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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1468#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[GGCCTTCGGCATCAAATGTCTTGGCTCATGTCAGCAGCAGTAATTGGGATCCATTAACCACGGAGCCGCCAGGCACCTGTTTCCCAACGCCGCCGCCGCCGGAGTGGCGCGTTTTTCAGCCCTCTCTCAGACCTCCATCTGTTACATGAGTGAGGTGGAGGACGTTCAGATTTCAGTGTACAATTTAAGACATTTCAAACTGTTTTTTTTTCCTGCAGCATTCATGTTGCATTTATAAAGTGTCATAGATATTGTACATACACACCACAAAAAGTACTAAGATGCAATAGGTATATAATATAAGTGTTATTCTAATTGATGTGTTTTCCATATATGCATGTCTAGGATGTAAGAAAATGTTTTATTTAGTTTTTAGATTGTTTACTCCCAAATAATAACCTGATTATAACTTGTTATTTTAAGTGTTTAGGAGTATATTAAGTTGTTTATCTCCCGGGACATAATTGAAGCAGTTGGAGTGCTCTGATGTTTTGTCTCAAACTTTTGTATCGTTCATCGAATGTCCTAATTGTCATTTTAGGCAGTGCATTAATTTGCTTTAGTTTGTTTACATCCATGATGGACGCAACGTCTGTAACTTG]
[+] EMBL CA330257 [GGCCTTCGGCATCAAATGTCTTGGCTCATGTCAGCAGCAGTAATTGGGATCCATTAACCACGGAGCCGCCAGGCACCTGTTTCCCAACGCCGCCGCCGCCGGAGTGGCGCGTTTTTCAGCCCTCTCTCAGACCTCCATCTGTTACATGAGTGAGGTGGAGGACGTTCAGATTTCAGTGTACAATTTAAGACATTTCAAACTGTTTTTTTTTCCTGCAGCATTCATGTTGCATTTATAAAGTGTCATAGATATTGTACATACACACCACAAAAAGTACTAAGATGCAATAGGTATATAATATAAGTGTTATTCTAATTGATGTGTTTTCCATATATGCATGTCTAGGATGTAAGAAAATGTTTTATTTAGTTTTTAGATTGTTTACTCCCAAATAATAACCTGATTATAACTTGTTATTTTAAGTGTTTAGGAGTATATTAAGTTGTTTATCTCCCGGGACATAATTGAAGCAGTTGGAGTGCTCTGATGTTTTGTCTCAAACTTTTGTATCGTTCATCGAATGTCCTAATTGTCATTTTAGGCAGTGCATTAATTTGCTTTAGTTTGTTTACATCCATGATGGACGCAACGTCTGTAACTTG]
consensusID : consensus_1468#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 446 fasta sequence
[ACATTTGGAGACTCACACACACATCCAACCTCAGCTGTCTGGACTCAAACGAGAGTCTACGGGGTGGAAAGAGCCAGATACAACTCATTTCTAACCCCATTTACTTTCAAAGATGTAAACCAGAGAGAGGACGGGACAACGTAGGACAGGCAGAAATCTCATCCAAGCTTCATCAAGCAGGATTGAACGGAGGTTTTTTTTAAAAATGCTTTTGTAATCCAGCCGTGGTGGGTTGATTAAATTAACACGAAACACTGTTGAGGAGCCTTTCTACACATACCTTCTCTGATGGGGGGGTGGTGGCAAAAACGGTTCTGACCGTACAAAGCTGCAGAATCGGCGGGATCACTCACCACTCGCCGCCACTCGGCCTTCGGCATCAAATGTCTTGGCTCATGTCAGCAGCAGTAATTGGGATCCATTAACCACGGAGGCGGCGGGCAACC]
[+] EMBL FR0063330 [ACATTTGGAGACTCACACACACATCCAACCTCAGCTGTCTGGACTCAAACGAGAGTCTAC TAATGGAAAGAGCCAGATACAACTCATTTCTAACCCCATTTACTTTCAAAGATGTAAACCAGAGAGAGGACGGGACAACGTAGGACAGGCAGAAATCTCATCCAAGCTTCATCAAGCAGGATTGAACGGAGTTTTTTTTTAAAAATGCTTTTGTAATCCAGCCGTGGTGGGTTGATTAAATTAACACGAAACACTGTTGAGGTGCCTTTCTACACATACCTTCTCTGATGGGGGGGTGG GGCAAAAACGGTTCTGACCGTACAAAGCTGCAGAATCGGCGGGATCACTCACCACTCGCCGCCACTCGGCCTTCGGCATCAAATGTCTTGGCTCATGTCAGCAGCAGTAATTTGGATCCATTAACCACAGAGGCGGCGGGCAACC]
[+] EMBL FR0063210 [ CACACATCCAACCTCAGCTGTCTGGACTCAAACGAGAGTCTACGGGGTGGAAAGAGCCAGATACAACTCATTTCTAACCCCATTTACTTTCAAAGATGTAAACCAGAGAGAGGACGGGACAACGTAGGACAGGCAGAAATCTCATCCAAGCTTCATCAAGCAGGATTGAACGGTAGTTTTTTTTAAAAATGCTTTTGTAATCCAGCCGTGGTGGGTTGATTAAATTAACACGAAACACTGTTGAGGAGCCTTTCTACACATACCTTCTCTGATGGGGGGGTGGTTGCAAAAACGGTTCTGACCGTACAAAGCTGCAGAATCGGCGGCATTACTCACCACTCGCCGCCACTCTGTCTTCGGCATCAAATGTCTTGGCTCATGTCAGCAGCAGTAATTGGGATCCATTAACCACGGAACCGc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1468#0 GGCCTTCGGCATCAAATGTCTTGGCTCATGTCAGCAGCAGTAATTGGGATCCATTAACCA 60
consensus_1468#1 ------------------------------------------------------------
consensus_1468#0 CGGAGCCGCCAGGCACCTGTTTCCCAACGCCGCCGCCGCCGGAGTGGCGCGTTTTTCAGC 120
consensus_1468#1 --------------------------------------------------ACATTTGGAG 10
***
consensus_1468#0 CCTCTCTCAGACCTCCATCTGTTACATGAGTGAGGTGGAGGACGTTCAGATTTCAGTGTA 180
consensus_1468#1 ACTCACACACACATCCA------ACCTCAGCTGTCTGGA-----CTCAAACGAGAGTCTA 59
*** * ** ** **** ** * ** **** *** * *** **
consensus_1468#0 CAATTTAAGACATTTCAAACTGTTTTTTTTTCCTGCAGCATTCATGTTGCATTTATAAAG 240
consensus_1468#1 CGGGGTGGAAAGAGCCAGATACAACTCATTTCTAACCCCATTTACTTT----CAAAGATG 115
* * * ** * * **** * **** * ** * * *
consensus_1468#0 TGTCATAGATATTGTACATACACACCACAAAAAGTACTAAGATGCAATAGGTATATAATA 300
consensus_1468#1 TAAACCAGAGAGAGGACGGG-ACAACGTAGGACAGGCAGAAATCTCATCCAAGCTTCAT- 173
* *** * * ** *** * * * * * ** ** * **
consensus_1468#0 TAAGTGTTATTCTAATTGATGTGTTTTCCATATATGCATGTCTAGGATGTAAGAAAATGT 360
consensus_1468#1 CAAGCAGGATTG-AACGGAGGTTTTTTTTAAAAATGCTTTTGTAATCCAGCCGTGGTGGG 232
*** *** ** ** ** **** * * **** * * ** * *
consensus_1468#0 TTTATTTAGTTTTTAGATTGTTTACTCCCAAATAATAACCTGATTATAACTTGTTATTTT 420
consensus_1468#1 TTGATTAAATT--AACACGAAACACTGTTGAGGAG---CCTTTCTACACATACCTTCTCT 287
** *** * ** * * *** * * *** ** * * * * *
consensus_1468#0 AAGTGTTTAGGAGTATATTAAGTTGTTTATCTCCCGGGACATAATTGAAGCAGTTGGAGT 480
consensus_1468#1 GATGGGGGGGTGGTGGCAAAAACGGTTCTGACCGTACAAAGCTGCAGAATCGGCGGGATC 347
* * * ** ** *** * * *** * * ***
consensus_1468#0 GCTCTGATGTTTTGTCTCAAACTTTTGTATCGTTCATCGAATGTCCTAATTGTCATTTTA 540
consensus_1468#1 ACTC--ACCACTCGCCGCCA--CTCGGCCTTCGGCATCAAATGTCTTGGC--TCATGTCA 401
*** * * * * * * * * * **** ****** * **** * *
consensus_1468#0 GGCAGTGCATTAATTTGCTTTAGTTTGTTTACATCCATGATGGACGCAACGTCTGTAACT 600
consensus_1468#1 G-CAG--CAGTAATTGGGATCCATTAACC-ACGGAGGCGGCGG--GCAACC--------- 446
* *** ** ***** * * ** ** * ** *****
consensus_1468#0 TG 602
consensus_1468#1 --
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |