|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1443#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence
[GCGGCAGCGGCAACTAAAAGTGGAAATTCGGTGATTTTTTGGAAAAGCAGTGAGTCAGATGAGGAGCAGCCTTTGGTTTTCATCCCTGGGGTTGCAGGAGGGACAAAGGTCCCTTTAAACTCGGGGCGAGGAGGCGCCGGTACAGCCAGTAAAAGAGGGACCAGGCCACGCAGGTCAAATGGCAAGAAGGAGACACTAAAGAGACAGGACTACTCAGAAAGTGAGAGTTCTGGGGTTCATCATCCAGATAAAATGTCAGCTGCTATATCTATTGCCCACGACGCTGGGGCAACGAAGGTATCCTCTGAGCCTAATAGAGCTAAAGGCATCGTTAGTTTGAAGGATCTCTATCCAGACGACAAACGCCGGATTGCAAACCTCATTGAAGAATTAGCAAAAGTCAGCGAGGAGAAAGAAGTGTCAGTGCAGCGCCTGAAAGACGAGCATCAAAATTTTGAGCAAAAGATCCAACAGCTGGAGGAACAGAATGTGATGATCGCACAGGAGAGAGAGAGCTTGCAGCACCAGTACAGAGAGTGTCAGGAGCTACTGGGGCTTTACCAGCAGTACCTTTCTCTGCAACAAGTGAAACTCAACC]
[+] EMBL CA333087 [GCGGCAGCGGCAACTAAAAGTGGAAATTCGGTGATTTTTTGGAAAAGCAGTGAGTCAGATGAGGAGCAGCCTTTGGTTTTCATCCCTGGGGTTGCAGGAGGGACAAAGGTCCCTTTAAACTCGGGGCGAGGAGGCGCCGGTACAGCCAGTAAAAGAGGGACCAGGCCACGCAGGTCAAATGGCAAGAAGGAGACACTAAAGAGACAGGACTACTCAGAAAGTGAGAGTTCTGGGGTTCATCATCCAGATAAAATGTCAGCTGCTATATCTATTGCCCACGACGCTGGGGCAACGAAGGTATCCTCTGAGCCTAATAGAGCTAAAGGCATCGTTAGTTTGAAGGATCTCTATCCAGACGACAAACGCCGGATTGCAAACCTCATTGAAGAATTAGCAAAAGTCAGCGAGGAGAAAGAAGTGTCAGTGCAGCGCCTGAAAGACGAGCATCAAAATTTTGAGCAAAAGATCCAACAGCTGGAGGAACAGAATGTGATGATCGCACAGGAGAGAGAGAGCTTGCAGCACCAGTACAGAGAGTGTCAGGAGCTACTGGGGCTTTACCAGCAGTACCTTTCTCTGCAACAAGTGAAACTCAACC]
consensusID : consensus_1443#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence
[TCAGTGTTTTGTCCAAACTCTATTTCATATCGACAACCTTTAAATCCTCGACATGAAAAGGTGAATGGAGGGAAAAACGTCATCTGGATGTCCAGTGTTAATGCAGATGTCCTACATCCACCTTCTGCTCAGATAGCGTGGTTAACATGGCCAGCAGTCAATTCAGAAAAAGAAAAAAAATAGCAGATGCTGAGAAACTCATCAGCTGGGAGAGAAGGATCTCTCCTCATCTAAAGATATGGCTGTGAGGAACTCTCAGCCGACTCCTGAGGCGCAGCAGTGTTCCCGCTCCAGATCGGCTCCCTCCCGTCTGCCAGCTCTTTGTCTGGCTCTTGGCCTCCCACGTCACCGCTCAGCTCCAAACATCTCGGTCGGCTCCAGATGGCTTGCAGCACCAGTACAGAGAGTGTCAGGAGCTACTGGGGCTTTACCAGCAGTACCTTTCTCTGCAACAAGTGAAACTCAGCCAGTCCATTGCACATCTGAGCCAGGACCCAGCTGTCAGCAAGGTCCTGAGTAGAGAGGAAGCCATCAGCTCAACGTCTTCACACAGATCCAGCGGCTCGCCCCCCGATGGCTCCGACCATGGCTTC]
[+] EMBL BU807609 [TCAGTGTTTTGTCCAAACTCTATTTCATATCGACAACCTTTAAATCCTCGACATGAAAAGGTGAATGGAGGGAAAAACGTCATCTGGATGTCCAGTGTTAATGCAGATGTCCTACATCCACCTTCTGCTCAGATAGCGTGGTTAACATGGCCAGCAGTCAATTCAGAAAAAGAAAAAAAATAGCAGATGCTGAGAAACTCATCAGCTGGGAGAGAAGGATCTCTCCTCATCTAAAGATATGGCTGTGAGGAACTCTCAGCCGACTCCTGAGGCGCAGCAGTGTTCCCGCTCCAGATCGGCTCCCTCCCGTCTGCCAGCTCTTTGTCTGGCTCTTGGCCTCCCACGTCACCGCTCAGCTCCAAACATCTCGGTCGGCTCCAGATGGCTTGCAGCACCAGTACAGAGAGTGTCAGGAGCTACTGGGGCTTTACCAGCAGTACCTTTCTCTGCAACAAGTGAAACTCAGCCAGTCCATTGCACATCTGAGCCAGGACCCAGCTGTCAGCAAGGTCCTGAGTAGAGAGGAAGCCATCAGCTCAACGTCTTCACACAGATCCAGCGGCTCGCCCCCCGATGGCTCCGACCATGGCTTC]
consensusID : consensus_1443#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence
[GTGGTATCATCAAGATGTATGAGACTTTTTTTTTTTTTTAATTTGGGTGATTCTGCAGTTGAATATAGTGGTTTAAGAAAGAGAACGTTTTTTATTATTGGATGGAAAGGCTTTTGGAAGCTCTTTAAAATCATTTTAATCTTTAGCGTTCATTTTGCCCCAGGTACCGTTCTTCTTACACGCCAGCAGGGGGCACTATTGCCCCTAAAAAGACGTGGGAATTTAGACTAAGAGTCTAGAATTTTATTAAAAACCTAATAGAACATTGAGTGTATGTATTTAAATGTATTGATGCCGGCTTGTGGTAGTTAAACCTCATCAGTGTTTTGTCCAAACTCTATTTCATATCGACAACCTTTAAATCCTCCACATGAAAAGGTG]
[+] EMBL CA333102 [GTGGTATCATCAAGATGTATGAGACTTTTTTTTTTTTTTAATTTGGGTGATTCTGCAGTTGAATATAGTGGTTTAAGAAAGAGAACGTTTTTTATTATTGGATGGAAAGGCTTTTGGAAGCTCTTTAAAATCATTTTAATCTTTAGCGTTCATTTTGCCCCAGGTACCGTTCTTCTTACACGCCAGCAGGGGGCACTATTGCCCCTAAAAAGACGTGGGAATTTAGACTAAGAGTCTAGAATTTTATTAAAAACCTAATAGAACATTGAGTGTATGTATTTAAATGTATTGATGCCGGCTTGTGGTAGTTAAACCTCATCAGTGTTTTGTCCAAACTCTATTTCATATCGACAACCTTTAAATCCTCCACATGAAAAGGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1443#1 TCAGTGTTTTGTCCAAACTCTATTTCATATCGACAACCTTTAAATCCTCGACATGAAAAG 60
consensus_1443#2 ------------------------------------------------------------
consensus_1443#0 ----------GCGGCAGCGGCAACTAAAAGTGGAAATTCGGTGATTTTTTGGA-AAAGCA 49
consensus_1443#1 GTGAATGGAGGGAAAAACGTCATCTGGATGTC--CAGTGTTAATGCAG-ATGTCCTACAT 117
consensus_1443#2 ------------------------------------------------------------
consensus_1443#0 GTGAGTCAGATGAGGAGCAGCCTTTGGTTTTCATCCCTGGGGTTGCAGGAGGGACAAAGG 109
consensus_1443#1 CCACCTTCTGCTCAGATAGCGTGGTTAACATGGCCAGCAGTCAATTCAGAAAAAGAAAAA 177
consensus_1443#2 ---------------GTGGTATCATCAAGATGTATGAGACTTTTTTTTTTTTTTAATTTG 45
consensus_1443#0 TCCCTTTAAACTCGGGGCGAGGAGGCGCCGGTACAGCCAGTAAAAGAGGGACCAGGCCAC 169
* * *
consensus_1443#1 AAATAGCAGATGCTGAGAAACTCATCAGCTGGGAGAGAAGGA--TCTCTCCTCATCTAAA 235
consensus_1443#2 GGTGATTC--TGCAGTTGAATATAGTGGTTTAAGAAAGAGAACGTTTTTTATTATTGGAT 103
consensus_1443#0 GCAGGTCAAATGGCAAGAAGGAGAC--ACTAAAGAGACAGGA-----CTACTCAGAAAGT 222
** * * * ** * * * *
consensus_1443#1 GATATGGCTGTGAGGAACTCTCAGCCGAC-TCCTGAGGCGCAGCAGTGTTCCCGCTCCAG 294
consensus_1443#2 GGAAAGGCTTTTGGAAGCTCTTTAAAATCATTTTAATCTTTAGCGTTCATTTTGCCCCAG 163
consensus_1443#0 GAGAGTTCTGGGGTTCATCATCCAGATAAAATGTCAGCTGCTATATCTATTGCCCACGAC 282
* * ** * * * * * * *
consensus_1443#1 ATCGGCTCCCTCCCGTCTGCCAGCTCTTTGTCTGGCTCTTGGCCTCCCACGTCACCGCTC 354
consensus_1443#2 GTACCGTTCTTCTTACACGCCAGC-----AGGGGGCACTATTGCCCCTAAAAAGACGTGG 218
consensus_1443#0 GCTGGGGCAACGAAGGTATCCTCTGAGCCTAATAGAGCTAAAGGCATCGTTAGTTTGAAG 342
** * ** *
consensus_1443#1 AGCTCCAAACATCTCGGTCGGCTCCAGATGGCTTGCAGCACCAGTACAGAGAGTGTCAGG 414
consensus_1443#2 GAATTTAGAC----TAAGAGTCTAGAATTTTATTAAAAACCTAATA----GAACATTGAG 270
consensus_1443#0 GATCTCTATC----CAGACGACAAACGCCGGATTGCAAACCTCATTGAAGAATTAGCAAA 398
* * * ** * * * *
consensus_1443#1 AGCTACTGGGGCTTTACCAGCAGTACCTTTCTCTGCAACAAGTGAAACTCAGCCAGTCCA 474
consensus_1443#2 TG----TATGTATTTAAATGTATTGATGCCGGCTTGTGGTAGTTAAACCTCATCAGTGTT 326
consensus_1443#0 AGTCAGCGAGGAGAAAGAAGTGTCAGTGCAGCGCCTGAAAGACGAGCATCAA--AATTTT 456
* * * * * * *
consensus_1443#1 TTGCACAT-CTGAGCCAG--GACCCAGCTGTCAGCAA--GGTCCTGAGTAGAGAGGAAGC 529
consensus_1443#2 TTGTCCAAACTCTATTTC--ATATCGACAACCTTTAA--ATCCTCCACATGAAAAGGTG- 381
consensus_1443#0 GAGCAAAAGATCCAACAGCTGGAGGAACAGAATGTGATGATCGCACAGGAGAGAGAGAGC 516
* * * * * * ** * *
consensus_1443#1 ------CATCAGCTCAACGTCTTCACACAGATCCAGCGGCTCGCCCCCCGATGGCTCCGA 583
consensus_1443#2 ------------------------------------------------------------
consensus_1443#0 TTGCAGCACCAGTACAGAGAGTGTCAGGAGCTACTGGGGCTTTACCAGCAGTACCTTTCT 576
consensus_1443#1 CCATGGCTTC------------ 593
consensus_1443#2 ----------------------
consensus_1443#0 CTGCAACAAGTGAAACTCAACC 598
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |