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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1486#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 730 fasta sequence
[TAGAAATACACATGGTGCATCAATGGGCAAAGGCTGGATATAGCTCAGATATCTACCCGAGGTTACAAACTAGCTACCACAGAGTTCCACATCATCATTGAAATCCCCATAGGTGCCCCTGATGGTTATTTTAAGAGTCACGCCCCAGATTACCAATACCACGTCGTGTACACGGTTGAGCCCATGCTCGAGGTTCTATGGACTGCAAGCAACGGCCGCGAAGACACCAGATACAAGGTTCTGTTTCCAATTACCACACCACGTGATTGCTCGACCACCCCGCCACCAAGACGACACCTCTACCGGAGACCGGATGTTTGCTGTTCTACTGGGAGACTTTCTTCAAGATGTTGAGCTGAGGAACATCACTTTCACAACTGGGGTTCTTACTGTGCAGGAGTGCAACGCCAGAGGCTACATTGTCCAGGAACACACCACCCTTGATAACTCCAAGGGCTTTTCCTTGCATGTGCCCTTTGACACTGACGTTGTCCTCAAAAGGAATCCTGAACTGTTGGTCACCAAGTATGTTCTTCCTGTGAGCTTTGGTCTGGTAGTTGTGCCTGAAGAGGTGCCTTTCAGTCACACATTAGAGCTCCATGCTAATCTAGAGGATGTTGTGCTGCCCTCCCTTACCGGCATCTGTGATGAGAGCAATTTTTACCTCTCTGTGAAATATGGCAGTCAAGGGAGCAATTTCCAGACCTGGCTTGGTCATCAACACTTGACA]
[+] EMBL CA846375 [TAGAAATACACATGGTGCATCAATGGGCAAAGGCTGGATATAGCTCAGATATCTACCCGAGGTTACAAACTAGCTACCACAGAGTTCCACATCATCATTGAAATCCCCATAGGTGCCCCTGATGGTTATTTTAAGAGTCACGCCCCAGATTACCAATACCACGTCGTGTACACGGTTGAGCCCATGCTCGAGGTTCTATGGACTGCAAGTAACGGCCGCGAAGACACCAGATACAAGGTTCTGTTTCCAATTACCACACCAC TGATTGCTCGACCACCCCGCCACCAAGACGACACCTCTACCGGAGACCGGATGTTTGCTGTTCTACTGGGAGACTTTCTTCAAGATGTTGAGCTGAGGAACATCACTTTCACAACTGGGGTTCTTACTGTGCAGGAGTGCAACGCCAGAGGCTACATTGTCCAGGAACACACCACCCTTGATAACTCCAAGGGCTTTTCCTTGCATGTGCCCTTTGACACTGACGTTGTCCTCAAAAGGAATCCTGAACTGTTGGTCACCAAGTATGTTCTTCCTGTGAGCTTTGGTCTGGTAGTTGTGCCTGAAGAGGTGCCTTTCAGTCACACATTAGAGCTCCATGCTAATCTAGAGGATGTTGTGCTGCCCTCCCTTACCGGCATCTGTGATGAGAGCAATTTTTACCTCTCTGTGAAATATGGCAGTCAAGGGAGCAATTTCCAGACCTGGCTTGGTCATCAACACTTGACA]
[+] EMBL FR0057078 [ TAGGTGCCCCTGATGGTTATTTTAAGAGTCACGCCCCAGATTACCACTACCACGTCGTGTACACAGTTGTGCCCATGTTCGACGTTCTATGGACTGCATGCAACGGCCACGACGACACCACATACAAGGTTCTGTTTCCAATTATCACACCACGTGATTGCTCGACCACCCCGCCATCAAGACTACACCTCTACCGGCGACCGGATGTTTGCTGTTCTACTGGGAGACTTTCTTCAAGATGTTGACCTGAGGAATATCACT ]
consensusID : consensus_1486#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence
[CAATTTCCAGACCTGGCTTGGTCATCAACACTTGACAGAGGAGGTGTTAGAACTTTACAACTTCCAGGAAAATGGCACCCACTTCAGCCTCATCGTGCCATACAATGCCAAGGACACAGCATTCGAGATAATTACATCAAACTCCATCAGAGCCAGGGCTGACCTGCTTCTGTATGATCACATCAACAACCGGGCACTGGCTAATCTCTTCCTGGCCTGCACCTTCCCCTTGATAACAACTAATTGTTACTCCAATGGAACAATGACTGCTGTGGCTGTGAAAGTGGAATCGCTGAACAACCTCACCCCAGGTTCCCTGACCCTGAAGGACACTTCATGCAAACCAGTGTTCAGTGACGACCGCTTCGCCTATTTCTCATTCAGCGTTGATTCCTGTGGTACCACAAGAACATTCTTCAGC]
[+] EMBL CA846464 [CAATTTCCAGACCTGGCTTGGTCATCAACACTTGACAGAGGAGGTGTTAGAACTTTACAACTTCCAGGAAAATGGCACCCACTTCAGCCTCATCGTGCCATACAATGCCAAGGACACAGCATTCGAGATAATTACATCAAACTCCATCAGAGCCAGGGCTGACCTGCTTCTGTATGATCACATCAACAACCGGGCACTGGCTAATCTCTTCCTGGCCTGCACCTTCCCCTTGATAACAACTAATTGTTACTCCAATGGAACAATGACTGCTGTGGCTGTGAAAGTGGAATCGCTGAACAACCTCACCCCAGGTTCCCTGACCCTGAAGGACACTTCATGCAAACCAGTGTTCAGTGACGACCGCTTCGCCTATTTCTCATTCAGCGTTGATTCCTGTGGTACCACAAGAACATTCTTCAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1486#0 TAGAAATACACATGGTGCATCAATGGGCAAAGGCTGGATATAGCTCAGATATCTACCCGA 60
consensus_1486#1 ---------------------------CAATTTCCAGACCTGGCTTGGTCATCAACACTT 33
*** * ** * *** * *** ** *
consensus_1486#0 GGTTACAAACTAGCTACCACAGAGTTCCACATCATCATTGAAATCCCCATAGGTGCCCCT 120
consensus_1486#1 G---ACAGAGGAGGTGTTA--GAACTTTACAACTTCCAGGAAAAT------GGCACCC-- 80
* *** * ** * * ** * *** * ** **** ** ***
consensus_1486#0 GATGGTTATTTTAAGAGTCACGCCCCAGATTACCAATACCACGTCGTGTACACGGTTGAG 180
consensus_1486#1 -------ACTTCA--------GCCTCATCGTGCCA-TACAATGCCAAGGACACAGC---- 120
* ** * *** ** * *** *** * * * * **** *
consensus_1486#0 CCCATGCTCGAGGTTCTATGGACTGCAAGCAACGGCCGCGAAGACACCAGATACAAGGTT 240
consensus_1486#1 -----ATTCGAGAT------AATTACATCAAACTCCATCAGAGCCAGGGCTGACCTGCTT 169
***** * * * ** *** * * ** ** ** * **
consensus_1486#0 CTGTTTCCAATTACCACACCACGTGATTGCTCGACCACCCCGCCACCAAGACGACACCTC 300
consensus_1486#1 CTGTAT--GATCACATCAACAACCGGGCACTGGCTAATCT--CTTCCTGGCCTGCACCTT 225
**** * ** ** ** ** * ** * * * * ** * * *****
consensus_1486#0 TACCG-GAGACCGGATGTTTGCTGTTCTACTGGGAGACTTTCTTCAAGATGTTGAGCTGA 359
consensus_1486#1 CCCCTTGATAACAACTAATTGTTACTCCAATGGAACAATGACT----GCTGT--GGCTGT 279
** ** * * * *** * ** * *** * * * ** * *** ****
consensus_1486#0 GGAACATCACTTTCACAACTGGGGTTCTTACTGTGCAGGAGTGCAACGCCAGAGGCTACA 419
consensus_1486#1 GAAAGTGGAATCGCTGAACAA----CCTCACCCCA-GGTTCCCTGACCCTGAAGGACACT 334
* ** * * * *** ** ** * ** * *** **
consensus_1486#0 TTGTCCAGGAACACACCACCCTTGATAACTCCAAGGGCTTTTCCTTGCATGTGCCCTTTG 479
consensus_1486#1 TCATGCA--AACCAGTGTTCAGTGACGACCGCTTCGCCTATTTCTCAT---TCAGCGTTG 389
* * ** *** * *** ** * * ** ** ** * * ***
consensus_1486#0 ACACTGACGTTGTCCTCAAAAGGAATCCTGAACTGTTGGTCACCAAGTATGTTCTTCCTG 539
consensus_1486#1 ATTCCTGTGGTA-CCACAAGAACATTCTTCAGC--------------------------- 421
* * * * ** *** * * ** * * *
consensus_1486#0 TGAGCTTTGGTCTGGTAGTTGTGCCTGAAGAGGTGCCTTTCAGTCACACATTAGAGCTCC 599
consensus_1486#1 ------------------------------------------------------------
consensus_1486#0 ATGCTAATCTAGAGGATGTTGTGCTGCCCTCCCTTACCGGCATCTGTGATGAGAGCAATT 659
consensus_1486#1 ------------------------------------------------------------
consensus_1486#0 TTTACCTCTCTGTGAAATATGGCAGTCAAGGGAGCAATTTCCAGACCTGGCTTGGTCATC 719
consensus_1486#1 ------------------------------------------------------------
consensus_1486#0 AACACTTGACA 730
consensus_1486#1 -----------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |