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Takifugu rubripes
cluster # 1467 cluster # 1467       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1467#0 length = 595 sequences # 2  
consensus_1467#1 length = 220 sequences # 1  

consensusID : consensus_1467#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 595
fasta sequence
                              [CTGCGCAATCAGATCCACGTTAAGTCTCCCCCGAGAGAAGGCAGCCAGGGTGAACTTGCACCTGCCAACAGCCAAACTCGGATGAGCACCAACATGTGAGGAAGATGCCGTCACCAGAGTCTGCATGCTGACCCTGCTGACAGCATCACCAGCCCGGAGGGTTGCCTCCAACACTCAACCCTTATCCTCGCACCTTTTGTCTCTCTGCAGCAGACGGAAGGGACAAAACTTCAATGACTTTACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAGATGTTTTGTTTTGTCTGACCTGGAGAATTGAGAATGTGTTTTGATGAACTCAGCACTTCAGTTGTATGTTTAGTGGTAGGAGATGCACTTTGCTCTGCTTACACTTGTTAACTGCAACAAGGTTTTAAAATAAAAAAATTACAAACATGTATGTTTTCACTGTTTTTCACTGTGGGAGATGAAGCCTGTCACCTAAAACTTTTATTTTATTCTGTTTTTTGTTTTTTTTTGCAAGTGATCAAGGTAAAGGTGTATTTGTATGGTTTAAACATAATTTCTACAGCCGAAATAAACTGCTTAAC]

[-] EMBL CA332994             [CTGCGCAATCAGATCCACGTTAAGTCTCCCCCGAGAGAAGGCAGCCAGGGTGAACTTGCACCTGCCAACAGCCAAACTCGGATGAGCACCAACATGTGAGGAAGATGCCGTCACCAGAGTCTGCATGCTGACCCTGCTGACAGCATCACCAGCCCGGAGGGTTGCCTCCAACACTCAACCCTTATCCTCCCACCTTTTGTCTCTCTGCAGCAGACGGAAGGGACAAAACTTCAATGACTTTACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAAATGTTTTGTTTTGTCTGACCTGGAGAATTGAAAATGTGTTTTGATGAACTCAGCACTTCAGTTGTATGTTTAGTGGTAGGAGATGCACTTTGCTCTGCTTACACTTGTTAACTGCAACAAGGTTTTAAAATAAAAAAATTACAAACATGTATGTTTTCACTGTTTTTCACTGTGGGAGATGAAGCCTGTCACCTAAAACTTTTATTTTATTCTGTTTTTTGTTTTTTTTTGCAAGTGATCAAGGTAAAGGTGTATTTGTATGGTTTAAACATAATTTCTACAGCCGAAATAAACTGCTTAAC]
[+] EMBL FR0057730            [                                                                                            CATGTGAGGAAGATGCCGTCACCAGAGTCTGCATGCTGACCCTGCTGACAGCATCACCAGCCCGGAGGGTTGCCTCCAACACTCAACCCTTATCCTCGCACCTTTTGTCTCTCTGCAGCAGACGGAAGGGACAAAACTTCAATGACTTTACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAGATGTTTTGTTTTGTCTGACCTGGAGAATTGAGAATGTGTTTTGATGAACTCAGCACTTCAGTTGTATGTTTAG                                                                                                                                                                                                                                     ]


>consensus_1467#0 CTGCGCAATCAGATCCACGTTAAGTCTCCCCCGAGAGAAGGCAGCCAGGGTGAACTTGCA CCTGCCAACAGCCAAACTCGGATGAGCACCAACATGTGAGGAAGATGCCGTCACCAGAGT CTGCATGCTGACCCTGCTGACAGCATCACCAGCCCGGAGGGTTGCCTCCAACACTCAACC CTTATCCTCGCACCTTTTGTCTCTCTGCAGCAGACGGAAGGGACAAAACTTCAATGACTT TACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAGATGTTTT GTTTTGTCTGACCTGGAGAATTGAGAATGTGTTTTGATGAACTCAGCACTTCAGTTGTAT GTTTAGTGGTAGGAGATGCACTTTGCTCTGCTTACACTTGTTAACTGCAACAAGGTTTTA AAATAAAAAAATTACAAACATGTATGTTTTCACTGTTTTTCACTGTGGGAGATGAAGCCT GTCACCTAAAACTTTTATTTTATTCTGTTTTTTGTTTTTTTTTGCAAGTGATCAAGGTAA AGGTGTATTTGTATGGTTTAAACATAATTTCTACAGCCGAAATAAACTGCTTAAC



consensusID : consensus_1467#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence
                              [CTCTCTGCAGCAGACGGGACGGACAGAACTTCAGTGACTTTACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAAATGTTTTGTTTTGTCGTGACCTGGAGAATTGAGAATGTGTTGTGATGGGCTCAGCGCTTCAGTTGGATGTGTAGTGGTAGGAGATGCACTTTGCTCTGCTGACACGTGGGTAGCTGCAGGAGTGGTT]

[+] EMBL FR0056650            [CTCTCTGCAGCAGACGGGACGGACAGAACTTCAGTGACTTTACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAAATGTTTTGTTTTGTCGTGACCTGGAGAATTGAGAATGTGTTGTGATGGGCTCAGCGCTTCAGTTGGATGTGTAGTGGTAGGAGATGCACTTTGCTCTGCTGACACGTGGGTAGCTGCAGGAGTGGTT]


>consensus_1467#1 CTCTCTGCAGCAGACGGGACGGACAGAACTTCAGTGACTTTACTGTCCTGACACGATCCC TGCTGCCCCGCTACACGATCAGGGCGGGGACAAATGTTTTGTTTTGTCGTGACCTGGAGA ATTGAGAATGTGTTGTGATGGGCTCAGCGCTTCAGTTGGATGTGTAGTGGTAGGAGATGC ACTTTGCTCTGCTGACACGTGGGTAGCTGCAGGAGTGGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1467#0      CTGCGCAATCAGATCCACGTTAAGTCTCCCCCGAGAGAAGGCAGCCAGGGTGAACTTGCA 60
consensus_1467#1      ------------------------------------------------------------
                                                                                  

consensus_1467#0      CCTGCCAACAGCCAAACTCGGATGAGCACCAACATGTGAGGAAGATGCCGTCACCAGAGT 120
consensus_1467#1      ------------------------------------------------------------
                                                                                  

consensus_1467#0      CTGCATGCTGACCCTGCTGACAGCATCACCAGCCCGGAGGGTTGCCTCCAACACTCAACC 180
consensus_1467#1      ------------------------------------------------------------
                                                                                  

consensus_1467#0      CTTATCCTCGCACCTTTTGTCTCTCTGCAGCAGACGGAAGGGACAAAACTTCAATGACTT 240
consensus_1467#1      --------------------CTCTCTGCAGCAGACGGGACGGACAGAACTTCAGTGACTT 40
                                          ***************** * ***** ******* ******

consensus_1467#0      TACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAGATGTTTT 300
consensus_1467#1      TACTGTCCTGACACGATCCCTGCTGCCCCGCTACACGATCAGGGCGGGGACAAATGTTTT 100
                      **************************************************** *******

consensus_1467#0      GTTTTGTC-TGACCTGGAGAATTGAGAATGTGTTTTGATGAACTCAGCACTTCAGTTGTA 359
consensus_1467#1      GTTTTGTCGTGACCTGGAGAATTGAGAATGTGTTGTGATGGGCTCAGCGCTTCAGTTGGA 160
                      ******** ************************* *****  ****** ********* *

consensus_1467#0      TGTTTAGTGGTAGGAGATGCACTTTGCTCTGCTTACACTTGT-TAACTGCAACAAGGTTT 418
consensus_1467#1      TGTGTAGTGGTAGGAGATGCACTTTGCTCTGCTGACACGTGGGTAGCTGCAGGAGTGGTT 220
                      *** ***************************** **** **  ** *****  *  * **

consensus_1467#0      TAAAATAAAAAAATTACAAACATGTATGTTTTCACTGTTTTTCACTGTGGGAGATGAAGC 478
consensus_1467#1      ------------------------------------------------------------
                                                                                  

consensus_1467#0      CTGTCACCTAAAACTTTTATTTTATTCTGTTTTTTGTTTTTTTTTGCAAGTGATCAAGGT 538
consensus_1467#1      ------------------------------------------------------------
                                                                                  

consensus_1467#0      AAAGGTGTATTTGTATGGTTTAAACATAATTTCTACAGCCGAAATAAACTGCTTAAC 595
consensus_1467#1      ---------------------------------------------------------
                                                                               




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)