These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1492#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 778 fasta sequence [GAAAGCAACCAATAATAGTCCCTGTTGTCTCAACGTAATCGTGCCTCTTTTTTGAATCCGTTCAATGCCACAGAATAATAACTGGACCTGTTAAAATATGTGAGTAGGTGTGTCGACAATGGCATAAAGTAGGTTGTAGAGCTAGAGCTAAAGTTAGGAGAAGACGGAAACTGGTAGCTGAAGTGCTTTAGCTGCAGGTATCATATTGTTAGCTAGCTCTATATATAGTTACCGTACGTTATTTATTTACTACTTTGACTAACCGAGCTTGTTTTGTAAATGTAATTCAAGTTGTTTGCTACTGTTCAGCCTCCCAGCAAAAGACGGCTTTTTAAACCAAAACTGCCGTGTCACTGACAGGCATTATACAAGCTACTGAACAAAAAAAACACTAGTTTAGCCAAACACTCGAACCGCAGTGTTAAGCCAAAGCGCTAATCTGATGATGGCCGAGGACACCCGACAGGACAAGAGAGCCAGCTTCTCGGCTATTACCGAGCACAGTCGCAACGGGATGGCCAGGACATCTGCCGTGGCCTCGACCAAAACCGGTGCTTCAAAGAAGATAGTGATCAAGAATTTCAAAGACAGACCTAAACTATCAGAGAACTACACAGAGGACACGTGGCTGAAGCTCCGCGATGCAGTCGGTGCCATCCAGAACAGCACTTCTATCCAGTACAACCTGGAAGAGCTCTATTAGGCAGGAGAAAATCTTTGTTCGTATAAAGTCTCCCCAACACTGTACAAGCAGCTTCGGCAGGTCTGTGAAGACCAC] [+] EMBL BU804801 [GAAAGCAACCAATAATAGTCCCTGTTGTCTCAACGTAATCGTGCCTCTTTTTTGAATCCGTTCAATGCCACAGAATAATAACTGGACCTGTTAAAATATGTGAGTAGGTGTGTCGACAATGGCATAAAGTAGGTTGTAGAGCTAGAGCTAAAGTTAGGAGAAGACGGAAACTGGTAGCTGAAGTGCTTTAGCTGCAGGTATCATATTGTTAGCTAGCTCTATATATAGTTACCGTACGTTATTTATTTACTACTTTGACTAACCGAGCTTGTTTTGTAAATGTAATTCAAGTTGTTTGCTACTGTTCAGCCTCCCAGCAAAAGACGGCTTTTTAAACCAAAAC GCCGTGTCACTGACAGGCATTATACAAGCTACTGAACAAAAAAAACACTAGTTTAGCCAAACACTCGAACCGCAGTGTTAAGCCAAAGCGCTAATCTGATGATGGCCGAGGA ] [+] EMBL CA588643 [ TAGAGCTAGAGCTAAAGTTAGGAGAAGACGGAAACTGGTAGCTGAAGTGCTTTAGCTGCAGGTATCATATTGTTAGCTAGCTCTATATATAGTTACCGTACGTTATTTATTTACTACTTTGACTAACCGAGCTTGTTTTGTAAATGTAATTCAAGTTGTTTGCTACTGTTCAGCCTCCCAGCAAAAGACGGCTTTTTAAACCAAAACTTTTTTGTTACTGACAGGCATTATACAAGCTATTGAACAAAAAAAACACTAGTTTAGCCAAACACTCGAACCGCAGTGTTAAGCCAAAGCGCTAATCTGATGATGGCCGAGGACACCCGACAGGACAAGAGAGCCAGCTTCTCGGCTATTACCGAGCACAGTCGCAACGGGATGGCCAGGACATCTGCCGTGGCCTCGACCAAAACCGGTGCTTCAAAGAAGATAGTGATCAAGAATTTCAAAGACAGACCTAAACTATCAGAGAACTACACAGAGGACACGTGGCTGAAGCTCCGCGATGCAGTCGGTGCCATCCAGAACAGCACTTCTATCCAGTACAACCTGGAAGAGCTCTATTAGGCAGGAGAAAATCTTTGTTCGTATAAAGTCTCCCCAACACTGTACAAGCAGCTTCGGCAGGTCTGTGAAGACCAC] consensusID : consensus_1492#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [CTGTTGTCTCAACGTAATCGTGCCTCTTTTTTGAATCCGTTCAATGCCACAGAATAATAACTGGACCTGTTAAAATATGTGAGTAGGTGTGCCGACAATGGCATAAAGTAGGTTGTAGAGCTAGAGCTAAAGTTAGGAGAAGACGGAAACTGGTAGCTGAAGTGCTTTAGCTGCAGCCTCCCAGCAAAAGACGGCTTTTTAAACCAAAACGCCGTGTCACTGACAGGCATTATACAAGCTACTGAACAAAAAAAACACTAGTTTAGCCAAACACTCGAACCGCAGTGTTAAGCCAAAGCGCTAATCTGATGATGGCCGAGGACACCCGACAGGACAAGAGAGCCAGCTTCTCGGCTATTACCGAGCACAGTCGCAACGGGATGGCCAGGACATCTGCCGTGGCCTCGACCAAAACCGGTGCTTCAAAGAAGATAGTGATCAAGAATTTCAAAGACAGACCTAAACTATCGGAGAACTACACAGAGGACACGTGGCTGAAGCTCCGCGATGCAGTCGGTGCCATCCAGAACAGCACTTCTATCCAGTACAACCTGGAAGAGCTCTATCAGGCAGTAGAAAATCTCTGTTCGTATAAAGTCTCCCCAACACTGTACAAGCA] [+] EMBL CA333219 [CTGTTGTCTCAACGTAATCGTGCCTCTTTTTTGAATCCGTTCAATGCCACAGAATAATAACTGGACCTGTTAAAATATGTGAGTAGGTGTGCCGACAATGGCATAAAGTAGGTTGTAGAGCTAGAGCTAAAGTTAGGAGAAGACGGAAACTGGTAGCTGAAGTGCTTTAGCTGCAGCCTCCCAGCAAAAGACGGCTTTTTAAACCAAAACGCCGTGTCACTGACAGGCATTATACAAGCTACTGAACAAAAAAAACACTAGTTTAGCCAAACACTCGAACCGCAGTGTTAAGCCAAAGCGCTAATCTGATGATGGCCGAGGACACCCGACAGGACAAGAGAGCCAGCTTCTCGGCTATTACCGAGCACAGTCGCAACGGGATGGCCAGGACATCTGCCGTGGCCTCGACCAAAACCGGTGCTTCAAAGAAGATAGTGATCAAGAATTTCAAAGACAGACCTAAACTATCGGAGAACTACACAGAGGACACGTGGCTGAAGCTCCGCGATGCAGTCGGTGCCATCCAGAACAGCACTTCTATCCAGTACAACCTGGAAGAGCTCTATCAGGCAGTAGAAAATCTCTGTTCGTATAAAGTCTCCCCAACACTGTACAAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1492#0 GAAAGCAACCAATAATAGTCCCTGTTGTCTCAACGTAATCGTGCCTCTTTTTTGAATCCG 60 consensus_1492#1 ---------------------CTGTTGTCTCAACGTAATCGTGCCTCTTTTTTGAATCCG 39 *************************************** consensus_1492#0 TTCAATGCCACAGAATAATAACTGGACCTGTTAAAATATGTGAGTAGGTGTGTCGACAAT 120 consensus_1492#1 TTCAATGCCACAGAATAATAACTGGACCTGTTAAAATATGTGAGTAGGTGTGCCGACAAT 99 **************************************************** ******* consensus_1492#0 GGCATAAAGTAGGTTGTAGAGCTAGAGCTAAAGTTAGGAGAAGACGGAAACTGGTAGCTG 180 consensus_1492#1 GGCATAAAGTAGGTTGTAGAGCTAGAGCTAAAGTTAGGAGAAGACGGAAACTGGTAGCTG 159 ************************************************************ consensus_1492#0 AAGTGCTTTAGCTGCAGGTATCATATTGTTAGCTAGCTCTATATATAGTTACCGTACGTT 240 consensus_1492#1 AAGTGCTTTAGCTGCAG------------------------------------------- 176 ***************** consensus_1492#0 ATTTATTTACTACTTTGACTAACCGAGCTTGTTTTGTAAATGTAATTCAAGTTGTTTGCT 300 consensus_1492#1 ------------------------------------------------------------ consensus_1492#0 ACTGTTCAGCCTCCCAGCAAAAGACGGCTTTTTAAACCAAAACTGCCGTGTCACTGACAG 360 consensus_1492#1 ---------CCTCCCAGCAAAAGACGGCTTTTTAAACCAAAAC-GCCGTGTCACTGACAG 226 ********************************** **************** consensus_1492#0 GCATTATACAAGCTACTGAACAAAAAAAACACTAGTTTAGCCAAACACTCGAACCGCAGT 420 consensus_1492#1 GCATTATACAAGCTACTGAACAAAAAAAACACTAGTTTAGCCAAACACTCGAACCGCAGT 286 ************************************************************ consensus_1492#0 GTTAAGCCAAAGCGCTAATCTGATGATGGCCGAGGACACCCGACAGGACAAGAGAGCCAG 480 consensus_1492#1 GTTAAGCCAAAGCGCTAATCTGATGATGGCCGAGGACACCCGACAGGACAAGAGAGCCAG 346 ************************************************************ consensus_1492#0 CTTCTCGGCTATTACCGAGCACAGTCGCAACGGGATGGCCAGGACATCTGCCGTGGCCTC 540 consensus_1492#1 CTTCTCGGCTATTACCGAGCACAGTCGCAACGGGATGGCCAGGACATCTGCCGTGGCCTC 406 ************************************************************ consensus_1492#0 GACCAAAACCGGTGCTTCAAAGAAGATAGTGATCAAGAATTTCAAAGACAGACCTAAACT 600 consensus_1492#1 GACCAAAACCGGTGCTTCAAAGAAGATAGTGATCAAGAATTTCAAAGACAGACCTAAACT 466 ************************************************************ consensus_1492#0 ATCAGAGAACTACACAGAGGACACGTGGCTGAAGCTCCGCGATGCAGTCGGTGCCATCCA 660 consensus_1492#1 ATCGGAGAACTACACAGAGGACACGTGGCTGAAGCTCCGCGATGCAGTCGGTGCCATCCA 526 *** ******************************************************** consensus_1492#0 GAACAGCACTTCTATCCAGTACAACCTGGAAGAGCTCTATTAGGCAGGAGAAAATCTTTG 720 consensus_1492#1 GAACAGCACTTCTATCCAGTACAACCTGGAAGAGCTCTATCAGGCAGTAGAAAATCTCTG 586 **************************************** ****** ********* ** consensus_1492#0 TTCGTATAAAGTCTCCCCAACACTGTACAAGCAGCTTCGGCAGGTCTGTGAAGACCAC 778 consensus_1492#1 TTCGTATAAAGTCTCCCCAACACTGTACAAGCA------------------------- 619 ********************************* |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |