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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1449#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence
[CCTGTCATATGTAAAATTAATATTATAGAATGTTTTATTTTTGTACTCTTGTGCATTTATATATTAAAACTAATCATTTAAAGGATGCTGTACTCTCATAATCAATCATCTAGCTAACATTTGAACATGTATACAGTTGGGCAGTAAAAAATGGACTAATATTACCATTTAAATGTATTTTTTTCTATTCATATGAGAGGGTTTCCAGCATAAAGGCCTTAGGATGCATACGGTCAATGGAAGGTGTGCTGTGATGTAGCTACCGTCACCTCAAGGGCCCGTGTTTGGATTTCATAAGTTCCACCATGGCTGAAACTCTTGTAAATCCATCATCAGACACAGTCATTATTATCCACAGGAGATTGTTCACAGATTAAACTGTCATGACTAACAAAAGGAGCGAAAAGGGGAAGGCAAA]
[+] EMBL FR0055659 [CCTGTCATATGTAAAATTAATATTATAGAATGTTTTATTTTTGTACTCTTGTGCATTTATATATTAAAACTAATCATTTAAAGGATGCTGTACTCTCATAATCAATCATCTAGCTAACATTTGAACATGTATACAGTTGGGCAGTAAAAAATGGACTAATATTACCATTTAAATGTATTTTTTTCTATTCATATGAGAGGGTTTCCAGCATAAAGGCCTTAGGATGCATACGGTCAATGGAAGGTGTGCTGTGATGTAGCTACCGTCACCTCAAGGGCCCGTGTTTGGATTTCATAAGTTCCACCATGGCTGAAACTCTTGTAAATCCATCATCAGACACAGTCATTATTATCCACAGGAGATTGTTCACAGATTAAACTGTCATGACTAACAAAAGGAGCGAAAAGGGGAAGGCAAA]
consensusID : consensus_1449#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence
[AAACACAAACATCCATTGTCAAAAAAGGATGTTAGGCAGCTGTCGTCACATCAGTAGCTTCAACACTAACTATAGCAGCGTAGTAGTGAATGTTATAGATGCTAAACCGTAACACTAACAATGACCAAGTACCTACAAGCATCACTCAGAGAGAGAAGTGCACTTTATATCTGGTGTATTCATGTTTTAACAACAAAAGTAAGCATTACTCAAAGTGTGAATTCTGTCTCTTTTCTTGTTGTATGTTAATCCTGAAGTTCTGGATCCCTGAATGTGTAACTGCATTTACTTGTTAGATTGTTATCCACCTCTTCATTTCAACCCTCTTGTCATATGTAAAATTAATATTATAAAATGTTTTATTTTTGTACTCTTGTGCATTTATATATTAAAACTAAACAT]
[+] EMBL CA845191 [AAACACAAACATCCATTGTCAAAAAAGGATGTTAGGCAGCTGTCGTCACATCAGTAGCTTCAACACTAACTATAGCAGCGTAGTAGTGAATGTTATAGATGCTAAACCGTAACACTAACAATGACCAAGTACCTACAAGCATCACTCAGAGAGAGAAGTGCACTTTATATCTGGTGTATTCATGTTTTAACAACAAAAGTAAGCATTACTCAAAGTGTGAATTCTGTCTCTTTTCTTGTTGTATGTTAATCCTGAAGTTCTGGATCCCTGAATGTGTAACTGCATTTACTTGTTAGATTGTTATCCACCTCTTCATTTCAACCCTCTTGTCATATGTAAAATTAATATTATAAAATGTTTTATTTTTGTACTCTTGTGCATTTATATATTAAAACTAAACAT]
consensusID : consensus_1449#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence
[TCTATTCATATGAGAGGGTTTCCAGCATAAAGGCCTTAGGATGCATACGGTCAATGGAAGGTGTGCTGTGATGTAGCTACCGTCACCTCAAGGGCCCGTGTTTGGATTTCATAAGTTCCACCATGGCTGAAACTCTTGTAAATCCATCATCAAACACAGTCATTATTATCCACAGGAGATTGTTCACAGATTAAACTGTCATGAATACAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCGGGTACCAACTTTTGGCC]
[+] EMBL FR0056046 [TCTATTCATATGAGAGGGTTTCCAGCATAAAGGCCTTAGGATGCATACGGTCAATGGAAGGTGTGCTGTGATGTAGCTACCGTCACCTCAAGGGCCCGTGTTTGGATTTCATAAGTTCCACCATGGCTGAAACTCTTGTAAATCCATCATCAAACACAGTCATTATTATCCACAGGAGATTGTTCACAGATTAAACTGTCATGAATACAAAAAAAAAAAAAAAAACCCCGGGGGGGGCCCGGGTACCAACTTTTGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1449#0 CCTGTCATATGTAAAATTAATATTATAGAATGTTTTATTTTTGTACTCTTGTGCATTTAT 60
consensus_1449#2 ------------------------------------------------------------
consensus_1449#1 --------------AAACACAAACATCCATTGTCAAAAAAGGATGTTAGGCAGCTGTCGT 46
consensus_1449#0 ATATTAAAACTAATCATTTAAAGGATGCTGTACTCTCATAATCAATCATCTAGCTAACAT 120
consensus_1449#2 ------------------------------------------------------------
consensus_1449#1 -CACATCAGTAGCTTCAACACTAACTATAGCAGCGTAGTAGTGAATGTTATAGATGCTAA 105
consensus_1449#0 TTGAACATGTATACAGTTGGGCAGTAAAAAATGGACTAATATTACCATTTAAATGTATTT 180
consensus_1449#2 ------------------------------------------------------------
consensus_1449#1 ACCGTAACACTAACAATGACCAAGTACCTACAAGCATCACTCAGAGAGAGAAGTGCACTT 165
consensus_1449#0 TTTTCTATTCATATGAGAGGGTTTCCAGCATAA--AGGCCTTAGGATGCATACGGTCAAT 238
consensus_1449#2 ---TCTATTCATATGAGAGGGTTTCCAGCATAA--AGGCCTTAGGATGCATACGGTCAAT 55
consensus_1449#1 TATATCTGGTGTATTCATGTTTTAACAACAAAAGTAAGCATTACTCAAAGTGTGAATTCT 225
*** * ** ** ** ** * ** *** * * *
consensus_1449#0 GGAAGGTGTGCTGTGATGTAGCTACCGTCACCTCAAGGGCCCGTGTTTG---GATTTCAT 295
consensus_1449#2 GGAAGGTGTGCTGTGATGTAGCTACCGTCACCTCAAGGGCCCGTGTTTG---GATTTCAT 112
consensus_1449#1 GTCTCTTTTCTTGTTGTATGTTAATCCTGAAGTTCTGGATCCCTGAATGTGTAACTGCAT 285
* * * *** * * * * * * * ** ** ** ** * * ***
consensus_1449#0 A-AGTTCCACCATGGCTGAAACTCTTGTAAATCCA--TCATCAGACACAGTCATTATTAT 352
consensus_1449#2 A-AGTTCCACCATGGCTGAAACTCTTGTAAATCCA--TCATCAAACACAGTCATTATTAT 169
consensus_1449#1 TTACTTGTTAGATTGTTATCCACCTCTTCATTTCAACCCTCTTGTCATATGTAAAATTAA 345
* ** ** * * ** * * * ** * ** * * ****
consensus_1449#0 CCACAGGAGATTGTTCACAGATTAAACTGTCATG-ACTAACAAAAGGAGCGAAAA----- 406
consensus_1449#2 CCACAGGAGATTGTTCACAGATTAAACTGTCATG-AATACAAAAAAAAAAAAAAAAACCC 228
consensus_1449#1 TATTATAAAATGTTTTATTT-TTGTACTCTTGTGCATTTATATATTAAAACTAAACAT-- 402
* * ** ** * ** *** * ** * * * * * ***
consensus_1449#0 -GGGGAAGGCAAA----------------- 418
consensus_1449#2 CGGGGGGGGCCCGGGTACCAACTTTTGGCC 258
consensus_1449#1 ------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |