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Takifugu rubripes
cluster # 1433 cluster # 1433       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1433#0 length = 809 sequences # 2  
 consensus_1433#1 length = 428 sequences # 1  
consensusID : consensus_1433#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 809
fasta sequence 
                              [GCCGATAAAGA-GGAGTTCGAGGAGTCCGGTATCGGGGAGGAATGCTTGGGAATTCGGCTGCGTCGCGGCGGGAGAGTGGCCCACGCAGCTGGAGGTGGCTCAGATTTTAACTCTGGGACTTGCCGGCGCTACAGCACAGAGGTCAGGAAAGTGCTGGCGTTGTCACATCTAATGGAGCCAATCCACCCACCTACTCAACCCACAAGGGAATGGGATTAGTGAACAGTGCTTCCTCCCCAGAGGCTCTTCAGAAGCTGCGCCATGACAACCTTGGCATTTGTCACACGCGCTATTCCACTACAGGCATCTCTGAGCTGCAGAACTGTCAGCCATTTGTGGTGGATACACTGCATGGCAAGATAGCTGTCGCGCACAATGGGGAGCTGATTAATGCTCAGGCGCTGCGAAAACGGGTGATGCGCCACGGTGTTGGCCTTTCTACAGGTTCAGACAGCGAACTAATCACCCAACTGCTGGCCTTGACTCCACCCATGGAGGAGCAGGATACACCAGACTGGGTTGCAAGAATTAAAAATCTTATGAGCGAGACGCCCACTTCATACTCGCTGCTGGTCATGTTCAGAGACGTTATCTATGCGGTGCGCGATCCTTATGGAAATCGCCCCCTGTGCATCGGACGTATCGTTCCCGTATCTAAACTCTACAGTTCAGGGTCTGGAGAACAAGATACCGAGGGGTGGGTTGTGTCGTCGGAGTCCTGCAGCTTCCAGTCCATTGGTGCCCAATATTACAGAGAGGTGTTACCAGGAGAGATAGTCCAGCTGTCTAAGCATGGAGTCAAGTCTCTG]

[+] EMBL CA846147             [GCTGATAAAGATGGAGTTCGAGGAGTCCGGTATCGGGGAGGAATCCTTGGGTTTTCGGCTGCGTCGCGGCGGGAGAGTGGCCCACGCAGCTGGAGGTGGCTCAGATTTTAACTCTGGGACTTG TGGCGCTACAGCACAGAGGTCAGGAAAGTGCTGGCGTTGTCACATCTAATGGAGCCAATCCACCCACCTACTCAACCCACAAGGGAATGGGATTAGTGAACAGTGCTTCCTCCCCAGAGGCTCTTCAGAAGCTGCGCCATGACAACCTTGGCATTTGTCACACGCGCTATTCCACTACAGGCATCTCTGAGCTGCAGAACTGTCAGCCATTTGTGGTGGATACACTGCATGGCAAGATAGCTGTCGCGCACAATGGGGAGCTGATTAATGCTCAGGCGCTGCGAAAACGGGTGATGCGCCACGGTGTTGGCCTTTCTACAGGTTCAGACAGCGAACTAATCACCCAACTGCTGGCCTTGACTCCACCCATGGAGGAGCAGGATACACCAGACTGGGTTGCAAGAATTAAAAATCTTATGAGCGAGACGCCCACTTCATACTCGCTGCTGGTCATGTTCAGAGACGTTATCTATGCGGTGCGCGATCCTTATGGAAATCGCCCCCTGTGCATCGGACGTATCGTTCCCGTATCTAAACTCTACAGTTCAGGGTCTGGAGAACAAGATACCGAGGGGTGGGTTGTGTCGTCGGAGTCCTGCAGCTTCCAGTCCATTGGTGCCCAATATTACAGAGAGGTGTTACCAGGAGAGATAGTCCAGCTGTCTAAGCATGGAGTCAAGTCTCTG]
[+] EMBL CA846084             [  CGATAAAGA GGAGTTCGAGGAGTCCGGTATCGGGGAGGAATGCTT GGAATTCGGCTGCGTCGCGGCGGGAGAGTGGCCCACGCAGCTGGAGGTGGCTCAGATTTTAACTCTGGGACTTGCCGGCGCTACAGCACAGAGGTCAGGAAAGTGCTGGCGTTGTCACATCTAATGGAGCCAATCCACCCACCTACTCAACCCACAAGGGAATGGGATTAGTGAACAGTGCTTCCTCCCCAGAGGCTCTTCAGAAGCTGCGCCATGACAACCTTGGCATTTGTCACACGCGCTATTCCACTACAGGCATCTCTGAGCTGCAGAACTGTCAGCCATTTGTGGTGGATACACTGTTTGGCAAGATAGCTGTCGCGCACAATGGGGAGCTGATTAATGCTCAGGCGCTGCGAAAACGGGTGATGCGCCACGGTGTTGGCCTTTCTACAGGTTCAGACAGCGAACTAATCACCCAACTGCTGGCCTTGACTCCACCCATGGAGGAGCAGGATACACCAGACTGGGTTGCAAGAATTAAAAATCTTATGAGCGAGACGCCCACTTCATACTCGCTGCTGGTCATGTTCAGAGACGTTATCTATGCGGTGCGCGATCCTTATGGAAATCGCCCCCTGTGCATCGGACGTATCGTTCCCGTATCT                                                                                                                                                         ]




>consensus_1433#0
GCCGATAAAGAGGAGTTCGAGGAGTCCGGTATCGGGGAGGAATGCTTGGGAATTCGGCTG
CGTCGCGGCGGGAGAGTGGCCCACGCAGCTGGAGGTGGCTCAGATTTTAACTCTGGGACT
TGCCGGCGCTACAGCACAGAGGTCAGGAAAGTGCTGGCGTTGTCACATCTAATGGAGCCA
ATCCACCCACCTACTCAACCCACAAGGGAATGGGATTAGTGAACAGTGCTTCCTCCCCAG
AGGCTCTTCAGAAGCTGCGCCATGACAACCTTGGCATTTGTCACACGCGCTATTCCACTA
CAGGCATCTCTGAGCTGCAGAACTGTCAGCCATTTGTGGTGGATACACTGCATGGCAAGA
TAGCTGTCGCGCACAATGGGGAGCTGATTAATGCTCAGGCGCTGCGAAAACGGGTGATGC
GCCACGGTGTTGGCCTTTCTACAGGTTCAGACAGCGAACTAATCACCCAACTGCTGGCCT
TGACTCCACCCATGGAGGAGCAGGATACACCAGACTGGGTTGCAAGAATTAAAAATCTTA
TGAGCGAGACGCCCACTTCATACTCGCTGCTGGTCATGTTCAGAGACGTTATCTATGCGG
TGCGCGATCCTTATGGAAATCGCCCCCTGTGCATCGGACGTATCGTTCCCGTATCTAAAC
TCTACAGTTCAGGGTCTGGAGAACAAGATACCGAGGGGTGGGTTGTGTCGTCGGAGTCCT
GCAGCTTCCAGTCCATTGGTGCCCAATATTACAGAGAGGTGTTACCAGGAGAGATAGTCC
AGCTGTCTAAGCATGGAGTCAAGTCTCTG

consensusID : consensus_1433#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence 
                              [GGAGGCTGATAAAGATGGAGTTCGAGGAGTCCGGTATCGGGGAGGAATGCGGGGTTTTCGGCTGCGTCGCGGCGGGAGAGTGGCCCACGCAGCTGGAGGTGGCTCAGATTTTAACTCTGGGACTTGTGGCGCTACAGCACAGAGGTCAGGAAAGTGCTGGCGTTGTCACATCTAATGGAGCCAATCCACCCACCTACTCAACCCACAAGGGAATGGGATTAGTGAACAGTGCTTTCTCCCCAGAGGCTCTTCAGAAGCTGCGCCATGACAACCTTGGCATTTGTCACACGCGCTATTCCACTACAGGCATCTCTGAGCTGCAGAACTGTCAGCCATTTGTGGTGGATACACTGCATGGCAAGATAGCTGTCGCGCACAATGGGGAGCTGATTAATGCTCAGGCGCTGCGAAAACGGCACCAGTGGAGA]

[+] EMBL CA589594             [GGAGGCTGATAAAGATGGAGTTCGAGGAGTCCGGTATCGGGGAGGAATGCGGGGTTTTCGGCTGCGTCGCGGCGGGAGAGTGGCCCACGCAGCTGGAGGTGGCTCAGATTTTAACTCTGGGACTTGTGGCGCTACAGCACAGAGGTCAGGAAAGTGCTGGCGTTGTCACATCTAATGGAGCCAATCCACCCACCTACTCAACCCACAAGGGAATGGGATTAGTGAACAGTGCTTTCTCCCCAGAGGCTCTTCAGAAGCTGCGCCATGACAACCTTGGCATTTGTCACACGCGCTATTCCACTACAGGCATCTCTGAGCTGCAGAACTGTCAGCCATTTGTGGTGGATACACTGCATGGCAAGATAGCTGTCGCGCACAATGGGGAGCTGATTAATGCTCAGGCGCTGCGAAAACGGCACCAGTGGAGA]




>consensus_1433#1
GGAGGCTGATAAAGATGGAGTTCGAGGAGTCCGGTATCGGGGAGGAATGCGGGGTTTTCG
GCTGCGTCGCGGCGGGAGAGTGGCCCACGCAGCTGGAGGTGGCTCAGATTTTAACTCTGG
GACTTGTGGCGCTACAGCACAGAGGTCAGGAAAGTGCTGGCGTTGTCACATCTAATGGAG
CCAATCCACCCACCTACTCAACCCACAAGGGAATGGGATTAGTGAACAGTGCTTTCTCCC
CAGAGGCTCTTCAGAAGCTGCGCCATGACAACCTTGGCATTTGTCACACGCGCTATTCCA
CTACAGGCATCTCTGAGCTGCAGAACTGTCAGCCATTTGTGGTGGATACACTGCATGGCA
AGATAGCTGTCGCGCACAATGGGGAGCTGATTAATGCTCAGGCGCTGCGAAAACGGCACC
AGTGGAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1433#0      ----GCCGATAAAGA-GGAGTTCGAGGAGTCCGGTATCGGGGAGGAATGCTTGGGAATTC 55
consensus_1433#1      GGAGGCTGATAAAGATGGAGTTCGAGGAGTCCGGTATCGGGGAGGAATGCG-GGGTTTTC 59
                          ** ******** **********************************  ***  ***

consensus_1433#0      GGCTGCGTCGCGGCGGGAGAGTGGCCCACGCAGCTGGAGGTGGCTCAGATTTTAACTCTG 115
consensus_1433#1      GGCTGCGTCGCGGCGGGAGAGTGGCCCACGCAGCTGGAGGTGGCTCAGATTTTAACTCTG 119
                      ************************************************************

consensus_1433#0      GGACTTGCCGGCGCTACAGCACAGAGGTCAGGAAAGTGCTGGCGTTGTCACATCTAATGG 175
consensus_1433#1      GGACTTGT-GGCGCTACAGCACAGAGGTCAGGAAAGTGCTGGCGTTGTCACATCTAATGG 178
                      *******  ***************************************************

consensus_1433#0      AGCCAATCCACCCACCTACTCAACCCACAAGGGAATGGGATTAGTGAACAGTGCTTCCTC 235
consensus_1433#1      AGCCAATCCACCCACCTACTCAACCCACAAGGGAATGGGATTAGTGAACAGTGCTTTCTC 238
                      ******************************************************** ***

consensus_1433#0      CCCAGAGGCTCTTCAGAAGCTGCGCCATGACAACCTTGGCATTTGTCACACGCGCTATTC 295
consensus_1433#1      CCCAGAGGCTCTTCAGAAGCTGCGCCATGACAACCTTGGCATTTGTCACACGCGCTATTC 298
                      ************************************************************

consensus_1433#0      CACTACAGGCATCTCTGAGCTGCAGAACTGTCAGCCATTTGTGGTGGATACACTGCATGG 355
consensus_1433#1      CACTACAGGCATCTCTGAGCTGCAGAACTGTCAGCCATTTGTGGTGGATACACTGCATGG 358
                      ************************************************************

consensus_1433#0      CAAGATAGCTGTCGCGCACAATGGGGAGCTGATTAATGCTCAGGCGCTGCGAAAACGGGT 415
consensus_1433#1      CAAGATAGCTGTCGCGCACAATGGGGAGCTGATTAATGCTCAGGCGCTGCGAAAACGG-- 416
                      **********************************************************  

consensus_1433#0      GATGCGCCACGGTGTTGGCCTTTCTACAGGTTCAGACAGCGAACTAATCACCCAACTGCT 475
consensus_1433#1      ----CACCA--GTGGAGA------------------------------------------ 428
                          * ***  ***  *                                           

consensus_1433#0      GGCCTTGACTCCACCCATGGAGGAGCAGGATACACCAGACTGGGTTGCAAGAATTAAAAA 535
consensus_1433#1      ------------------------------------------------------------
                                                                                  

consensus_1433#0      TCTTATGAGCGAGACGCCCACTTCATACTCGCTGCTGGTCATGTTCAGAGACGTTATCTA 595
consensus_1433#1      ------------------------------------------------------------
                                                                                  

consensus_1433#0      TGCGGTGCGCGATCCTTATGGAAATCGCCCCCTGTGCATCGGACGTATCGTTCCCGTATC 655
consensus_1433#1      ------------------------------------------------------------
                                                                                  

consensus_1433#0      TAAACTCTACAGTTCAGGGTCTGGAGAACAAGATACCGAGGGGTGGGTTGTGTCGTCGGA 715
consensus_1433#1      ------------------------------------------------------------
                                                                                  

consensus_1433#0      GTCCTGCAGCTTCCAGTCCATTGGTGCCCAATATTACAGAGAGGTGTTACCAGGAGAGAT 775
consensus_1433#1      ------------------------------------------------------------
                                                                                  

consensus_1433#0      AGTCCAGCTGTCTAAGCATGGAGTCAAGTCTCTG 809
consensus_1433#1      ----------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)