These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1580#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 499 fasta sequence [ATCAGTAAAAGGAGCGGAGCGGGTGAGACTCACAAGATCAATTAACCCTAAAAGCAGAAGGAGCGGAGCGGGTTGGATCAGCTGAGCCGAACTCACCAAGATGACTAAAGTGGGCTTCCTGCGTTTGTCCTATGAGAAGCAGGACACGCTCCTCAAGCTGCTCATCCTGTCCATGGCAGCCGTCCTCTCCTTCTCCACCAGACTCTTTTCTGTTTTGAGATTCGAAAGCGTCATCCATGAATTTGACCCGTACTTTAACTACCGCACCACTCGTTTCCTGGCAGAAGAAGGATTTTATAAGTTCCACAACTGGTTTGATGACCGGGCCTGGTACCCTCTGGGTCGCATTATCGGTGGCACCATTTACCCAGGGCTGATGATCACCTCGGCGCTGCTCTACCACGTCTTACACTTTTTCCACATCACCATCGACATCCGGAACGTCTGCGTGTTCTTGGCTCCCTTGTTCTCCTCCTTTACTGCCATCGTGACCTACCAC] [+] EMBL CA588576 [ATCAGTAAAAGGAGCGGAGCGGGTGAGACTCACAAGATCAATTAACCTTATAAGC ACGTTTCCCAAC GGTTGGATCAGCTGAGCCGAACTCACCAAGATGACTAAAGTGGGCTTCCTGCGTTTGTCCTATGAGAAGCAGGACACGCTCCTCAAGCTGCTCATCCTGTCCATGGCAGCCGTCCTCTCCTTCTCCACCAGACTCTTTTCTGTTTTGAGATTCGAAAGCGTCATCCATGAATTTGACCCGTACTTTAACTACCGCACCACTCGTTTCCTGGCAGAAGAAGGATTTTATAAGTTCCACAACTGGTTTGATGACCGGGCCTGGTACCCTCTGGATCGCATTATTTGTGGCACCATTTACCCAGGGCTGATGATCACCTCGGCGCTGCTCTACCACGTCTTACACTTTTTCCACATCACCATCGACATCCGGAACGTCTGCGTGTTCTTGGCT ] [+] EMBL CA845875 [ cCCCTAAAAGCAGAAGGAGCGGAGCGGGTTGGATCAGCTGAGCCTTACTCACCAAGATGACTAAAGTGGGCTTCCTGCGTTTGTCCTATGAGAAGCAGGACACGCTCCTCAAGCTGCTCATCCTGTCCATGGCAGCCGTCCTCTCCTTCTCCACCAGACTCTTTTCTGTTTTGAGATTCGAAAGCGTCATCCATGAATTTGACCCGTACTTTAACTACCGCACCACTCGTTTCCTGGCAGAAGAAGGATTTTATAAGTTCCACAACTGGTTTGATGACCGGGCCTGGTACCCTCTGGGTCGCATTATCGGTGGCACCATTTACCCAGGGCTGATGATCACCTCGGCGCTGCTCTACCACGTCTTACACTTTTTCCACATCACCATCGACATCCGGAACGTCTGCGTGTTCTTGGCTCCCTTGTTCTCCTCCTTTACTGCCATCGTGACCTACCAC] consensusID : consensus_1580#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [GAGACTCACAAGATCAATTAAAACTTTTAGCACGTTTCCCAACGGTTGGATCAGCTGAGCCGAACTCACCAAGATGACTAAAGTGGGCTTCCTGCGTTTGTCCTATGAGAAGCAGGACACGCTCCTCAAGCTGCTCATCCTGTCCATGGCAGCCGTCCTCTCCTTCTCCACCAGACTCTTTTCTGTTTTGAGATTCGAAAGCGTCACCCATGAATTTGACCCGTACTTTAACTACCGCACCACTCGTTTCCTGGCAGAAGAAGGATTTTATAAGTTCCACAACTGGTTTGATGACCGGGCCTGGTACCCTCTGGGTCGCATTATCGGTGGCACCATTTACCCAGGGCTGATGATCACCTCGGCGCTGCTCTACCACGTCTTACACTTTTTCCACATCACCATCGACATCCGGAACGTCTACGTGTTCTTGGC] [+] EMBL CA589315 [GAGACTCACAAGATCAATTAAAACTTTTAGCACGTTTCCCAACGGTTGGATCAGCTGAGCCGAACTCACCAAGATGACTAAAGTGGGCTTCCTGCGTTTGTCCTATGAGAAGCAGGACACGCTCCTCAAGCTGCTCATCCTGTCCATGGCAGCCGTCCTCTCCTTCTCCACCAGACTCTTTTCTGTTTTGAGATTCGAAAGCGTCACCCATGAATTTGACCCGTACTTTAACTACCGCACCACTCGTTTCCTGGCAGAAGAAGGATTTTATAAGTTCCACAACTGGTTTGATGACCGGGCCTGGTACCCTCTGGGTCGCATTATCGGTGGCACCATTTACCCAGGGCTGATGATCACCTCGGCGCTGCTCTACCACGTCTTACACTTTTTCCACATCACCATCGACATCCGGAACGTCTACGTGTTCTTGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1580#0 ATCAGTAAAAGGAGCGGAGCGGGTGAGACTCACAAGATCAATTAACCCTAAAAGCAGAAG 60 consensus_1580#1 ------------------------GAGACTCACAAGATCAATTAAAACTTTTAGCA--CG 34 ********************* ** **** * consensus_1580#0 GAGCGGAGCGGGTTGGATCAGCTGAGCCGAACTCACCAAGATGACTAAAGTGGGCTTCCT 120 consensus_1580#1 TTTCCCAACGG-TTGGATCAGCTGAGCCGAACTCACCAAGATGACTAAAGTGGGCTTCCT 93 * * *** ************************************************ consensus_1580#0 GCGTTTGTCCTATGAGAAGCAGGACACGCTCCTCAAGCTGCTCATCCTGTCCATGGCAGC 180 consensus_1580#1 GCGTTTGTCCTATGAGAAGCAGGACACGCTCCTCAAGCTGCTCATCCTGTCCATGGCAGC 153 ************************************************************ consensus_1580#0 CGTCCTCTCCTTCTCCACCAGACTCTTTTCTGTTTTGAGATTCGAAAGCGTCATCCATGA 240 consensus_1580#1 CGTCCTCTCCTTCTCCACCAGACTCTTTTCTGTTTTGAGATTCGAAAGCGTCACCCATGA 213 ***************************************************** ****** consensus_1580#0 ATTTGACCCGTACTTTAACTACCGCACCACTCGTTTCCTGGCAGAAGAAGGATTTTATAA 300 consensus_1580#1 ATTTGACCCGTACTTTAACTACCGCACCACTCGTTTCCTGGCAGAAGAAGGATTTTATAA 273 ************************************************************ consensus_1580#0 GTTCCACAACTGGTTTGATGACCGGGCCTGGTACCCTCTGGGTCGCATTATCGGTGGCAC 360 consensus_1580#1 GTTCCACAACTGGTTTGATGACCGGGCCTGGTACCCTCTGGGTCGCATTATCGGTGGCAC 333 ************************************************************ consensus_1580#0 CATTTACCCAGGGCTGATGATCACCTCGGCGCTGCTCTACCACGTCTTACACTTTTTCCA 420 consensus_1580#1 CATTTACCCAGGGCTGATGATCACCTCGGCGCTGCTCTACCACGTCTTACACTTTTTCCA 393 ************************************************************ consensus_1580#0 CATCACCATCGACATCCGGAACGTCTGCGTGTTCTTGGCTCCCTTGTTCTCCTCCTTTAC 480 consensus_1580#1 CATCACCATCGACATCCGGAACGTCTACGTGTTCTTGGC--------------------- 432 ************************** ************ consensus_1580#0 TGCCATCGTGACCTACCAC 499 consensus_1580#1 ------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |