These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1467#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence [CTGCGCAATCAGATCCACGTTAAGTCTCCCCCGAGAGAAGGCAGCCAGGGTGAACTTGCACCTGCCAACAGCCAAACTCGGATGAGCACCAACATGTGAGGAAGATGCCGTCACCAGAGTCTGCATGCTGACCCTGCTGACAGCATCACCAGCCCGGAGGGTTGCCTCCAACACTCAACCCTTATCCTCGCACCTTTTGTCTCTCTGCAGCAGACGGAAGGGACAAAACTTCAATGACTTTACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAGATGTTTTGTTTTGTCTGACCTGGAGAATTGAGAATGTGTTTTGATGAACTCAGCACTTCAGTTGTATGTTTAGTGGTAGGAGATGCACTTTGCTCTGCTTACACTTGTTAACTGCAACAAGGTTTTAAAATAAAAAAATTACAAACATGTATGTTTTCACTGTTTTTCACTGTGGGAGATGAAGCCTGTCACCTAAAACTTTTATTTTATTCTGTTTTTTGTTTTTTTTTGCAAGTGATCAAGGTAAAGGTGTATTTGTATGGTTTAAACATAATTTCTACAGCCGAAATAAACTGCTTAAC] [-] EMBL CA332994 [CTGCGCAATCAGATCCACGTTAAGTCTCCCCCGAGAGAAGGCAGCCAGGGTGAACTTGCACCTGCCAACAGCCAAACTCGGATGAGCACCAACATGTGAGGAAGATGCCGTCACCAGAGTCTGCATGCTGACCCTGCTGACAGCATCACCAGCCCGGAGGGTTGCCTCCAACACTCAACCCTTATCCTCCCACCTTTTGTCTCTCTGCAGCAGACGGAAGGGACAAAACTTCAATGACTTTACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAAATGTTTTGTTTTGTCTGACCTGGAGAATTGAAAATGTGTTTTGATGAACTCAGCACTTCAGTTGTATGTTTAGTGGTAGGAGATGCACTTTGCTCTGCTTACACTTGTTAACTGCAACAAGGTTTTAAAATAAAAAAATTACAAACATGTATGTTTTCACTGTTTTTCACTGTGGGAGATGAAGCCTGTCACCTAAAACTTTTATTTTATTCTGTTTTTTGTTTTTTTTTGCAAGTGATCAAGGTAAAGGTGTATTTGTATGGTTTAAACATAATTTCTACAGCCGAAATAAACTGCTTAAC] [+] EMBL FR0057730 [ CATGTGAGGAAGATGCCGTCACCAGAGTCTGCATGCTGACCCTGCTGACAGCATCACCAGCCCGGAGGGTTGCCTCCAACACTCAACCCTTATCCTCGCACCTTTTGTCTCTCTGCAGCAGACGGAAGGGACAAAACTTCAATGACTTTACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAGATGTTTTGTTTTGTCTGACCTGGAGAATTGAGAATGTGTTTTGATGAACTCAGCACTTCAGTTGTATGTTTAG ] consensusID : consensus_1467#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence [CTCTCTGCAGCAGACGGGACGGACAGAACTTCAGTGACTTTACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAAATGTTTTGTTTTGTCGTGACCTGGAGAATTGAGAATGTGTTGTGATGGGCTCAGCGCTTCAGTTGGATGTGTAGTGGTAGGAGATGCACTTTGCTCTGCTGACACGTGGGTAGCTGCAGGAGTGGTT] [+] EMBL FR0056650 [CTCTCTGCAGCAGACGGGACGGACAGAACTTCAGTGACTTTACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAAATGTTTTGTTTTGTCGTGACCTGGAGAATTGAGAATGTGTTGTGATGGGCTCAGCGCTTCAGTTGGATGTGTAGTGGTAGGAGATGCACTTTGCTCTGCTGACACGTGGGTAGCTGCAGGAGTGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1467#0 CTGCGCAATCAGATCCACGTTAAGTCTCCCCCGAGAGAAGGCAGCCAGGGTGAACTTGCA 60 consensus_1467#1 ------------------------------------------------------------ consensus_1467#0 CCTGCCAACAGCCAAACTCGGATGAGCACCAACATGTGAGGAAGATGCCGTCACCAGAGT 120 consensus_1467#1 ------------------------------------------------------------ consensus_1467#0 CTGCATGCTGACCCTGCTGACAGCATCACCAGCCCGGAGGGTTGCCTCCAACACTCAACC 180 consensus_1467#1 ------------------------------------------------------------ consensus_1467#0 CTTATCCTCGCACCTTTTGTCTCTCTGCAGCAGACGGAAGGGACAAAACTTCAATGACTT 240 consensus_1467#1 --------------------CTCTCTGCAGCAGACGGGACGGACAGAACTTCAGTGACTT 40 ***************** * ***** ******* ****** consensus_1467#0 TACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAGATGTTTT 300 consensus_1467#1 TACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAAATGTTTT 100 **************************************************** ******* consensus_1467#0 GTTTTGTC-TGACCTGGAGAATTGAGAATGTGTTTTGATGAACTCAGCACTTCAGTTGTA 359 consensus_1467#1 GTTTTGTCGTGACCTGGAGAATTGAGAATGTGTTGTGATGGGCTCAGCGCTTCAGTTGGA 160 ******** ************************* ***** ****** ********* * consensus_1467#0 TGTTTAGTGGTAGGAGATGCACTTTGCTCTGCTTACACTTGT-TAACTGCAACAAGGTTT 418 consensus_1467#1 TGTGTAGTGGTAGGAGATGCACTTTGCTCTGCTGACACGTGGGTAGCTGCAGGAGTGGTT 220 *** ***************************** **** ** ** ***** * * ** consensus_1467#0 TAAAATAAAAAAATTACAAACATGTATGTTTTCACTGTTTTTCACTGTGGGAGATGAAGC 478 consensus_1467#1 ------------------------------------------------------------ consensus_1467#0 CTGTCACCTAAAACTTTTATTTTATTCTGTTTTTTGTTTTTTTTTGCAAGTGATCAAGGT 538 consensus_1467#1 ------------------------------------------------------------ consensus_1467#0 AAAGGTGTATTTGTATGGTTTAAACATAATTTCTACAGCCGAAATAAACTGCTTAAC 595 consensus_1467#1 --------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |