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Takifugu rubripes
cluster # 1465 cluster # 1465       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1465#0 length = 414 sequences # 2  
 consensus_1465#1 length = 353 sequences # 1  
consensusID : consensus_1465#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 414
fasta sequence 
                              [GCTCCTGTTGCTCCTGCAGGTTTCCCTGCTCATCACTCGCACCAGTGCCATTGCTCTGCAGAAAGATGGACGTCAGCTGTCAGACGATCTGGGGGAAATTAAAAGACCATCACAGAAGCCGGCTTGTTCTTCAAATTGTCTGTGCTGGTGTCCTGAAGGTCCTGGAACATATGGGCTTTTAAGGGAAGAGCCCGATAAGCCCGACCCATTATCCAAACTCTTGGCCAGGCAAAACACATTAACCTGATGGAAATTACCAGTTTTCCAGCTTCTGCAGAACAGCCATCCTACACGTATCACTCAGCGTCTATATGCTGTCTTTTTCACTTATGAAGCTTTTAAGAGTCACTTCACATGCAAAATAAAAGTTTGTATTTCACAAAGGGGTAAAAAAAAACCTCGGGGGGGGCCCGG]

[+] EMBL CA845239             [GCTCCTGTTGCTCCTGCAGGTTTCCCTGCTCATCACTCGCACCAGTGCCATTGCTCTGCAGAAAGATGGACGTCAGCTGTCAGACGATCTGGGGGAAATTAAAAGACCATCACAGAAGCCGGCTTGTTCTTCAAATTGTCTGTGCTGGTGTCCTGAAGGTCCTGGAACATATGGGCTTTTAAGGGAAAAGCCCGATAAGCCCGACCCATTATCCAAACTCTTGGCCAAGCAAAACACATTAACCTGATGGAAATTACCAGTTTTCCAGCTTCTGCAGAACAGCCATCCTACACGTATCACTCAGCGTCTATATGCTGTCTTTTTCACTTATGAAGCTTTTAAGAGTCACTTCACATGCAAAATAAAAGTTTGTATT                                      ]
[+] EMBL FR0055295            [        TGCTCCTGCAGGTTTCCCTGCTCATCACTCGCACCAGTGCCATTGCTCTGCAGAAAGATGGACGTCAGCTGTCAGACGATCTGGGGAAAATTAAAAGACCATCACAGAAGCCGGCTTGTTCTTCAAATTGTCTGTGCTGGTGTCCTGAAGGTCCTGGATCATATGGGCTTTT      AGAGCCCGATAAGCCCGACCCATTATCCAAACTCTTGGCCAGGCATTACACATTAACCTGATGGAAATTACCAGTTTTCCAGCTTCTGCAGAACAGCCATCCTACATGTATCACTCAGCGTCTATATGCTGTCTTTTTCACTTATGAAGCTTTTAAGAGTCACTTCACATGCAAAATAAAAGTTTGTATTTCACAAAGGGGTAAAAAAAAACCTCGGGGGGGGCCCGG]




>consensus_1465#0
GCTCCTGTTGCTCCTGCAGGTTTCCCTGCTCATCACTCGCACCAGTGCCATTGCTCTGCA
GAAAGATGGACGTCAGCTGTCAGACGATCTGGGGGAAATTAAAAGACCATCACAGAAGCC
GGCTTGTTCTTCAAATTGTCTGTGCTGGTGTCCTGAAGGTCCTGGAACATATGGGCTTTT
AAGGGAAGAGCCCGATAAGCCCGACCCATTATCCAAACTCTTGGCCAGGCAAAACACATT
AACCTGATGGAAATTACCAGTTTTCCAGCTTCTGCAGAACAGCCATCCTACACGTATCAC
TCAGCGTCTATATGCTGTCTTTTTCACTTATGAAGCTTTTAAGAGTCACTTCACATGCAA
AATAAAAGTTTGTATTTCACAAAGGGGTAAAAAAAAACCTCGGGGGGGGCCCGG

consensusID : consensus_1465#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence 
                              [CTCGCACCAGTGCCATTGCTCTGCAGAAAGATGGACGTCAGCTGTCAGACGATCTGGGGAAAACTAAAAGACCATCACAGAAGCCGGTTTGTTCTTCAAATTGTCTGTGCTGGTGTCCTGAAGGTCCTGGAGGAAATGGGCCTTTTGTGGTAAAGCCCAATGAGCCCGACCCATCACCCGAACTCTTGGCCAAGCAAAACACATTAACCTGATGGAAATTGCCAGTTTTCCAGCTTCTGCAGAACACGTATCACTCAGCGTCTATATGCTGTCTTTTTCACTTATGAAGCTTTTAAGAGTCACTTCACATGCAAAATAAAAGTTTGTATTTCACAAGACAGAGGAAGAAAACC]

[+] EMBL FR0056362            [CTCGCACCAGTGCCATTGCTCTGCAGAAAGATGGACGTCAGCTGTCAGACGATCTGGGGAAAACTAAAAGACCATCACAGAAGCCGGTTTGTTCTTCAAATTGTCTGTGCTGGTGTCCTGAAGGTCCTGGAGGAAATGGGCCTTTTGTGGTAAAGCCCAATGAGCCCGACCCATCACCCGAACTCTTGGCCAAGCAAAACACATTAACCTGATGGAAATTGCCAGTTTTCCAGCTTCTGCAGAACACGTATCACTCAGCGTCTATATGCTGTCTTTTTCACTTATGAAGCTTTTAAGAGTCACTTCACATGCAAAATAAAAGTTTGTATTTCACAAGACAGAGGAAGAAAACC]




>consensus_1465#1
CTCGCACCAGTGCCATTGCTCTGCAGAAAGATGGACGTCAGCTGTCAGACGATCTGGGGA
AAACTAAAAGACCATCACAGAAGCCGGTTTGTTCTTCAAATTGTCTGTGCTGGTGTCCTG
AAGGTCCTGGAGGAAATGGGCCTTTTGTGGTAAAGCCCAATGAGCCCGACCCATCACCCG
AACTCTTGGCCAAGCAAAACACATTAACCTGATGGAAATTGCCAGTTTTCCAGCTTCTGC
AGAACACGTATCACTCAGCGTCTATATGCTGTCTTTTTCACTTATGAAGCTTTTAAGAGT
CACTTCACATGCAAAATAAAAGTTTGTATTTCACAAGACAGAGGAAGAAAACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1465#0      GCTCCTGTTGCTCCTGCAGGTTTCCCTGCTCATCACTCGCACCAGTGCCATTGCTCTGCA 60
consensus_1465#1      -----------------------------------CTCGCACCAGTGCCATTGCTCTGCA 25
                                                         *************************

consensus_1465#0      GAAAGATGGACGTCAGCTGTCAGACGATCTGGGGGAAATTAAAAGACCATCACAGAAGCC 120
consensus_1465#1      GAAAGATGGACGTCAGCTGTCAGACGATCTGGGGAAAACTAAAAGACCATCACAGAAGCC 85
                      ********************************** *** *********************

consensus_1465#0      GGCTTGTTCTTCAAATTGTCTGTGCTGGTGTCCTGAAGGTCCTGGAACATATGGGCTTTT 180
consensus_1465#1      GGTTTGTTCTTCAAATTGTCTGTGCTGGTGTCCTGAAGGTCCTGGAGGAAATGGGCCTTT 145
                      ** *******************************************  * ****** ***

consensus_1465#0      AAGGGAAGAGCCCGATAAGCCCGACCCATTATCCAAACTCTTGGCCAGGCAAAACACATT 240
consensus_1465#1      TGTGGTAAAGCCCAATGAGCCCGACCCATCACCCGAACTCTTGGCCAAGCAAAACACATT 205
                         ** * ***** ** ************ * ** ************ ************

consensus_1465#0      AACCTGATGGAAATTACCAGTTTTCCAGCTTCTGCAGAACAGCCATCCTACACGTATCAC 300
consensus_1465#1      AACCTGATGGAAATTGCCAGTTTTCCAGCTTCTGCAGAACA-----------CGTATCAC 254
                      *************** *************************           ********

consensus_1465#0      TCAGCGTCTATATGCTGTCTTTTTCACTTATGAAGCTTTTAAGAGTCACTTCACATGCAA 360
consensus_1465#1      TCAGCGTCTATATGCTGTCTTTTTCACTTATGAAGCTTTTAAGAGTCACTTCACATGCAA 314
                      ************************************************************

consensus_1465#0      AATAAAAGTTTGTATTTCACAAAGGGGTAAAAAAAAACCTCGGGGGGGGCCCGG 414
consensus_1465#1      AATAAAAGTTTGTATTTCACAAGACAGAGGAAGAAAACC--------------- 353
                      **********************    *   ** ******


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)