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Takifugu rubripes
cluster # 1607 cluster # 1607       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1607#0 length = 725 sequences # 1  
consensus_1607#1 length = 451 sequences # 2  

consensusID : consensus_1607#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 725
fasta sequence
                              [GTCTATAAGGAACTGCTTGTGTGGCACAACAAGATGGCCTGTTACTTCACGGCAGTCGAAATTCCACGTCGCGAACTGGTTTAAAGTGAGCATCCGATCGCTCGGTTCGGTCCCAGTTTAAACGTTTCCACTTCAGTGTTTATGGAGGGACGCTGAAACTTTTGAGGCCAACAAGATTCAAACTTAGCTGTTGGGAAGACTTGTGGATTGTTTCCAGACAGATTTGGCCTTAACAGTTTCTCTGACATCTAAAGGTTGCGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCACACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGTTTGAAAACGGAGGTCGTGGGGCTGGAGTGTGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCTGGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTATGGGGCGGAAACGGAGATCATGACGGAGGAGAGGCGCGGATTAGAGCTGGAAATCCACGGCACCGACTTAAAGATCCAGGGACTCGGCGGCGACCTCGGGACGGTGACCTGCGTGGACGCCATCGTGGCGGAGAGCGACCACGACTACATCAAGGTGGAGCACGGCGACATGCAGTGCTTCACCGGGGCGGAGATCAAGACGGCGACGGGCGAGACGCTGCTCGGGGAGGTGCTGCTCAAGACGGAGAGCG]

[+] EMBL CA588662             [GTCTATAAGGAACTGCTTGTGTGGCACAACAAGATGGCCTGTTACTTCACGGCAGTCGAAATTCCACGTCGCGAACTGGTTTAAAGTGAGCATCCGATCGCTCGGTTCGGTCCCAGTTTAAACGTTTCCACTTCAGTGTTTATGGAGGGACGCTGAAACTTTTGAGGCCAACAAGATTCAAACTTAGCTGTTGGGAAGACTTGTGGATTGTTTCCAGACAGATTTGGCCTTAACAGTTTCTCTGACATCTAAAGGTTGCGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCACACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGTTTGAAAACGGAGGTCGTGGGGCTGGAGTGTGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCTGGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTATGGGGCGGAAACGGAGATCATGACGGAGGAGAGGCGCGGATTAGAGCTGGAAATCCACGGCACCGACTTAAAGATCCAGGGACTCGGCGGCGACCTCGGGACGGTGACCTGCGTGGACGCCATCGTGGCGGAGAGCGACCACGACTACATCAAGGTGGAGCACGGCGACATGCAGTGCTTCACCGGGGCGGAGATCAAGACGGCGACGGGCGAGACGCTGCTCGGGGAGGTGCTGCTCAAGACGGAGAGCG]


>consensus_1607#0 GTCTATAAGGAACTGCTTGTGTGGCACAACAAGATGGCCTGTTACTTCACGGCAGTCGAA ATTCCACGTCGCGAACTGGTTTAAAGTGAGCATCCGATCGCTCGGTTCGGTCCCAGTTTA AACGTTTCCACTTCAGTGTTTATGGAGGGACGCTGAAACTTTTGAGGCCAACAAGATTCA AACTTAGCTGTTGGGAAGACTTGTGGATTGTTTCCAGACAGATTTGGCCTTAACAGTTTC TCTGACATCTAAAGGTTGCGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCACACAA AGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGTTTGAAAACGGAGGT CGTGGGGCTGGAGTGTGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCTGGCCT TGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTATGGGGC GGAAACGGAGATCATGACGGAGGAGAGGCGCGGATTAGAGCTGGAAATCCACGGCACCGA CTTAAAGATCCAGGGACTCGGCGGCGACCTCGGGACGGTGACCTGCGTGGACGCCATCGT GGCGGAGAGCGACCACGACTACATCAAGGTGGAGCACGGCGACATGCAGTGCTTCACCGG GGCGGAGATCAAGACGGCGACGGGCGAGACGCTGCTCGGGGAGGTGCTGCTCAAGACGGA GAGCG



consensusID : consensus_1607#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 451
fasta sequence
                              [CACACCGAGAGGAAAGGACACCCAGCGGGCTGACGAACCCCCAACACAGCCTACAAAGCCGCTCTGCAGCGAGCCCGAGACCGTCCTGTTTCTCCGCCATCTGCCATTTTATTAAAGGAGCGTAACGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCACACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGCAGGAAAACGGAGGTCGTGGGGCTGGAGTGCGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCTGGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTATGGGGCGGAAACGGAGATCATGACGGAGGAGAAGCGCGGATTAGAGCTGGAAATCCACGGCACCGACTTAAAGATCCAGGGACTCGGCGGCGACCTCGGGACGGTGACCT]

[+] EMBL CA332892             [CACACCGAGAGGAAAGGACACCCAGCGGGCTGACGAACCCCCAACACAGCCTACAAAGCCGCTCTGCAGCGAGCCCGAAACCGTCCTGTTTCTCCGCCATCTGCCATTTTATTAAAGGAGCGTAACGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCACACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGCAGGAAAACGGAGGTCGTGGGGCTGGAGTGTGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCTGGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTATGGGGCGGAAACGGAGATCATGACGGAGGAGAAGCGCGGATTAGAGCTGGAAATCCACGGCACCGACTTAAAGATCCAGGGACTCGGCGGCGACCTCGGGACGGTGACCT]
[+] EMBL FR0058421            [                                                                 GCAGCGAGCCCGAGACCGTCCTGTTTCTCCGCCATCTGCCATTTTATTAAAGGAGCGTAACGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCACACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGCAGGAAAACGGAGGTCGTGGGGCTGGAGTGCGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCTGGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTATGGGGCGGAAACGGAGA                                                                                             ]


>consensus_1607#1 CACACCGAGAGGAAAGGACACCCAGCGGGCTGACGAACCCCCAACACAGCCTACAAAGCC GCTCTGCAGCGAGCCCGAGACCGTCCTGTTTCTCCGCCATCTGCCATTTTATTAAAGGAG CGTAACGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCACACAAAGCCCGCTTTGTC GCCCCCGATTCCCCCCTTGTGTCTTCATCCGGCAGGAAAACGGAGGTCGTGGGGCTGGAG TGCGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCTGGCCTTGACACGCTTGGG TCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTATGGGGCGGAAACGGAGATC ATGACGGAGGAGAAGCGCGGATTAGAGCTGGAAATCCACGGCACCGACTTAAAGATCCAG GGACTCGGCGGCGACCTCGGGACGGTGACCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1607#0      GTCTATAAGGAACTGCTTGTGTGGCACAACAAGATGGCCTGTTACTTCACGGCAGTCGAA 60
consensus_1607#1      ------------------------------------------------------------
                                                                                  

consensus_1607#0      ATTCCACGTCGCGAACTGGTTTAAAGTGAGCATCCGATCGCTCGGTTCGGTCCCAGTTTA 120
consensus_1607#1      ------------------------------------------------------------
                                                                                  

consensus_1607#0      AACGTTTCCACTTCAGTGTTTATGGAGGGACGCTGAAACTTTTGAGGCCAACAAGATTCA 180
consensus_1607#1      ------------------CACACCGAGAGGAAAGGACACCCAGCGGGCTGACGAACCCCC 42
                                           *  *** *     ** **      ***  ** *    * 

consensus_1607#0      AACTTAGCTGTTGGGAAGACTTGTGGATTGTTTCCAGACAGATTTGGCCTT--AACAGTT 238
consensus_1607#1      AACACAGCCTACAAAGCCGCTCTGCAGCGAGCCCGAGACCGTCCTGTTTCTCCGCCATCT 102
                      ***  ***           **            * **** *   **    *    **  *

consensus_1607#0      TCTCTGACATCTAAAG---GTTGCGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCA 295
consensus_1607#1      GCCATTTTATTAAAGGAGCGTAACGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCA 162
                       *  *   **  ** *   **  *************************************

consensus_1607#0      CACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGTTTGAAAACG 355
consensus_1607#1      CACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGCAGGAAAACG 222
                      **************************************************   *******

consensus_1607#0      GAGGTCGTGGGGCTGGAGTGTGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCT 415
consensus_1607#1      GAGGTCGTGGGGCTGGAGTGCGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCT 282
                      ******************** ***************************************

consensus_1607#0      GGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTAT 475
consensus_1607#1      GGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTAT 342
                      ************************************************************

consensus_1607#0      GGGGCGGAAACGGAGATCATGACGGAGGAGAGGCGCGGATTAGAGCTGGAAATCCACGGC 535
consensus_1607#1      GGGGCGGAAACGGAGATCATGACGGAGGAGAAGCGCGGATTAGAGCTGGAAATCCACGGC 402
                      ******************************* ****************************

consensus_1607#0      ACCGACTTAAAGATCCAGGGACTCGGCGGCGACCTCGGGACGGTGACCTGCGTGGACGCC 595
consensus_1607#1      ACCGACTTAAAGATCCAGGGACTCGGCGGCGACCTCGGGACGGTGACCT----------- 451
                      *************************************************           

consensus_1607#0      ATCGTGGCGGAGAGCGACCACGACTACATCAAGGTGGAGCACGGCGACATGCAGTGCTTC 655
consensus_1607#1      ------------------------------------------------------------
                                                                                  

consensus_1607#0      ACCGGGGCGGAGATCAAGACGGCGACGGGCGAGACGCTGCTCGGGGAGGTGCTGCTCAAG 715
consensus_1607#1      ------------------------------------------------------------
                                                                                  

consensus_1607#0      ACGGAGAGCG 725
consensus_1607#1      ----------
                                




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)