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Takifugu rubripes
cluster # 1429 cluster # 1429       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1429#0 length = 632 sequences # 2  
consensus_1429#1 length = 353 sequences # 1  

consensusID : consensus_1429#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 632
fasta sequence
                              [CTTCCCCTCTGTCTGAATGACCGATCATGGCACTCGCACTGATTTTGTGGGCTTTTATTTCAGGAGCTTCAGCCTTTCACCTGCTGCAACAAGATGAACGAGAGTTCAGATCATGGATGGCGCTGCACAACAAGGCGTACGTGAAGGACTTCGACCAGAGACTGCAGGTATTCACTGAGAACAAGAGGAGGATTGACAAACACAATGAGGGAAACCATTCTTTCGCCATGAGGCTGAACCAGTATTCAGACATGACTTTTGCCGAGTTCAGGAAGCATTTCCTCTGGGCTGAACCACAGAACTGCTCTGCCACAAAAGGCAGTTACATCCAAACAAACAGCCCACGCCCGGAATCTATCGACTGGAGAAAAAAGGGGAATTACGTGACACCTGTGAAGAATCAGGGAAGCTGTGGTAGCTGCTGGACCTTTTCCACAACTGGCTGTCTGGAGTCCGTAACGGCCATCAACACCGGGAAGCTTGTCCCCCTGTCAGAACAACAGCTGGTGGACTGTGCGCAGGACTTCAACAACCATGGTTGCAACGGAGGTCTTCCAAGCCAAGCCTTTGAATACATCAAATACAATAAGGGACTGATGACTGAGAGCGACTACCCATACACAGCCTTTGAG]

[+] EMBL CA845122             [CTTCCCCTCTGTCTGAATGACCGATCATGGCACTCGCACTGATTTTGTGGGCTTTTATTTCAGTATCTTCAGCCTTTCACCTGCTGCAACAAGATGAACGAGAGTTCAGATCATGGATGGCGCTGCACAACAAGGCGTACGTGAAGGACTTCGACCAGAGACTGCAGGTATTCACTGAGAACAAGAGGAGGATTGACAAACACAATGAGGGAAACCATTCTTTCGCCATGAGGCTGAACCAGTATTCAGACATGACTTTTGCTGAGTTCAGGAAGCATTTCCTCTGGGCTGAACCACAGAACTGCTCTGCCACAAAAGGCAGTTACATCCAAACAAACAGCCCACGCCCGGAATCTATCGACTGGAGAAAAAAGGGGAATTACGTGACACCTGTGAAGAATCAGGGAAGCTGTGGTAGCTGCTGGACCTTTTCCACAACTGGCTGTCTGGAGTCCGTAACGGCCATCAACACCGGGAAGCTTGTCCCCCTGTCAGAACAACAGCTGGTGGACTGTGCGCAGGACTTCAACAACCATGGTTGCAACGGAGGTCTTCCAAGCCAAGCCTTTGAATACATCAAATACAATAAGGGACTGATGACTGAGAGCGACTACCCATACACAGCCTTTGAG]
[+] EMBL FR0058408            [                                                      TTATTTCAGGAGCTTCAGCCTTTCACCTGCTGCAACAAGATGAACGAGAGTTCAGATCATGGATGGCGCTGCACAACAAGGCGTACGTGAAGGACTTCGACCAGAGACTGCAGGTATTCACTGAGAACAAGAGGAGGATTGACAAACACAATGAGGGAAACCATTCTTTCGCCATGAGGCTGAACCAGTATTCAGACATGACTTTTGCCGAGTTCAGGAAGCATTTCCTCTGGGCTGAACCACAGAACTGCTCTGCCACAAAAGGCAGTTACATCCAAACAAACAGCCCACACCCGGAATCTATCGACTGGAGAAAAAAGGGGAATTACGTGACACCTGTGAAGAATCAGGGAAGCTGTGGTAGCTGCTGGACCTTTTCCACAACTGGCTGTCTGGAGTCCGTAACGGCCA                                                                                                                                                                       ]


>consensus_1429#0 CTTCCCCTCTGTCTGAATGACCGATCATGGCACTCGCACTGATTTTGTGGGCTTTTATTT CAGGAGCTTCAGCCTTTCACCTGCTGCAACAAGATGAACGAGAGTTCAGATCATGGATGG CGCTGCACAACAAGGCGTACGTGAAGGACTTCGACCAGAGACTGCAGGTATTCACTGAGA ACAAGAGGAGGATTGACAAACACAATGAGGGAAACCATTCTTTCGCCATGAGGCTGAACC AGTATTCAGACATGACTTTTGCCGAGTTCAGGAAGCATTTCCTCTGGGCTGAACCACAGA ACTGCTCTGCCACAAAAGGCAGTTACATCCAAACAAACAGCCCACGCCCGGAATCTATCG ACTGGAGAAAAAAGGGGAATTACGTGACACCTGTGAAGAATCAGGGAAGCTGTGGTAGCT GCTGGACCTTTTCCACAACTGGCTGTCTGGAGTCCGTAACGGCCATCAACACCGGGAAGC TTGTCCCCCTGTCAGAACAACAGCTGGTGGACTGTGCGCAGGACTTCAACAACCATGGTT GCAACGGAGGTCTTCCAAGCCAAGCCTTTGAATACATCAAATACAATAAGGGACTGATGA CTGAGAGCGACTACCCATACACAGCCTTTGAG



consensusID : consensus_1429#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence
                              [TTGGATCTGTCGTCGCTTTTCGGTTTTAACATACAGCTAATATATAAATAAAATCTGCCTTTTCCGTCCTGGGTTTGTTCCCCTCGCTGCAGGGAAGCTGTGGTAGCTGCTGGACCTTTTCCACAACTGGCTGGCTGGAGTCCGTAACGGCCATCAACACCGGGAAACTTGTCCCCCTGGTGACTGATGTTTCCTTAATGCAGAACATCCACCTTGTGTATCAACACAGCTCCTTTGACCCCTCGGGAATATTTACTGTCACCTTCAATTCTTACATTTATTAGTCAGAAGAACAGCTGGTGGGACTGTGCGCAGGACTTCAACAACCATGGTTGCAACGGGTGAGTGGGACA]

[+] EMBL FR0057024            [TTGGATCTGTCGTCGCTTTTCGGTTTTAACATACAGCTAATATATAAATAAAATCTGCCTTTTCCGTCCTGGGTTTGTTCCCCTCGCTGCAGGGAAGCTGTGGTAGCTGCTGGACCTTTTCCACAACTGGCTGGCTGGAGTCCGTAACGGCCATCAACACCGGGAAACTTGTCCCCCTGGTGACTGATGTTTCCTTAATGCAGAACATCCACCTTGTGTATCAACACAGCTCCTTTGACCCCTCGGGAATATTTACTGTCACCTTCAATTCTTACATTTATTAGTCAGAAGAACAGCTGGTGGGACTGTGCGCAGGACTTCAACAACCATGGTTGCAACGGGTGAGTGGGACA]


>consensus_1429#1 TTGGATCTGTCGTCGCTTTTCGGTTTTAACATACAGCTAATATATAAATAAAATCTGCCT TTTCCGTCCTGGGTTTGTTCCCCTCGCTGCAGGGAAGCTGTGGTAGCTGCTGGACCTTTT CCACAACTGGCTGGCTGGAGTCCGTAACGGCCATCAACACCGGGAAACTTGTCCCCCTGG TGACTGATGTTTCCTTAATGCAGAACATCCACCTTGTGTATCAACACAGCTCCTTTGACC CCTCGGGAATATTTACTGTCACCTTCAATTCTTACATTTATTAGTCAGAAGAACAGCTGG TGGGACTGTGCGCAGGACTTCAACAACCATGGTTGCAACGGGTGAGTGGGACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1429#0      CTTCCCCTCTGTCTGAATGACCGATCATGGCACTCGCACTGATTTTGTGGGCTTTTATTT 60
consensus_1429#1      ------------------------------------------------------------
                                                                                  

consensus_1429#0      CAGGAGCTTCAGCCTTTCACCTGCTGCAACAAGATGAACGAGAGTTCAGATCATGGATGG 120
consensus_1429#1      ------------------------------------------------------------
                                                                                  

consensus_1429#0      CGCTGCACAACAAGGCGTACGTGAAGGACTTCGACCAGAGACTGCAGGTATTCACTGAGA 180
consensus_1429#1      ------------------------------------------------------------
                                                                                  

consensus_1429#0      ACAAGAGGAGGATTGACAAACACAATGAGGGAAACCATTCTTTCGCCATGAGGCTGAACC 240
consensus_1429#1      ------------------------------------------------------------
                                                                                  

consensus_1429#0      AGTATTCAGACATGACTTTTGCCGAGTTCAGGAAGCATTTCCTCTGGGCTGAACCACAGA 300
consensus_1429#1      ------------------------------------------------------------
                                                                                  

consensus_1429#0      ACTGCTCTGCCACAAAAGGCAGTTACATCCAAACAAACAGCCCACGCCCGGAATCTATCG 360
consensus_1429#1      TTGGATCTGTCGTC----GCTTTTCGGTTTTAACATACAGCTAATATATAAATAAAATCT 56
                         * **** *       **  **   *   **** *****  *       *    *** 

consensus_1429#0      ACTGGAGAAAAAAGGGGAATTACGTGACACCTGTGAAGAATCAGGGAAGCTGTGGTAGCT 420
consensus_1429#1      GCCTTTTCCGTCCTGGG---TTTGTTCCCCTCGCTG-----CAGGGAAGCTGTGGTAGCT 108
                       *            ***   *  **  * *  *        *******************

consensus_1429#0      GCTGGACCTTTTCCACAACTGGCTGTCTGGAGTCCGTAACGGCCATCAACACCGGGAAGC 480
consensus_1429#1      GCTGGACCTTTTCCACAACTGGCTGGCTGGAGTCCGTAACGGCCATCAACACCGGGAAAC 168
                      ************************* ******************************** *

consensus_1429#0      TTGTCCCCCTG------------TCAGAACAACAGCTGGTGGACTGTGCGCAGGACTTCA 528
consensus_1429#1      TTGTCCCCCTGGTGACTGATGTTTCCTTAATGCAGAACATCCACCTTGTGTATCAACACA 228
                      ***********            **   *   ***    *  **  ** * *  *   **

consensus_1429#0      ACAACCATGGTTGCAACGGAGGTCTT----CCAAGCCAAGCCTTTGAATACATCAAATAC 584
consensus_1429#1      GCTCCTTTGACCCCTCGGGAATATTTACTGTCACCTTCAATTCTTACATTTATTAGTCAG 288
                       *  *  **    *   ***    **     **     *    **  **  ** *   * 

consensus_1429#0      AATAAGGGACTGATG--ACTGAGAGCGACTACCCATACACAGCCTTTGAG---------- 632
consensus_1429#1      AAGAACAG-CTGGTGGGACTGTGCGCAGGACTTCAACAACCATGGTTGCAACGGGTGAGT 347
                      ** **  * *** **  **** * **       **   **     ***            

consensus_1429#0      ------
consensus_1429#1      GGGACA 353
                            




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)