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Takifugu rubripes
cluster # 1587 cluster # 1587       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1587#0 length = 522 sequences # 1  
 consensus_1587#1 length = 361 sequences # 2  
consensusID : consensus_1587#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence 
                              [ATGCCCCAGCCTTTAATATCTTTCATGTGTTTAAGCAACAGTGAATATGTGCCTTAACAAAAAAAAAAAATCTTAGGCAGCATGTTCATGAAACAATGACACCTCTTTATTTTGAAACATTTCAGTGTGAGCTCTTTATTTTCTGACACACGTTCACATTCTTGGAATGTAACACCACCACGACAGAAATGGGCCTTTATTTACAGCCACAGTTGTACCTCATGTTCCCCACAGAAGAAAAAAAAGGACAGGAAGTACTGAGAAGAGTGATTTGGCTGATGCATCAGTTCCTTCTTGTAAACGTTTTTTGCGATAGATTTAATCCGATAGTAAAATGGAAAAGACAAACAGGAACGTCGTGTTGCTTTTACATCAACAATGTAAAATCAAACACGGGAAACGAACAAAGGCCTAAACTGCAGCAGCGTGCTGTGAGGTATGGAAAAAACATGAACCCTACATGTTAAATAAATATTAACATTAAATTCCGCTGGGGTTAGTTGGCACCCTCGGTGTTCAGCC]

[+] EMBL CA331746             [ATGCCCCAGCCTTTAATATCTTTCATGTGTTTAAGCAACAGTGAATATGTGCCTTAACAAAAAAAAAAAATCTTAGGCAGCATGTTCATGAAACAATGACACCTCTTTATTTTGAAACATTTCAGTGTGAGCTCTTTATTTTCTGACACACGTTCACATTCTTGGAATGTAACACCACCACGACAGAAATGGGCCTTTATTTACAGCCACAGTTGTACCTCATGTTCCCCACAGAAGAAAAAAAAGGACAGGAAGTACTGAGAAGAGTGATTTGGCTGATGCATCAGTTCCTTCTTGTAAACGTTTTTTGCGATAGATTTAATCCGATAGTAAAATGGAAAAGACAAACAGGAACGTCGTGTTGCTTTTACATCAACAATGTAAAATCAAACACGGGAAACGAACAAAGGCCTAAACTGCAGCAGCGTGCTGTGAGGTATGGAAAAAACATGAACCCTACATGTTAAATAAATATTAACATTAAATTCCGCTGGGGTTAGTTGGCACCCTCGGTGTTCAGCC]




>consensus_1587#0
ATGCCCCAGCCTTTAATATCTTTCATGTGTTTAAGCAACAGTGAATATGTGCCTTAACAA
AAAAAAAAAATCTTAGGCAGCATGTTCATGAAACAATGACACCTCTTTATTTTGAAACAT
TTCAGTGTGAGCTCTTTATTTTCTGACACACGTTCACATTCTTGGAATGTAACACCACCA
CGACAGAAATGGGCCTTTATTTACAGCCACAGTTGTACCTCATGTTCCCCACAGAAGAAA
AAAAAGGACAGGAAGTACTGAGAAGAGTGATTTGGCTGATGCATCAGTTCCTTCTTGTAA
ACGTTTTTTGCGATAGATTTAATCCGATAGTAAAATGGAAAAGACAAACAGGAACGTCGT
GTTGCTTTTACATCAACAATGTAAAATCAAACACGGGAAACGAACAAAGGCCTAAACTGC
AGCAGCGTGCTGTGAGGTATGGAAAAAACATGAACCCTACATGTTAAATAAATATTAACA
TTAAATTCCGCTGGGGTTAGTTGGCACCCTCGGTGTTCAGCC

consensusID : consensus_1587#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 361
fasta sequence 
                              [CAAAACTTGGGTCCCGGGCCCCCCCCCAAGTTTTTTTTTTTTTTTTTTTTCATGAAACAATGACACCTCTTTATTTTGAAACATTTCAGTGTGAGCTCTTTATTTTCTGACACACGTTCACATTCTTGGAATGTAACACCACCACGACAGAAATGGGCCTTTATTTACAGCCACAGTTGTACCTCATGTTCCCCACAGAAGAAAAAAGAAAAGGACAGGAAGTACTGAGAAGAGTGATTTGGCTGATGCATCAGTTCCTTCTTGTAAACGTAGTTTGCGATAGATTTCTCGTGCCGAATTCGGCACGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA]

[-] EMBL FR0057911            [CAAAACTTGGGTCCCGGGCCCCCCCCCAAGTTTTTTTTTTTTTTTTTTTTCATGAAACAATGACACCTCTTTATTTTGAAACATTTCAGTGTGAGCTCTTTATTTTCTGACACACGTTCACATTCTTGGAATGTAACACCACCACGACAGAAATGGGCCTTTATTTACAGCCACAGTTGTCCCTCATGTTCCCCACAGAAGAAAAAAGAAAAGGA                                                                                                                                                  ]
[+] EMBL FR0057665            [                                                                                               CTCTTTATTTTCTGACACACGTTCACATTCTTGGAATGTAACACCACCACGACAGAAATGGGCCTTTATTTACAGCCACAGTTGTACCTCATGTTCCCCACAGAAGAAAAAAGAAAAGGACAGGAAGTACTGAGAAGAGTGATTTGGCTGATGCATCAGTTCCTTCTTGTAAACGTAGTTTGCGATAGATTTCTCGTGCCGAATTCGGCACGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA]




>consensus_1587#1
CAAAACTTGGGTCCCGGGCCCCCCCCCAAGTTTTTTTTTTTTTTTTTTTTCATGAAACAA
TGACACCTCTTTATTTTGAAACATTTCAGTGTGAGCTCTTTATTTTCTGACACACGTTCA
CATTCTTGGAATGTAACACCACCACGACAGAAATGGGCCTTTATTTACAGCCACAGTTGT
ACCTCATGTTCCCCACAGAAGAAAAAAGAAAAGGACAGGAAGTACTGAGAAGAGTGATTT
GGCTGATGCATCAGTTCCTTCTTGTAAACGTAGTTTGCGATAGATTTCTCGTGCCGAATT
CGGCACGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1587#0      ATGCCCCAGCCTTTAATATCTTTCATGTGTTTAAGCAACAGTGAATATGTGCCTTAACAA 60
consensus_1587#1      ---------------------------------CAAAACTTGGGTCCCGGGCCCCCCCCC 27
                                                          ***   *     * ***    *  

consensus_1587#0      AAAAAAAAAATCTTAGGCAGCATGTTCATGAAACAATGACACCTCTTTATTTTGAAACAT 120
consensus_1587#1      AAGTTT---TTTTTTTTTTTTTTTTTCATGAAACAATGACACCTCTTTATTTTGAAACAT 84
                      **        * **        * ************************************

consensus_1587#0      TTCAGTGTGAGCTCTTTATTTTCTGACACACGTTCACATTCTTGGAATGTAACACCACCA 180
consensus_1587#1      TTCAGTGTGAGCTCTTTATTTTCTGACACACGTTCACATTCTTGGAATGTAACACCACCA 144
                      ************************************************************

consensus_1587#0      CGACAGAAATGGGCCTTTATTTACAGCCACAGTTGTACCTCATGTTCCCCACAGAAGAAA 240
consensus_1587#1      CGACAGAAATGGGCCTTTATTTACAGCCACAGTTGTACCTCATGTTCCCCACAGAAGAAA 204
                      ************************************************************

consensus_1587#0      AAA---AAGGACAGGAAGTACTGAGAAGAGTGATTTGGCTGATGCATCAGTTCCTTCTTG 297
consensus_1587#1      AAAGAAAAGGACAGGAAGTACTGAGAAGAGTGATTTGGCTGATGCATCAGTTCCTTCTTG 264
                      ***   ******************************************************

consensus_1587#0      TAAACGTTTTTTGCGATAGATTTAATCCGATAGTAAAATGGAAAAGACAAACAGGAACGT 357
consensus_1587#1      TAAACGTAGTTTGCGATAGATTT---CTCGTGCCGAATTCGGCACGAGGAGAGAGAGAG- 320
                      *******  **************   *   *    ** * *  * **  *    **  * 

consensus_1587#0      CGTGTTGCTTTTACATCAACAATGTAAAATCAAACACGGGAAACGAACAAAGGCCTAAAC 417
consensus_1587#1      ------------AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA------- 361
                                  * *   * *  *  * *   *    * ** *   * * **        

consensus_1587#0      TGCAGCAGCGTGCTGTGAGGTATGGAAAAAACATGAACCCTACATGTTAAATAAATATTA 477
consensus_1587#1      ------------------------------------------------------------
                                                                                  

consensus_1587#0      ACATTAAATTCCGCTGGGGTTAGTTGGCACCCTCGGTGTTCAGCC 522
consensus_1587#1      ---------------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)