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These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 1469 cluster # 1469       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1469#0 length = 152 sequences # 2  
consensus_1469#1 length = 67 sequences # 1  

consensusID : consensus_1469#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 152
fasta sequence
                              [TGAAGCTGCACCGAATCATTTTCTGTTAAAAAGGACAAGTTTTGACTCAAGTGACTGCTGGAATCAACGTTTCAAGACACTCGGCTGTCTTGCTTGACATGAAGTTGTGAACTTAATAAAGTCAAATATGTCAAAACNAAAAAAAAAAAAAA]

[+] EMBL CA845578             [TGAAGCTGCACCGAATCATTTTCTGTTAAAAAGGACAAGTTTTGACTCCAGTGACTGCTGGAATCAACGTTTCAAGACACTCGGCTGTCTTGCTTGACATGAAGTTGTGAACTTAATAAAGTCAAATATGTCAAAACNAAAAAAAAAAAAAA]
[+] EMBL CA847167             [                             AAAGGACAAGTTTTGACTCAAGTGACTGCTGGAATCCTCCTTTCAAGACACTCGGCTGTCTTGCTTGACATGAAGTTGTGAACTTAATAAAGTCAAATATGTCAAAAC               ]


>consensus_1469#0 TGAAGCTGCACCGAATCATTTTCTGTTAAAAAGGACAAGTTTTGACTCAAGTGACTGCTG GAATCAACGTTTCAAGACACTCGGCTGTCTTGCTTGACATGAAGTTGTGAACTTAATAAA GTCAAATATGTCAAAACNAAAAAAAAAAAAAA



consensusID : consensus_1469#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 67
fasta sequence
                              [GAGTCAAAACTTGTCCTTTTTAACAGAAAATGATTCGGTGCAGCTTCAATTTACAGCTCTTTTCCCG]

[+] EMBL CA588710             [GAGTCAAAACTTGTCCTTTTTAACAGAAAATGATTCGGTGCAGCTTCAATTTACAGCTCTTTTCCCG]


>consensus_1469#1 GAGTCAAAACTTGTCCTTTTTAACAGAAAATGATTCGGTGCAGCTTCAATTTACAGCTCT TTTCCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1469#0      TGAAGCTGCACCGAATCATTTTCTGTTAAAAAGGACAAGTTTTGACTCAAGTGACTGCTG 60
consensus_1469#1      -------GAGTCAAAACTTGTCCTTTTTAACAGAAAATGATTCGGTGCAGCTTCAATTTA 53
                             *   * ** * * * ** ** ** ** * * * ** *   **  *      * 

consensus_1469#0      GAATCAACGTTTCAAGACACTCGGCTGTCTTGCTTGACATGAAGTTGTGAACTTAATAAA 120
consensus_1469#1      CAGCTCTTTTCCCG---------------------------------------------- 67
                       *       *  *                                               

consensus_1469#0      GTCAAATATGTCAAAACNAAAAAAAAAAAAAA 152
consensus_1469#1      --------------------------------
                                                      




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)