTGTGAAGAATCAGGGAAGCTGTGGTAGCTGCTGGACCTTTTCCACAACTGGCTGTCTGGAGTCCGTAACGGCCA ] consensusID : consensus_1429#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [TTGGATCTGTCGTCGCTTTTCGGTTTTAACATACAGCTAATATATAAATAAAATCTGCCTTTTCCGTCCTGGGTTTGTTCCCCTCGCTGCAGGGAAGCTGTGGTAGCTGCTGGACCTTTTCCACAACTGGCTGGCTGGAGTCCGTAACGGCCATCAACACCGGGAAACTTGTCCCCCTGGTGACTGATGTTTCCTTAATGCAGAACATCCACCTTGTGTATCAACACAGCTCCTTTGACCCCTCGGGAATATTTACTGTCACCTTCAATTCTTACATTTATTAGTCAGAAGAACAGCTGGTGGGACTGTGCGCAGGACTTCAACAACCATGGTTGCAACGGGTGAGTGGGACA] [+] EMBL FR0057024 [TTGGATCTGTCGTCGCTTTTCGGTTTTAACATACAGCTAATATATAAATAAAATCTGCCTTTTCCGTCCTGGGTTTGTTCCCCTCGCTGCAGGGAAGCTGTGGTAGCTGCTGGACCTTTTCCACAACTGGCTGGCTGGAGTCCGTAACGGCCATCAACACCGGGAAACTTGTCCCCCTGGTGACTGATGTTTCCTTAATGCAGAACATCCACCTTGTGTATCAACACAGCTCCTTTGACCCCTCGGGAATATTTACTGTCACCTTCAATTCTTACATTTATTAGTCAGAAGAACAGCTGGTGGGACTGTGCGCAGGACTTCAACAACCATGGTTGCAACGGGTGAGTGGGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1429#0 CTTCCCCTCTGTCTGAATGACCGATCATGGCACTCGCACTGATTTTGTGGGCTTTTATTT 60 consensus_1429#1 ------------------------------------------------------------ consensus_1429#0 CAGGAGCTTCAGCCTTTCACCTGCTGCAACAAGATGAACGAGAGTTCAGATCATGGATGG 120 consensus_1429#1 ------------------------------------------------------------ consensus_1429#0 CGCTGCACAACAAGGCGTACGTGAAGGACTTCGACCAGAGACTGCAGGTATTCACTGAGA 180 consensus_1429#1 ------------------------------------------------------------ consensus_1429#0 ACAAGAGGAGGATTGACAAACACAATGAGGGAAACCATTCTTTCGCCATGAGGCTGAACC 240 consensus_1429#1 ------------------------------------------------------------ consensus_1429#0 AGTATTCAGACATGACTTTTGCCGAGTTCAGGAAGCATTTCCTCTGGGCTGAACCACAGA 300 consensus_1429#1 ------------------------------------------------------------ consensus_1429#0 ACTGCTCTGCCACAAAAGGCAGTTACATCCAAACAAACAGCCCACGCCCGGAATCTATCG 360 consensus_1429#1 TTGGATCTGTCGTC----GCTTTTCGGTTTTAACATACAGCTAATATATAAATAAAATCT 56 * **** * ** ** * **** ***** * * *** consensus_1429#0 ACTGGAGAAAAAAGGGGAATTACGTGACACCTGTGAAGAATCAGGGAAGCTGTGGTAGCT 420 consensus_1429#1 GCCTTTTCCGTCCTGGG---TTTGTTCCCCTCGCTG-----CAGGGAAGCTGTGGTAGCT 108 * *** * ** * * * ******************* consensus_1429#0 GCTGGACCTTTTCCACAACTGGCTGTCTGGAGTCCGTAACGGCCATCAACACCGGGAAGC 480 consensus_1429#1 GCTGGACCTTTTCCACAACTGGCTGGCTGGAGTCCGTAACGGCCATCAACACCGGGAAAC 168 ************************* ******************************** * consensus_1429#0 TTGTCCCCCTG------------TCAGAACAACAGCTGGTGGACTGTGCGCAGGACTTCA 528 consensus_1429#1 TTGTCCCCCTGGTGACTGATGTTTCCTTAATGCAGAACATCCACCTTGTGTATCAACACA 228 *********** ** * *** * ** ** * * * ** consensus_1429#0 ACAACCATGGTTGCAACGGAGGTCTT----CCAAGCCAAGCCTTTGAATACATCAAATAC 584 consensus_1429#1 GCTCCTTTGACCCCTCGGGAATATTTACTGTCACCTTCAATTCTTACATTTATTAGTCAG 288 * * ** * *** ** ** * ** ** ** * * consensus_1429#0 AATAAGGGACTGATG--ACTGAGAGCGACTACCCATACACAGCCTTTGAG---------- 632 consensus_1429#1 AAGAACAG-CTGGTGGGACTGTGCGCAGGACTTCAACAACCATGGTTGCAACGGGTGAGT 347 ** ** * *** ** **** * ** ** ** *** consensus_1429#0 ------ consensus_1429#1 GGGACA 353 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |