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Takifugu rubripes
cluster # 1580 cluster # 1580       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1580#0 length = 499 sequences # 2  
 consensus_1580#1 length = 432 sequences # 1  
consensusID : consensus_1580#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 499
fasta sequence 
                              [ATCAGTAAAAGGAGCGGAGCGGGTGAGACTCACAAGATCAATTAACCCTAAAAGCAGAAGGAGCGGAGCGGGTTGGATCAGCTGAGCCGAACTCACCAAGATGACTAAAGTGGGCTTCCTGCGTTTGTCCTATGAGAAGCAGGACACGCTCCTCAAGCTGCTCATCCTGTCCATGGCAGCCGTCCTCTCCTTCTCCACCAGACTCTTTTCTGTTTTGAGATTCGAAAGCGTCATCCATGAATTTGACCCGTACTTTAACTACCGCACCACTCGTTTCCTGGCAGAAGAAGGATTTTATAAGTTCCACAACTGGTTTGATGACCGGGCCTGGTACCCTCTGGGTCGCATTATCGGTGGCACCATTTACCCAGGGCTGATGATCACCTCGGCGCTGCTCTACCACGTCTTACACTTTTTCCACATCACCATCGACATCCGGAACGTCTGCGTGTTCTTGGCTCCCTTGTTCTCCTCCTTTACTGCCATCGTGACCTACCAC]

[+] EMBL CA588576             [ATCAGTAAAAGGAGCGGAGCGGGTGAGACTCACAAGATCAATTAACCTTATAAGC  ACGTTTCCCAAC GGTTGGATCAGCTGAGCCGAACTCACCAAGATGACTAAAGTGGGCTTCCTGCGTTTGTCCTATGAGAAGCAGGACACGCTCCTCAAGCTGCTCATCCTGTCCATGGCAGCCGTCCTCTCCTTCTCCACCAGACTCTTTTCTGTTTTGAGATTCGAAAGCGTCATCCATGAATTTGACCCGTACTTTAACTACCGCACCACTCGTTTCCTGGCAGAAGAAGGATTTTATAAGTTCCACAACTGGTTTGATGACCGGGCCTGGTACCCTCTGGATCGCATTATTTGTGGCACCATTTACCCAGGGCTGATGATCACCTCGGCGCTGCTCTACCACGTCTTACACTTTTTCCACATCACCATCGACATCCGGAACGTCTGCGTGTTCTTGGCT                                       ]
[+] EMBL CA845875             [                                            cCCCTAAAAGCAGAAGGAGCGGAGCGGGTTGGATCAGCTGAGCCTTACTCACCAAGATGACTAAAGTGGGCTTCCTGCGTTTGTCCTATGAGAAGCAGGACACGCTCCTCAAGCTGCTCATCCTGTCCATGGCAGCCGTCCTCTCCTTCTCCACCAGACTCTTTTCTGTTTTGAGATTCGAAAGCGTCATCCATGAATTTGACCCGTACTTTAACTACCGCACCACTCGTTTCCTGGCAGAAGAAGGATTTTATAAGTTCCACAACTGGTTTGATGACCGGGCCTGGTACCCTCTGGGTCGCATTATCGGTGGCACCATTTACCCAGGGCTGATGATCACCTCGGCGCTGCTCTACCACGTCTTACACTTTTTCCACATCACCATCGACATCCGGAACGTCTGCGTGTTCTTGGCTCCCTTGTTCTCCTCCTTTACTGCCATCGTGACCTACCAC]




>consensus_1580#0
ATCAGTAAAAGGAGCGGAGCGGGTGAGACTCACAAGATCAATTAACCCTAAAAGCAGAAG
GAGCGGAGCGGGTTGGATCAGCTGAGCCGAACTCACCAAGATGACTAAAGTGGGCTTCCT
GCGTTTGTCCTATGAGAAGCAGGACACGCTCCTCAAGCTGCTCATCCTGTCCATGGCAGC
CGTCCTCTCCTTCTCCACCAGACTCTTTTCTGTTTTGAGATTCGAAAGCGTCATCCATGA
ATTTGACCCGTACTTTAACTACCGCACCACTCGTTTCCTGGCAGAAGAAGGATTTTATAA
GTTCCACAACTGGTTTGATGACCGGGCCTGGTACCCTCTGGGTCGCATTATCGGTGGCAC
CATTTACCCAGGGCTGATGATCACCTCGGCGCTGCTCTACCACGTCTTACACTTTTTCCA
CATCACCATCGACATCCGGAACGTCTGCGTGTTCTTGGCTCCCTTGTTCTCCTCCTTTAC
TGCCATCGTGACCTACCAC

consensusID : consensus_1580#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence 
                              [GAGACTCACAAGATCAATTAAAACTTTTAGCACGTTTCCCAACGGTTGGATCAGCTGAGCCGAACTCACCAAGATGACTAAAGTGGGCTTCCTGCGTTTGTCCTATGAGAAGCAGGACACGCTCCTCAAGCTGCTCATCCTGTCCATGGCAGCCGTCCTCTCCTTCTCCACCAGACTCTTTTCTGTTTTGAGATTCGAAAGCGTCACCCATGAATTTGACCCGTACTTTAACTACCGCACCACTCGTTTCCTGGCAGAAGAAGGATTTTATAAGTTCCACAACTGGTTTGATGACCGGGCCTGGTACCCTCTGGGTCGCATTATCGGTGGCACCATTTACCCAGGGCTGATGATCACCTCGGCGCTGCTCTACCACGTCTTACACTTTTTCCACATCACCATCGACATCCGGAACGTCTACGTGTTCTTGGC]

[+] EMBL CA589315             [GAGACTCACAAGATCAATTAAAACTTTTAGCACGTTTCCCAACGGTTGGATCAGCTGAGCCGAACTCACCAAGATGACTAAAGTGGGCTTCCTGCGTTTGTCCTATGAGAAGCAGGACACGCTCCTCAAGCTGCTCATCCTGTCCATGGCAGCCGTCCTCTCCTTCTCCACCAGACTCTTTTCTGTTTTGAGATTCGAAAGCGTCACCCATGAATTTGACCCGTACTTTAACTACCGCACCACTCGTTTCCTGGCAGAAGAAGGATTTTATAAGTTCCACAACTGGTTTGATGACCGGGCCTGGTACCCTCTGGGTCGCATTATCGGTGGCACCATTTACCCAGGGCTGATGATCACCTCGGCGCTGCTCTACCACGTCTTACACTTTTTCCACATCACCATCGACATCCGGAACGTCTACGTGTTCTTGGC]




>consensus_1580#1
GAGACTCACAAGATCAATTAAAACTTTTAGCACGTTTCCCAACGGTTGGATCAGCTGAGC
CGAACTCACCAAGATGACTAAAGTGGGCTTCCTGCGTTTGTCCTATGAGAAGCAGGACAC
GCTCCTCAAGCTGCTCATCCTGTCCATGGCAGCCGTCCTCTCCTTCTCCACCAGACTCTT
TTCTGTTTTGAGATTCGAAAGCGTCACCCATGAATTTGACCCGTACTTTAACTACCGCAC
CACTCGTTTCCTGGCAGAAGAAGGATTTTATAAGTTCCACAACTGGTTTGATGACCGGGC
CTGGTACCCTCTGGGTCGCATTATCGGTGGCACCATTTACCCAGGGCTGATGATCACCTC
GGCGCTGCTCTACCACGTCTTACACTTTTTCCACATCACCATCGACATCCGGAACGTCTA
CGTGTTCTTGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1580#0      ATCAGTAAAAGGAGCGGAGCGGGTGAGACTCACAAGATCAATTAACCCTAAAAGCAGAAG 60
consensus_1580#1      ------------------------GAGACTCACAAGATCAATTAAAACTTTTAGCA--CG 34
                                              *********************  **   ****   *

consensus_1580#0      GAGCGGAGCGGGTTGGATCAGCTGAGCCGAACTCACCAAGATGACTAAAGTGGGCTTCCT 120
consensus_1580#1      TTTCCCAACGG-TTGGATCAGCTGAGCCGAACTCACCAAGATGACTAAAGTGGGCTTCCT 93
                         *  * *** ************************************************

consensus_1580#0      GCGTTTGTCCTATGAGAAGCAGGACACGCTCCTCAAGCTGCTCATCCTGTCCATGGCAGC 180
consensus_1580#1      GCGTTTGTCCTATGAGAAGCAGGACACGCTCCTCAAGCTGCTCATCCTGTCCATGGCAGC 153
                      ************************************************************

consensus_1580#0      CGTCCTCTCCTTCTCCACCAGACTCTTTTCTGTTTTGAGATTCGAAAGCGTCATCCATGA 240
consensus_1580#1      CGTCCTCTCCTTCTCCACCAGACTCTTTTCTGTTTTGAGATTCGAAAGCGTCACCCATGA 213
                      ***************************************************** ******

consensus_1580#0      ATTTGACCCGTACTTTAACTACCGCACCACTCGTTTCCTGGCAGAAGAAGGATTTTATAA 300
consensus_1580#1      ATTTGACCCGTACTTTAACTACCGCACCACTCGTTTCCTGGCAGAAGAAGGATTTTATAA 273
                      ************************************************************

consensus_1580#0      GTTCCACAACTGGTTTGATGACCGGGCCTGGTACCCTCTGGGTCGCATTATCGGTGGCAC 360
consensus_1580#1      GTTCCACAACTGGTTTGATGACCGGGCCTGGTACCCTCTGGGTCGCATTATCGGTGGCAC 333
                      ************************************************************

consensus_1580#0      CATTTACCCAGGGCTGATGATCACCTCGGCGCTGCTCTACCACGTCTTACACTTTTTCCA 420
consensus_1580#1      CATTTACCCAGGGCTGATGATCACCTCGGCGCTGCTCTACCACGTCTTACACTTTTTCCA 393
                      ************************************************************

consensus_1580#0      CATCACCATCGACATCCGGAACGTCTGCGTGTTCTTGGCTCCCTTGTTCTCCTCCTTTAC 480
consensus_1580#1      CATCACCATCGACATCCGGAACGTCTACGTGTTCTTGGC--------------------- 432
                      ************************** ************                     

consensus_1580#0      TGCCATCGTGACCTACCAC 499
consensus_1580#1      -------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)