These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1515#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 621 fasta sequence [AAAAACTTCGAGCTTCTTCTCGAATGGGTTTGTTTTTTTAAATCTGCCGGGGTTTGATGGGTTCACCACTGCAGGCACTGCAAGAGGGCCGACTGCACAAAAGTCCAGCGTCCAACGTGCGGCGCTGGTCACGTTGTAGGAAAACGAGAGCGAGCAGCAACATCGATACAGAGGTGCAACCCCCACAAAATGGCCTCTCCTGTCCTCGCCAGCATGCCTGCAGCCTCCACTGGGACTGTGGTGGTCACGGATCATCTGAATTTCTGGGGAGGGAAGCGTGTGAAACCCAGGCAGGAAACCGACGCAGAGCCCGTGTTTGAGCCTGCAACTGGCCGTGTGCTGTGTCAGATGATCCCCTGTGGCTCTGAGGAGGTGGATGAAGCTGTTAAAAGAGCCCGCGGAGCATATCTGAAGTGGAGAGAGCTGTCAGGCATGGAGAGAGCCCGGGTGATGCTCGAGGCCGCTCGTATTATCAGGGAAAGGAGGGACAACATCGCAAAGCTGGAAGTGATCAACAACGGTAAATCGATCACCGAAGCCCTGGTGGATATTGATGTCGCCTGGCAGTGTATCGAGTACTACGCTGGTCTGGCTGGTGCGCTTGCAGGCCAGCACATCCAG] [+] EMBL BU805034 [AAAAACTTCGAGCTTCTTCTCGAATGGGTTTGTTTTTTTAAATCTGCCGGGGTTTGATGGGTTCACCACTGCAGGCACTGCAAGAGGGCCGACTGCACAAAAGTCCAGCGTCCAACGTGCGGCGCTGGTCACGTTGTAGGAAAACGAGAGCGAGCAGCAACATCGATACAGAGGTGCAACCCCCACAAAATGGCCTCTCCTGTCCTCGCCAGCATGCCTGCAGCCTCCACTGGGACTGTGGTGGTCACGGATCATCTGAATTTCTGGGGAGGGAAGCGTGTGAAACCCAGGCAGGAAACCGACGCAGAGCCCGTGTTTGAGCCTGCAACTGGCCGTGTGCTGTGTCAGATGATCCCCTGTGGCTCTGAGGAGGTGGATGAAGCTGTTAAAAGTGCCCGCGGAGCATATCTGAAGTGGAGAGAGCTGTCAGGCATGGAGAGAGCCCGGGTGATGCTCGAGGCCGCTCGTATTATCAGGGAAAGGAGGGACAACATCGCAAAGCTGGAAGTGATCAACAACGGTAAATCGATCACCGAAGCCCTGGTGGATATTGATGTCGCCTGGCAGTGTATCGAGTACTACGCTGGTCTGGCTGGTGCGCTTGCAGGCCAGCACATCCAG] [+] EMBL FR0063849 [ GTCCAACGTGCGGCGCTGGTCACGTTGTAGGAAAACGAGAGCGAGCAGCAACATCGATACAGAGGTGCAACCCCCACAAAATGG CTCTCCTGTCCTCGCCAGCATGCCTGCAGCCTCCACTGGGACTGTGGTGGTCACGGATCATCTGAATTTCTGGGGAGGGAAGCGTGTGAAACCCAGGCAGGAAACCGACGCAGAGCCCGTGTTTGAGCCTGCAACTGGCCGTGTGCTGTGTCAGATGATCCCCTGTGGCTCTGAGGAGGTGGATGAAGCTGTTAAAAGAGCCCGCGGAGCATATCTGAAGTGGAGAGAGCTGTCAGGCATGGAGAGAGCCCGGGTGATGCTCGAAGCCGCT ] consensusID : consensus_1515#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [AATAGAGCTCTGGTCTGTACTTCGAGCTTCTTCTCGAATGGGTGCAACCCCCACAAAATGGCCTCTCCTGTCCTCGCCAGCATGCCTGCAGCCTCCACTGGGACTGTGGTGGTCACGGATCATCTGAATTTCTGGGGAGGGAAGCGTGTGAAACCCAGGCAGGAAACCGACGCAGAGCCCGTGTTTGAGCCTGCAACTGGCCGTGTGCTGTGTCAGATGATCCCCTGTGGCTCTGAGGAGGTGGATGAAGCTGTTAAAAGTGCCCGCGGAGCATATCTGAAGTGGAGAGAGCTGTCAGGCATGGAGAGAGCCCGGGTGATGCTCGAGGCCGCTCGTATTATCAGGGAAAGGAGGGACAACATCGCATCTGGAAGTGATCAACAACGGTAAATCGATCACCGAAGCCCTGGTGGATATTGATGTCGCCTGGCAGTGTATCGAGTACTACGC] [+] EMBL BU804664 [AATAGAGCTCTGGTCTGTACTTCGAGCTTCTTCTCGAATGGGTGCAACCCCCACAAAATGGCCTCTCCTGTCCTCGCCAGCATGCCTGCAGCCTCCACTGGGACTGTGGTGGTCACGGATCATCTGAATTTCTGGGGAGGGAAGCGTGTGAAACCCAGGCAGGAAACCGACGCAGAGCCCGTGTTTGAGCCTGCAACTGGCCGTGTGCTGTGTCAGATGATCCCCTGTGGCTCTGAGGAGGTGGATGAAGCTGTTAAAAGTGCCCGCGGAGCATATCTGAAGTGGAGAGAGCTGTCAGGCATGGAGAGAGCCCGGGTGATGCTCGAGGCCGCTCGTATTATCAGGGAAAGGAGGGACAACATCGCATCTGGAAGTGATCAACAACGGTAAATCGATCACCGAAGCCCTGGTGGATATTGATGTCGCCTGGCAGTGTATCGAGTACTACGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1515#0 AAAAACTTCGAGCTTCTTCTCGAATGGGTTTGTTTTTTTAAATCTGCCGGGGTTTGATGG 60 consensus_1515#1 ------------------------------------------------------------ consensus_1515#0 GTTCACCACTGCAGGCACTGCAAGAGGGCCGACTGCACAAAAGTCCAGCGTCCAACGTGC 120 consensus_1515#1 -------------------------------------------------------AATAG 5 * consensus_1515#0 GGCGCTGGTCACGTTGTAGGAAAACGAGAGCGAGCAGCAACATCGATACAGAGGTGCAAC 180 consensus_1515#1 AGCTCTGGTC----TGTACTT---------CGAGCTTCTTC-TCGA---ATGGGTGCAAC 48 ** ****** **** ***** * * **** * ******** consensus_1515#0 CCCCACAAAATGGCCTCTCCTGTCCTCGCCAGCATGCCTGCAGCCTCCACTGGGACTGTG 240 consensus_1515#1 CCCCACAAAATGGCCTCTCCTGTCCTCGCCAGCATGCCTGCAGCCTCCACTGGGACTGTG 108 ************************************************************ consensus_1515#0 GTGGTCACGGATCATCTGAATTTCTGGGGAGGGAAGCGTGTGAAACCCAGGCAGGAAACC 300 consensus_1515#1 GTGGTCACGGATCATCTGAATTTCTGGGGAGGGAAGCGTGTGAAACCCAGGCAGGAAACC 168 ************************************************************ consensus_1515#0 GACGCAGAGCCCGTGTTTGAGCCTGCAACTGGCCGTGTGCTGTGTCAGATGATCCCCTGT 360 consensus_1515#1 GACGCAGAGCCCGTGTTTGAGCCTGCAACTGGCCGTGTGCTGTGTCAGATGATCCCCTGT 228 ************************************************************ consensus_1515#0 GGCTCTGAGGAGGTGGATGAAGCTGTTAAAAGAGCCCGCGGAGCATATCTGAAGTGGAGA 420 consensus_1515#1 GGCTCTGAGGAGGTGGATGAAGCTGTTAAAAGTGCCCGCGGAGCATATCTGAAGTGGAGA 288 ******************************** *************************** consensus_1515#0 GAGCTGTCAGGCATGGAGAGAGCCCGGGTGATGCTCGAGGCCGCTCGTATTATCAGGGAA 480 consensus_1515#1 GAGCTGTCAGGCATGGAGAGAGCCCGGGTGATGCTCGAGGCCGCTCGTATTATCAGGGAA 348 ************************************************************ consensus_1515#0 AGGAGGGACAACATCGCAAAGCTGGAAGTGATCAACAACGGTAAATCGATCACCGAAGCC 540 consensus_1515#1 AGGAGGGACAACATCGCAT--CTGGAAGTGATCAACAACGGTAAATCGATCACCGAAGCC 406 ****************** *************************************** consensus_1515#0 CTGGTGGATATTGATGTCGCCTGGCAGTGTATCGAGTACTACGCTGGTCTGGCTGGTGCG 600 consensus_1515#1 CTGGTGGATATTGATGTCGCCTGGCAGTGTATCGAGTACTACGC---------------- 450 ******************************************** consensus_1515#0 CTTGCAGGCCAGCACATCCAG 621 consensus_1515#1 --------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |