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Takifugu rubripes
cluster # 161 cluster # 161       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_161#0 length = 447 sequences # 1  
 consensus_161#1 length = 410 sequences # 1  
consensusID : consensus_161#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence 
                              [ATTGTTTTAACTTTAAAATACCTCTTCTTGTTTTGGCTTCGGATGTACACCAAGGGAACTAACGTGCACGTTTATAGTACATGACAAACATAATCTTTTTTAACATTTCAACATCCATCCTCACATTTTGAGGTTGCCAATTTTGTCTCAAGGTTAGCCAGCGCTAGGGCTAACGTTAGCCGATTAAAGCTAAACTAGTGGAGCTAACGGAAACTTGGCACTAAATATTACTTCTTACGTTTGGGTGGGTTATTAGAAATCGACTCAACCAGAAGAATAGCATGGCCGAAGCCGACAAGTTAAACATCGACTCTATTATACAGCGTCTGCTTGAAGTGAAAGGCTCCAGACCTGGAAAAAATGTTCAGCTGACAGAGAATGAAATCCGTGGTCTCTGCCTCAAATCCAGGGAGAACTTTCTTAACCCAACCGATTCTGCTTTGAACT]

[+] EMBL FR0061540            [ATTGTTTTAACTTTAAAATACCTCTTCTTGTTTTGGCTTCGGATGTACACCAAGGGAACTAACGTGCACGTTTATAGTACATGACAAACATAATCTTTTTTAACATTTCAACATCCATCCTCACATTTTGAGGTTGCCAATTTTGTCTCAAGGTTAGCCAGCGCTAGGGCTAACGTTAGCCGATTAAAGCTAAACTAGTGGAGCTAACGGAAACTTGGCACTAAATATTACTTCTTACGTTTGGGTGGGTTATTAGAAATCGACTCAACCAGAAGAATAGCATGGCCGAAGCCGACAAGTTAAACATCGACTCTATTATACAGCGTCTGCTTGAAGTGAAAGGCTCCAGACCTGGAAAAAATGTTCAGCTGACAGAGAATGAAATCCGTGGTCTCTGCCTCAAATCCAGGGAGAACTTTCTTAACCCAACCGATTCTGCTTTGAACT]




>consensus_161#0
ATTGTTTTAACTTTAAAATACCTCTTCTTGTTTTGGCTTCGGATGTACACCAAGGGAACT
AACGTGCACGTTTATAGTACATGACAAACATAATCTTTTTTAACATTTCAACATCCATCC
TCACATTTTGAGGTTGCCAATTTTGTCTCAAGGTTAGCCAGCGCTAGGGCTAACGTTAGC
CGATTAAAGCTAAACTAGTGGAGCTAACGGAAACTTGGCACTAAATATTACTTCTTACGT
TTGGGTGGGTTATTAGAAATCGACTCAACCAGAAGAATAGCATGGCCGAAGCCGACAAGT
TAAACATCGACTCTATTATACAGCGTCTGCTTGAAGTGAAAGGCTCCAGACCTGGAAAAA
ATGTTCAGCTGACAGAGAATGAAATCCGTGGTCTCTGCCTCAAATCCAGGGAGAACTTTC
TTAACCCAACCGATTCTGCTTTGAACT

consensusID : consensus_161#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence 
                              [TGTTTTGGCTTCGGATGTACACCAAGTTAACTAACGTGCACGTTTATAGTACATGACAAACATAATCTTTTTTAACATTTCAACATCCATCCTCACATTTTGAGGTTGCCAATTTTGTCTCAAGAAATCGACTCAACCAGAAGAATAGCATGGCCGAAGCCGACAAGTTAAACATCGACTCTATTATACAGCGTCTGCTGGAAGTGAAAGGCTCCAGACCTGGAAAAAATGTTCAGCTGACAGAGAATGAGATCCGTGGTCTCTGCCTCAAATCCAGGGAGATCTTCCTCAGCCAACCGATTCTGCTTGAACTGGAGGCACCCCTTAAGATTTGGGGGATGTTCACGGGCAGGACTACGATCTGCTGAGGCTTTTTGGAATATGGAGGCTTCCCACCAGAGAGCAACTAC]

[+] EMBL FR0059686            [TGTTTTGGCTTCGGATGTACACCAAGTTAACTAACGTGCACGTTTATAGTACATGACAAACATAATCTTTTTTAACATTTCAACATCCATCCTCACATTTTGAGGTTGCCAATTTTGTCTCAAGAAATCGACTCAACCAGAAGAATAGCATGGCCGAAGCCGACAAGTTAAACATCGACTCTATTATACAGCGTCTGCTGGAAGTGAAAGGCTCCAGACCTGGAAAAAATGTTCAGCTGACAGAGAATGAGATCCGTGGTCTCTGCCTCAAATCCAGGGAGATCTTCCTCAGCCAACCGATTCTGCTTGAACTGGAGGCACCCCTTAAGATTTGGGGGATGTTCACGGGCAGGACTACGATCTGCTGAGGCTTTTTGGAATATGGAGGCTTCCCACCAGAGAGCAACTAC]




>consensus_161#1
TGTTTTGGCTTCGGATGTACACCAAGTTAACTAACGTGCACGTTTATAGTACATGACAAA
CATAATCTTTTTTAACATTTCAACATCCATCCTCACATTTTGAGGTTGCCAATTTTGTCT
CAAGAAATCGACTCAACCAGAAGAATAGCATGGCCGAAGCCGACAAGTTAAACATCGACT
CTATTATACAGCGTCTGCTGGAAGTGAAAGGCTCCAGACCTGGAAAAAATGTTCAGCTGA
CAGAGAATGAGATCCGTGGTCTCTGCCTCAAATCCAGGGAGATCTTCCTCAGCCAACCGA
TTCTGCTTGAACTGGAGGCACCCCTTAAGATTTGGGGGATGTTCACGGGCAGGACTACGA
TCTGCTGAGGCTTTTTGGAATATGGAGGCTTCCCACCAGAGAGCAACTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_161#0      ATTGTTTTAACTTTAAAATACCTCTTCTTGTTTTGGCTTCGGATGTACACCAAGGGAACT 60
consensus_161#1      ----------------------------TGTTTTGGCTTCGGATGTACACCAAGTTAACT 32
                                                 **************************  ****

consensus_161#0      AACGTGCACGTTTATAGTACATGACAAACATAATCTTTTTTAACATTTCAACATCCATCC 120
consensus_161#1      AACGTGCACGTTTATAGTACATGACAAACATAATCTTTTTTAACATTTCAACATCCATCC 92
                     ************************************************************

consensus_161#0      TCACATTTTGAGGTTGCCAATTTTGTCTCAAGGTTAGCCAGCGCTAGGGCTAACGTTAGC 180
consensus_161#1      TCACATTTTGAGGTTGCCAATTTTGTCTCAAG---------------------------- 124
                     ********************************                            

consensus_161#0      CGATTAAAGCTAAACTAGTGGAGCTAACGGAAACTTGGCACTAAATATTACTTCTTACGT 240
consensus_161#1      ------------------------------------------------------------
                                                                                 

consensus_161#0      TTGGGTGGGTTATTAGAAATCGACTCAACCAGAAGAATAGCATGGCCGAAGCCGACAAGT 300
consensus_161#1      ----------------AAATCGACTCAACCAGAAGAATAGCATGGCCGAAGCCGACAAGT 168
                                     ********************************************

consensus_161#0      TAAACATCGACTCTATTATACAGCGTCTGCTTGAAGTGAAAGGCTCCAGACCTGGAAAAA 360
consensus_161#1      TAAACATCGACTCTATTATACAGCGTCTGCTGGAAGTGAAAGGCTCCAGACCTGGAAAAA 228
                     ******************************* ****************************

consensus_161#0      ATGTTCAGCTGACAGAGAATGAAATCCGTGGTCTCTGCCTCAAATCCAGGGAGAACTTTC 420
consensus_161#1      ATGTTCAGCTGACAGAGAATGAGATCCGTGGTCTCTGCCTCAAATCCAGGGAGATCTTCC 288
                     ********************** ******************************* *** *

consensus_161#0      TTAACCCAACCGATTCTGCTTTGAACT--------------------------------- 447
consensus_161#1      TCAGCC-AACCGATTCTGCTT-GAACTGGAGGCACCCCTTAAGATTTGGGGGATGTTCAC 346
                     * * ** ************** *****                                 

consensus_161#0      ------------------------------------------------------------
consensus_161#1      GGGCAGGACTACGATCTGCTGAGGCTTTTTGGAATATGGAGGCTTCCCACCAGAGAGCAA 406
                                                                                 

consensus_161#0      ----
consensus_161#1      CTAC 410


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)