These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1610#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 786 fasta sequence [CTTAGGAGCAGGNGNTCTGTCTGGNTCACACGACCAACTTCCTTATAGGAGCTAGCCGAGCAGCTATTAGCGCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAAGCGGGTCGTAACCGAAGCGGGGCGTAACCGAAGCGGGTCGTGACCGAACCTGTCGTCTAGGACCAGGACCCGACCGTCGCCATGGCCGTCAGAGCCTCGTTTGAGAAGAACAACGAGATCGGCTGCTTCGCCAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGCGGCTCCGAGAACTTCTACAGCGTGTTTGAAGGCGAGCTAGCAGAGACCGGCCCAGTGGCCCACGCCTCCATCGCAGGCTGGCGCATCATCGGCCGCATGTGTGTGGGGAACCGCCACGGCCTGTTGGTGCCCAACAACACGACGGACCAGGAGCTGCAGCACATCAGGAACTGTCTCCCCGACAACGTCCGGATCCAGAGGGTGGAGGAGCGACTGTCCGCCCTCGGGAACGTCATCGCCTGCAACGACTACGTGGCGCTGGTCCACACCGACCTGGACAGGGAAACGGAGGAGATCCTGGCTGACACCCTGAAGGTGGAGGTTTTCCGTCAGACGGTGGCGGAGCAGGTCCTGGTCGGCTCTTACTGCGCCTTCAGCAACCAGGGAGGCCTCGTCCACCCAAAGACGTCCATCGAGGACCAGGACGAGCTGTCCTCGCTCCTGCAGGTCCCCCTGGTGGCGGGGACGGTGAACCGGGGGAGCGAGGTGATAACGGCG] [+] EMBL CA588645 [CTTAGGAGCAGGNGNTCTGTCTGGNTCACACGACCAACTTCCTTATAGGAGCTAGCCGAGCAGCTATTAGCGCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAAGCGGGTCGTAACCGAAGCGGGTCGTAACCGAAGCGGGTCGTGACCGAACCTGTCGTCTAGGACCAGGACCCGACCGTCGCCATGGCCGTCAGAGCCTCGTTTGAGAAGAACAACGAGATCGGCTGCTTCGCCAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGCGGCTCCGAGAACTTCTACAGCGTGTTTGAAGGCGAGCTAGCAGAGACCGTCCCAGTGGTCCACGCCTCCATCGCAGGCTGTCGCATCATCGGCCGCATGTGTGTGGGGAACCGCCACGGCCTGTTGGTGCCCAACAACACGACGGACCAGGAGCTGCAGCACATCAGGAACTGTCTCCCCGACAACGTCCGGATCCAGAGGGTGGAGGAGCGACTGTCCGCCCTCGGGAACGTCATCGCCTGCAACGACTACGTGGCGCTGGTCCACACCGACCTGGACAGGGAAACGGAGGAGATCCTGGCTGACACCCTGAAGGTGGAGGTTTTCCGTCAGACGGTGGCGGAGCAGGTCCTGGTCGGCTCTTACTGCGCCTTCAGCAACCAGGGAGGCCTCGTCCACCCAAAGACGTCCATCGAGGACCAGGACGAGCTGTCCTCGCTCCTGCAGGTCCCCCTGGTGGCGGGGACGGTGAACCGGGGGAGCGAGGTGATAACGGCG] [+] EMBL FR0062843 [ TCGTAACCGAAGCGGGGCGTAACCGAAGCGGGTCGTGACCGAACCTGTCGTCTAGGACCAGGACCCGACCGTCGCCATGGCCGTCAGAGCCTCGTTTGAGAAGAACAACGAGATCGGCTGCTTCGCCAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGCGGCTCCGAGAACTTCTACAGCGTGTTTGAAGGCGAGCTAGCCGAGACCGGCCCAGTGGCCCACGCCTTCATCGCAGGCTGGCGCATCATCGGCCGCAT ] consensusID : consensus_1610#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [CTTATATTGAATGTTTGTTGTATTGGCGCGCACGTGGTCACCTTCAGCGCGTGAGCAGAGGTGTTCTGTCTGGTTCACACGACCAACTTGTGCATCGTAGCTAGCCGAGCAGCTATTAGCGCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAAGCGGGTCGTAACCGAAGCGGGTCGTGACCGATCCTGTCGTCTAGGACCAGGACCCGACCGTCGCCATGGCCGTCAGAGCCTCGTTTGGGAAGAACAACGAGATCGGCTGCTTCGCCAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGGGGGTCCG] [+] EMBL FR0057481 [CTTATATTGAATGTTTGTTGTATTGGCGCGCACGTGGTCACCTTCAGCGCGTGAGCAGAGGTGTTCTGTCTGGTTCACACGACCAACTTGTGCATCGTAGCTAGCCGAGCAGCTATTAGCGCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAAGCGGGTCGTAACCGAAGCGGGTCGTGACCGATCCTGTCGTCTAGGACCAGGACCCGACCGTCGCCATGGCCGTCAGAGCCTCGTTTGGGAAGAACAACGAGATCGGCTGCTTCGCCAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGGGGGTCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1610#0 -------------------------------------------------CTTAGGAGCAG 11 consensus_1610#1 CTTATATTGAATGTTTGTTGTATTGGCGCGCACGTGGTCACCTTCAGCGCGTGAGCAGAG 60 * * * ** consensus_1610#0 GNGNTCTGTCTGGNTCACACGACCAACTTCCTTATAGGAGCTAGCCGAGCAGCTATTAGC 71 consensus_1610#1 GTGTTCTGTCTGGTTCACACGACCAACTTGTGCATCGTAGCTAGCCGAGCAGCTATTAGC 120 * * ********* *************** ** * ********************** consensus_1610#0 GCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAAGCGGGTCGTAA 131 consensus_1610#1 GCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAAGCGGGTCGTAA 180 ************************************************************ consensus_1610#0 CCGAAGCGGGGCGTAACCGAAGCGGGTCGTGACCGAACCTGTCGTCTAGGACCAGGACCC 191 consensus_1610#1 ----------------CCGAAGCGGGTCGTGACCGATCCTGTCGTCTAGGACCAGGACCC 224 ******************** *********************** consensus_1610#0 GACCGTCGCCATGGCCGTCAGAGCCTCGTTTGAGAAGAACAACGAGATCGGCTGCTTCGC 251 consensus_1610#1 GACCGTCGCCATGGCCGTCAGAGCCTCGTTTGGGAAGAACAACGAGATCGGCTGCTTCGC 284 ******************************** *************************** consensus_1610#0 CAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGCGGCTCCGAGAACTTCTACAGCGT 311 consensus_1610#1 CAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGGGGGTCCG---------------- 328 ************************************ ** **** consensus_1610#0 GTTTGAAGGCGAGCTAGCAGAGACCGGCCCAGTGGCCCACGCCTCCATCGCAGGCTGGCG 371 consensus_1610#1 ------------------------------------------------------------ consensus_1610#0 CATCATCGGCCGCATGTGTGTGGGGAACCGCCACGGCCTGTTGGTGCCCAACAACACGAC 431 consensus_1610#1 ------------------------------------------------------------ consensus_1610#0 GGACCAGGAGCTGCAGCACATCAGGAACTGTCTCCCCGACAACGTCCGGATCCAGAGGGT 491 consensus_1610#1 ------------------------------------------------------------ consensus_1610#0 GGAGGAGCGACTGTCCGCCCTCGGGAACGTCATCGCCTGCAACGACTACGTGGCGCTGGT 551 consensus_1610#1 ------------------------------------------------------------ consensus_1610#0 CCACACCGACCTGGACAGGGAAACGGAGGAGATCCTGGCTGACACCCTGAAGGTGGAGGT 611 consensus_1610#1 ------------------------------------------------------------ consensus_1610#0 TTTCCGTCAGACGGTGGCGGAGCAGGTCCTGGTCGGCTCTTACTGCGCCTTCAGCAACCA 671 consensus_1610#1 ------------------------------------------------------------ consensus_1610#0 GGGAGGCCTCGTCCACCCAAAGACGTCCATCGAGGACCAGGACGAGCTGTCCTCGCTCCT 731 consensus_1610#1 ------------------------------------------------------------ consensus_1610#0 GCAGGTCCCCCTGGTGGCGGGGACGGTGAACCGGGGGAGCGAGGTGATAACGGCG 786 consensus_1610#1 ------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |