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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1431#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 829 fasta sequence
[GCGCTTATGAGAGACAGAGCAGAGTTCATGGGACTTTTCCCACACAAAGTCTTAACCTTGCAAGATTCCAAGAACAGTTTGTTTTTGTGAGCGAGTCTTTCCCTAACTCTAAAACTTGTTTGGGGATTACCGGAGAGACTTCAGACATCAGTGATGCCAAACAGCTTAGCCTGAAGGACCTCCTAACAACATGCACCGCTTTTCTTGTCCCAGTATGATGATGGACCCTCAGGTGTGTCCACCTCCTCTGAGCAGCAACCAGTCAATGGTGAGCAGCATGGAGAAATCCCCGGGGAGCACATTTAAGCCTGGCCACTCCCGGAGCAGCAGCACTGGCTCTATAAGAAATTCAAAACAGTCCAATAACTGGGAAGTGATGAACGACTTGCACCAGGTGGACATATGTACAGGTCCTGGCTCATCTATCGACCTCAGCATCCCCGGGATCTGTGAGGGCTACCTGATGAAGAGGAGGAAGTATCCCCTCAAAGGCTGGCACAAGCGGTACTTCCTGTTAGAGAAAGGAATTCTCAAGTACTCAAAGACACAGCAAGATATTCAGAGAGGGAAACTCCATGGCTCTCTGGACATAAGCTCTGCAGTATTGTCCATAAATAAGAAAGCCAAACGCATAGATCTAGATGCAGGAGACAACCTGTACCACCTCAAGGCAAAGACCCATGAGCTCTTTTACATATGGCTGACCAAGCTTTGTGCTCACCGTGTGTTTAAAAAAAATGAAGCAATGAGCGTTGGCCAGGGTGTCTTTCATGCATTGTCCTTGGCGCCAAGTTCCCTTCCAGCGATGGCCTCTCTTGCCCAGAAAAAC]
[+] EMBL CA846120 [GCGCTTATGAGAGACAGAGCAGAGTTCATGGGACTTTTCCCACACAAAGTCTTAACCTTGCAAGATTCCAAGAACAGTTTGTTTTTGTGAGTGAGTCTTTCCCTAACTCTAAAACTTGTTTGTGGATTACCAGAGAGACTTCAGACATCAGTGATGCCAAACAGCTTAGCCTGAAGGACCTCCTAACAACATGCACCGCTTTTCTTGTCCCAGTATGATGATGGACCCTCAGGTGTGTCCACCTCCTCTGAGCAGCAACCAGTCAATGGTGAGCAGCATGGAGAAATCCCCGGGGAGCACATTTAAGCCTGGCCACTCCCGGAGCAGCAGCACTGGCTCTATAAGAAATTCAAAACAGTCCAATAACTGGGAAGTGATGAACGACTTGCACCAGGTGGACATATGTACAGGTCCTGGCTCATCTATCGACCTCAGCATCCCCGGGATCTGTGAGGGCTACCTGATGAAGAGGAGGAAGTATCCCCTCAAAGGCTGGCACAAGCGGTACTTCCTGTTAGAGAAAGGAATTCTCAAGTACTCAAAGACACAGCAAGATATTCAGAGAGGGAAACTCCATGGCTCTCTGGACATAAGCTCTGCAGTATTGTCCATAAATAAGAAAGCCAAACGCATAGATCTAGATGCAGGAGACAACCTGTACCACCTCAAGGCAAAGACCCATGAGCTCTTTTACATATGGCTGACCAAGCTTTGTGCTCACCGTGTGTTTAAAAAAAATGAAGCAATGAGCGTTGGCCAGGGTGTCTTTCATGCATTGTCCTTGGCGCCAAGTTCCCTTCCAGCGATGGCCTCTCTTGCCCAGAAAAAC]
[+] EMBL FR0058804 [ TCCAAGAACAGTTTGTTTTTGTGAGCGAGTCTTTCCCTAACTTTAAAACTTGTTTGGGGATTACCGGAGAGACTTCAGACATCAGTGATGCCAAACAGCTTAGCCTGAAGGACCTTCTAAC ]
consensusID : consensus_1431#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence
[TTTTTGCAAGACTCCAAGAACAGTTTGGGGGTGTGAGTGAGTCTTTCCCTAACTCTAAAACTTGTCTGTGGATTACCAGAGAGACTTCAGACATCAGTATGATGATGGACCCTCAGGTGTGTCCACCTCCTCTGAGCAGCAACCAGTCAATGGTGAGCAGCATGGAGAAATCCCCGGGGAGCACATTTAAGCCTGGCCACTCGCGGAGCAGCAGCACTGGCTCTATAAGAAATTCAAAACAGTCCAATAACTGGGAAGGGATGAACGACTTGCACCAGGTGGACATATGTACAGGGCCTGGCTCATCTATCGACCTCAGCATCCGCGGGATCTGTGAGGGCTACCTGATGAAGAGGAGGAAGTATCCCCTCAAAGGCTGGCACAAGCGGTACTTCCTGTTAGAGAAAGGGATTCTTAAGTTCTCAAAGACACAGCAAGGATATTCAGAGAGGGAGACTCCATGGGTTCTCTTGGCCATAAGCTCTGCAGTATTTGTC]
[+] EMBL FR0058581 [TTTTTGCAAGACTCCAAGAACAGTTTGGGGGTGTGAGTGAGTCTTTCCCTAACTCTAAAACTTGTCTGTGGATTACCAGAGAGACTTCAGACATCAGTATGATGATGGACCCTCAGGTGTGTCCACCTCCTCTGAGCAGCAACCAGTCAATGGTGAGCAGCATGGAGAAATCCCCGGGGAGCACATTTAAGCCTGGCCACTCGCGGAGCAGCAGCACTGGCTCTATAAGAAATTCAAAACAGTCCAATAACTGGGAAGGGATGAACGACTTGCACCAGGTGGACATATGTACAGGGCCTGGCTCATCTATCGACCTCAGCATCCGCGGGATCTGTGAGGGCTACCTGATGAAGAGGAGGAAGTATCCCCTCAAAGGCTGGCACAAGCGGTACTTCCTGTTAGAGAAAGGGATTCTTAAGTTCTCAAAGACACAGCAAGGATATTCAGAGAGGGAGACTCCATGGGTTCTCTTGGCCATAAGCTCTGCAGTATTTGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1431#0 GCGCTTATGAGAGACAGAGCAGAGTTCATGGGACTTTTCCCACACAAAGTCTTAACCTTG 60
consensus_1431#1 ------------------------------------------------------TTTTTG 6
***
consensus_1431#0 CAAGATTCCAAGAACAGTTTGTTTTTGTGAGCGAGTCTTTCCCTAACTCTAAAACTTGTT 120
consensus_1431#1 CAAGACTCCAAGAACAGTTTGGGGGTGTGAGTGAGTCTTTCCCTAACTCTAAAACTTGTC 66
***** *************** ****** ***************************
consensus_1431#0 TGGGGATTACCGGAGAGACTTCAGACATCAGTGATGCCAAACAGCTTAGCCTGAAGGACC 180
consensus_1431#1 TGTGGATTACCAGAGAGACTTCAGACATCAGT---------------------------- 98
** ******** ********************
consensus_1431#0 TCCTAACAACATGCACCGCTTTTCTTGTCCCAGTATGATGATGGACCCTCAGGTGTGTCC 240
consensus_1431#1 ----------------------------------ATGATGATGGACCCTCAGGTGTGTCC 124
**************************
consensus_1431#0 ACCTCCTCTGAGCAGCAACCAGTCAATGGTGAGCAGCATGGAGAAATCCCCGGGGAGCAC 300
consensus_1431#1 ACCTCCTCTGAGCAGCAACCAGTCAATGGTGAGCAGCATGGAGAAATCCCCGGGGAGCAC 184
************************************************************
consensus_1431#0 ATTTAAGCCTGGCCACTCCCGGAGCAGCAGCACTGGCTCTATAAGAAATTCAAAACAGTC 360
consensus_1431#1 ATTTAAGCCTGGCCACTCGCGGAGCAGCAGCACTGGCTCTATAAGAAATTCAAAACAGTC 244
****************** *****************************************
consensus_1431#0 CAATAACTGGGAAGTGATGAACGACTTGCACCAGGTGGACATATGTACAGGTCCTGGCTC 420
consensus_1431#1 CAATAACTGGGAAGGGATGAACGACTTGCACCAGGTGGACATATGTACAGGGCCTGGCTC 304
************** ************************************ ********
consensus_1431#0 ATCTATCGACCTCAGCATCCCCGGGATCTGTGAGGGCTACCTGATGAAGAGGAGGAAGTA 480
consensus_1431#1 ATCTATCGACCTCAGCATCCGCGGGATCTGTGAGGGCTACCTGATGAAGAGGAGGAAGTA 364
******************** ***************************************
consensus_1431#0 TCCCCTCAAAGGCTGGCACAAGCGGTACTTCCTGTTAGAGAAAGGAATTCTCAAGTACTC 540
consensus_1431#1 TCCCCTCAAAGGCTGGCACAAGCGGTACTTCCTGTTAGAGAAAGGGATTCTTAAGTTCTC 424
********************************************* ***** **** ***
consensus_1431#0 AAAGACACAGCAAG-ATATTCAGAGAGGGAAACTCCATGG-CTCTCT-GGACATAAGCTC 597
consensus_1431#1 AAAGACACAGCAAGGATATTCAGAGAGGGAGACTCCATGGGTTCTCTTGGCCATAAGCTC 484
************** *************** ********* ***** ** *********
consensus_1431#0 TGCAGTATTGTCCATAAATAAGAAAGCCAAACGCATAGATCTAGATGCAGGAGACAACCT 657
consensus_1431#1 TGCAGTATTTGTC----------------------------------------------- 497
********* *
consensus_1431#0 GTACCACCTCAAGGCAAAGACCCATGAGCTCTTTTACATATGGCTGACCAAGCTTTGTGC 717
consensus_1431#1 ------------------------------------------------------------
consensus_1431#0 TCACCGTGTGTTTAAAAAAAATGAAGCAATGAGCGTTGGCCAGGGTGTCTTTCATGCATT 777
consensus_1431#1 ------------------------------------------------------------
consensus_1431#0 GTCCTTGGCGCCAAGTTCCCTTCCAGCGATGGCCTCTCTTGCCCAGAAAAAC 829
consensus_1431#1 ----------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |