These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 615 fasta sequence [TCCGCAACAATGAGTGAATCACTGGTGGTTTGTGAGGTGGATGAAGACCTGGTTAAAAAGCTGAAGGAGTTCCGTTTCCGGAAGGAGACCAACAACGCAGCCATCATAATGAAGATTGATAAAGACAAGCAGCTGGTGATTCTGGAAGAAGAGCACGAGGACATTTCTCCTGACGATCTAAAGGATGAGCTTCCTGAGAGACAGCCCAGGTTCATCGTCTACAGTTACAAGTACCAGCACGATGACGGACGCGTCTCCTACCCACTCTGCTTCATCTTCTCCAGTCCAGTGGGCTGCAGACCGGAGCAGCAGATGATGTACGCAGGGAGCAAAAATAAACTGGGACACACCGTCCAGCTGTCCAAGGGGTTTGAGATCAGAAACACAGAGGACCTGACAGAGGAGTGGCTCAGAGAGAAACTGGGCTTCTTCGGCTAAATGCCGTCTCCTGAGGAGGATCCCCTTCACACGGGTTGGGAGAAGAAGATAAAAACCCAGAAAGATTTAGCATTTTCCTCTTTGTGTCAGACCTGATTTAAATGGTTGTTGTGACTGATTCTCTGCTGGGCTGTGGGCTCCTCTTAACAGGGGTGGTGGGATATGCAGCTCTGGTGC] [+] EMBL CA588947 [TCCGCAACAATGAGTGAATCACTGGTGGTTTGTGAGGTGGATGAAGACCTGGTTAAAAAGCTGAAGGAGTTCCGTTTCCGGAAGGAGACCAACAACGCAGCCATCATAATGAAGATTGATAAAGACAAGCAGCTGGTGATTCTGGAAGAAGAGCACGAGGACATTTCTCCTGACGATCTAAAGGATGAGCTTCCTGAGAGACAGCCCAGGTTCATCGTCTACAGTTACAAGTACCAGCACGATGACGGACGCGTCTCCTACCCACTCTGCTTCATCTTCTCCAGTCCAGTGGGCTGCAGACCGGAGCAGCAGATGATGTACGCAGGGAGCAAAAATAAACTGGTACACACCGTCCAGCTGTCCAAGGTGTTTGAGATCAGAAACACAGAGGACCTGACAGAGGAGTGGCTCAGAGAGAAACTGGGCTTCTTCGGCTAAATGCCGTCTCCTGAGGAGGATCCCCTTCACACGGGTTGGGAGAAGAAGATAAAAACCCAGAAAGATTTAGCATTTTCCTCTTTGTGTCAGACCTGATTTAAATGGTTGTTGTGACTGATTCTCTGCTGGGCTGTGGGCTCCTCTTAACAGGGGTGGTGGGATATGCAGCTCTGGTGC] [+] EMBL FR0058944 [ TTGTGAGGTGGATGAAGACCTGGTTAAAAAGCTGAAGGAGTTCCGTTTCCGGAAGGAGACCAACAACGCAGCCATCATAATGAAGATTGATAAAGACAAGCAGCTGGTGATTCTGGAAGAAGAGCACGAGGACATTTCTCCTGACGATCTAAAGGATGAGCTTCCTGAGAGACAGCCCAGGTTCATCGTCTACAGTTACAAGTACCAGCACGATGACGGACGCGTCTCCTACCCACTCTGCTTCATCTTCTCCAGTCCAGTGGGCTGCAGACCGGAGCAGCAGATGATGTACGCAGGGAGCAAAAATAAACTGGGACACACCGTCCAGCTGTCCAAGGGGTTTGAGATCAGAAAC ] consensusID : consensus_1444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [AGATGAGTGAATCACTCGGTGGTGTTGTGAGGTTGGATGTAAGACTCTGGTGTAGAAAAGCTTGAAGAGAGTTCCTGTTTGCCGGAAGGAGGACCAACTAACGCAGCTCATCATGAAATGAAGAGTTGATAATAGACAAGGCAGCCTGGGTGATTCTTGGAAGTAAGAGCACGGAGGACAGTTTCTTCCTGACGACTCTAAAGGATGGAGCTTCCGTGAGAGACGAGCCCAGGTTCATCTGTCTACAGTTACAATGTACCAGCACGATGNACGGACGCGTCTCCTACCCACTCTGCTTCATCTTCTCCAGCCCAGTGGGCTGCAGACCGGAGCAGTAGATGATGTACGCAGGGAGCAAAAATAAACTGGGACACACCGTCCAGCTGTCCAAGGTGTTTGAGATCAGAAAC] [+] EMBL FR0058825 [AGATGAGTGAATCACTCGGTGGTGTTGTGAGGTTGGATGTAAGACTCTGGTGTAGAAAAGCTTGAAGAGAGTTCCTGTTTGCCGGAAGGAGGACCAACTAACGCAGCTCATCATGAAATGAAGAGTTGATAATAGACAAGGCAGCCTGGGTGATTCTTGGAAGTAAGAGCACGGAGGACAGTTTCTTCCTGACGACTCTAAAGGATGGAGCTTCCGTGAGAGACGAGCCCAGGTTCATCTGTCTACAGTTACAATGTACCAGCACGATGNACGGACGCGTCTCCTACCCACTCTGCTTCATCTTCTCCAGCCCAGTGGGCTGCAGACCGGAGCAGTAGATGATGTACGCAGGGAGCAAAAATAAACTGGGACACACCGTCCAGCTGTCCAAGGTGTTTGAGATCAGAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1444#0 TCCGCAACAATGAGTGAATCACT-GGTGGT-TTGTGAGGT-GGATG-AAGAC-CTGGTT- 54 consensus_1444#1 -------AGATGAGTGAATCACTCGGTGGTGTTGTGAGGTTGGATGTAAGACTCTGGTGT 53 ************** ****** ********* ***** ***** ***** consensus_1444#0 -AAAAAGCTGAAGGAG---TTCCGTTT-CCGGAAGGAG-ACCAAC-AACGCAGC-CATCA 106 consensus_1444#1 AGAAAAGCTTGAAGAGAGTTCCTGTTTGCCGGAAGGAGGACCAACTAACGCAGCTCATCA 113 ******* * *** * * **** ********** ****** ******** ***** consensus_1444#0 T--AATGAAGA-TTGATAA-AGACAAG-CAGCT--GGTGATTCT-GGAAG-AAGAGCACG 157 consensus_1444#1 TGAAATGAAGAGTTGATAATAGACAAGGCAGCCTGGGTGATTCTTGGAAGTAAGAGCACG 173 * ******** ******* ******* **** ********* ***** ********* consensus_1444#0 -AGGACA--TTTCTCCTGACGA-TCTAAAGGATG-AGCTTCC-TGAGAGAC-AGCCCAGG 210 consensus_1444#1 GAGGACAGTTTCTTCCTGACGACTCTAAAGGATGGAGCTTCCGTGAGAGACGAGCCCAGG 233 ****** ** ********* *********** ******* ******** ******** consensus_1444#0 TTCATC-GTCTACAGTTACAA-GTACCAGCACGATGA-CGGACGCGTCTCCTACCCACTC 267 consensus_1444#1 TTCATCTGTCTACAGTTACAATGTACCAGCACGATGNACGGACGCGTCTCCTACCCACTC 293 ****** ************** ************** ********************** consensus_1444#0 TGCTTCATCTTCTCCAGTCCAGTGGGCTGCAGACCGGAGCAGCAGATGATGTACGCAGGG 327 consensus_1444#1 TGCTTCATCTTCTCCAGCCCAGTGGGCTGCAGACCGGAGCAGTAGATGATGTACGCAGGG 353 ***************** ************************ ***************** consensus_1444#0 AGCAAAAATAAACTGGGACACACCGTCCAGCTGTCCAAGGGGTTTGAGATCAGAAACACA 387 consensus_1444#1 AGCAAAAATAAACTGGGACACACCGTCCAGCTGTCCAAGGTGTTTGAGATCAGAAAC--- 410 **************************************** **************** consensus_1444#0 GAGGACCTGACAGAGGAGTGGCTCAGAGAGAAACTGGGCTTCTTCGGCTAAATGCCGTCT 447 consensus_1444#1 ------------------------------------------------------------ consensus_1444#0 CCTGAGGAGGATCCCCTTCACACGGGTTGGGAGAAGAAGATAAAAACCCAGAAAGATTTA 507 consensus_1444#1 ------------------------------------------------------------ consensus_1444#0 GCATTTTCCTCTTTGTGTCAGACCTGATTTAAATGGTTGTTGTGACTGATTCTCTGCTGG 567 consensus_1444#1 ------------------------------------------------------------ consensus_1444#0 GCTGTGGGCTCCTCTTAACAGGGGTGGTGGGATATGCAGCTCTGGTGC 615 consensus_1444#1 ------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |