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Takifugu rubripes
cluster # 1610 cluster # 1610       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1610#0 length = 786 sequences # 2  
consensus_1610#1 length = 328 sequences # 1  

consensusID : consensus_1610#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 786
fasta sequence
                              [CTTAGGAGCAGGNGNTCTGTCTGGNTCACACGACCAACTTCCTTATAGGAGCTAGCCGAGCAGCTATTAGCGCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAAGCGGGTCGTAACCGAAGCGGGGCGTAACCGAAGCGGGTCGTGACCGAACCTGTCGTCTAGGACCAGGACCCGACCGTCGCCATGGCCGTCAGAGCCTCGTTTGAGAAGAACAACGAGATCGGCTGCTTCGCCAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGCGGCTCCGAGAACTTCTACAGCGTGTTTGAAGGCGAGCTAGCAGAGACCGGCCCAGTGGCCCACGCCTCCATCGCAGGCTGGCGCATCATCGGCCGCATGTGTGTGGGGAACCGCCACGGCCTGTTGGTGCCCAACAACACGACGGACCAGGAGCTGCAGCACATCAGGAACTGTCTCCCCGACAACGTCCGGATCCAGAGGGTGGAGGAGCGACTGTCCGCCCTCGGGAACGTCATCGCCTGCAACGACTACGTGGCGCTGGTCCACACCGACCTGGACAGGGAAACGGAGGAGATCCTGGCTGACACCCTGAAGGTGGAGGTTTTCCGTCAGACGGTGGCGGAGCAGGTCCTGGTCGGCTCTTACTGCGCCTTCAGCAACCAGGGAGGCCTCGTCCACCCAAAGACGTCCATCGAGGACCAGGACGAGCTGTCCTCGCTCCTGCAGGTCCCCCTGGTGGCGGGGACGGTGAACCGGGGGAGCGAGGTGATAACGGCG]

[+] EMBL CA588645             [CTTAGGAGCAGGNGNTCTGTCTGGNTCACACGACCAACTTCCTTATAGGAGCTAGCCGAGCAGCTATTAGCGCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAAGCGGGTCGTAACCGAAGCGGGTCGTAACCGAAGCGGGTCGTGACCGAACCTGTCGTCTAGGACCAGGACCCGACCGTCGCCATGGCCGTCAGAGCCTCGTTTGAGAAGAACAACGAGATCGGCTGCTTCGCCAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGCGGCTCCGAGAACTTCTACAGCGTGTTTGAAGGCGAGCTAGCAGAGACCGTCCCAGTGGTCCACGCCTCCATCGCAGGCTGTCGCATCATCGGCCGCATGTGTGTGGGGAACCGCCACGGCCTGTTGGTGCCCAACAACACGACGGACCAGGAGCTGCAGCACATCAGGAACTGTCTCCCCGACAACGTCCGGATCCAGAGGGTGGAGGAGCGACTGTCCGCCCTCGGGAACGTCATCGCCTGCAACGACTACGTGGCGCTGGTCCACACCGACCTGGACAGGGAAACGGAGGAGATCCTGGCTGACACCCTGAAGGTGGAGGTTTTCCGTCAGACGGTGGCGGAGCAGGTCCTGGTCGGCTCTTACTGCGCCTTCAGCAACCAGGGAGGCCTCGTCCACCCAAAGACGTCCATCGAGGACCAGGACGAGCTGTCCTCGCTCCTGCAGGTCCCCCTGGTGGCGGGGACGGTGAACCGGGGGAGCGAGGTGATAACGGCG]
[+] EMBL FR0062843            [                                                                                                                             TCGTAACCGAAGCGGGGCGTAACCGAAGCGGGTCGTGACCGAACCTGTCGTCTAGGACCAGGACCCGACCGTCGCCATGGCCGTCAGAGCCTCGTTTGAGAAGAACAACGAGATCGGCTGCTTCGCCAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGCGGCTCCGAGAACTTCTACAGCGTGTTTGAAGGCGAGCTAGCCGAGACCGGCCCAGTGGCCCACGCCTTCATCGCAGGCTGGCGCATCATCGGCCGCAT                                                                                                                                                                                                                                                                                                                                                                                                                ]


>consensus_1610#0 CTTAGGAGCAGGNGNTCTGTCTGGNTCACACGACCAACTTCCTTATAGGAGCTAGCCGAG CAGCTATTAGCGCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAA GCGGGTCGTAACCGAAGCGGGGCGTAACCGAAGCGGGTCGTGACCGAACCTGTCGTCTAG GACCAGGACCCGACCGTCGCCATGGCCGTCAGAGCCTCGTTTGAGAAGAACAACGAGATC GGCTGCTTCGCCAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGCGGCTCCGAGAAC TTCTACAGCGTGTTTGAAGGCGAGCTAGCAGAGACCGGCCCAGTGGCCCACGCCTCCATC GCAGGCTGGCGCATCATCGGCCGCATGTGTGTGGGGAACCGCCACGGCCTGTTGGTGCCC AACAACACGACGGACCAGGAGCTGCAGCACATCAGGAACTGTCTCCCCGACAACGTCCGG ATCCAGAGGGTGGAGGAGCGACTGTCCGCCCTCGGGAACGTCATCGCCTGCAACGACTAC GTGGCGCTGGTCCACACCGACCTGGACAGGGAAACGGAGGAGATCCTGGCTGACACCCTG AAGGTGGAGGTTTTCCGTCAGACGGTGGCGGAGCAGGTCCTGGTCGGCTCTTACTGCGCC TTCAGCAACCAGGGAGGCCTCGTCCACCCAAAGACGTCCATCGAGGACCAGGACGAGCTG TCCTCGCTCCTGCAGGTCCCCCTGGTGGCGGGGACGGTGAACCGGGGGAGCGAGGTGATA ACGGCG



consensusID : consensus_1610#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence
                              [CTTATATTGAATGTTTGTTGTATTGGCGCGCACGTGGTCACCTTCAGCGCGTGAGCAGAGGTGTTCTGTCTGGTTCACACGACCAACTTGTGCATCGTAGCTAGCCGAGCAGCTATTAGCGCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAAGCGGGTCGTAACCGAAGCGGGTCGTGACCGATCCTGTCGTCTAGGACCAGGACCCGACCGTCGCCATGGCCGTCAGAGCCTCGTTTGGGAAGAACAACGAGATCGGCTGCTTCGCCAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGGGGGTCCG]

[+] EMBL FR0057481            [CTTATATTGAATGTTTGTTGTATTGGCGCGCACGTGGTCACCTTCAGCGCGTGAGCAGAGGTGTTCTGTCTGGTTCACACGACCAACTTGTGCATCGTAGCTAGCCGAGCAGCTATTAGCGCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAAGCGGGTCGTAACCGAAGCGGGTCGTGACCGATCCTGTCGTCTAGGACCAGGACCCGACCGTCGCCATGGCCGTCAGAGCCTCGTTTGGGAAGAACAACGAGATCGGCTGCTTCGCCAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGGGGGTCCG]


>consensus_1610#1 CTTATATTGAATGTTTGTTGTATTGGCGCGCACGTGGTCACCTTCAGCGCGTGAGCAGAG GTGTTCTGTCTGGTTCACACGACCAACTTGTGCATCGTAGCTAGCCGAGCAGCTATTAGC GCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAAGCGGGTCGTAA CCGAAGCGGGTCGTGACCGATCCTGTCGTCTAGGACCAGGACCCGACCGTCGCCATGGCC GTCAGAGCCTCGTTTGGGAAGAACAACGAGATCGGCTGCTTCGCCAAGCTAACCAACACC TACTGCCTCGTGGCCATCGGGGGGTCCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1610#0      -------------------------------------------------CTTAGGAGCAG 11
consensus_1610#1      CTTATATTGAATGTTTGTTGTATTGGCGCGCACGTGGTCACCTTCAGCGCGTGAGCAGAG 60
                                                                       * *  *   **

consensus_1610#0      GNGNTCTGTCTGGNTCACACGACCAACTTCCTTATAGGAGCTAGCCGAGCAGCTATTAGC 71
consensus_1610#1      GTGTTCTGTCTGGTTCACACGACCAACTTGTGCATCGTAGCTAGCCGAGCAGCTATTAGC 120
                      * * ********* ***************    ** * **********************

consensus_1610#0      GCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAAGCGGGTCGTAA 131
consensus_1610#1      GCTAATGCTAACGTGTTCAACACGTTCAAAGTGATCGCTGGGAACCGAAGCGGGTCGTAA 180
                      ************************************************************

consensus_1610#0      CCGAAGCGGGGCGTAACCGAAGCGGGTCGTGACCGAACCTGTCGTCTAGGACCAGGACCC 191
consensus_1610#1      ----------------CCGAAGCGGGTCGTGACCGATCCTGTCGTCTAGGACCAGGACCC 224
                                      ******************** ***********************

consensus_1610#0      GACCGTCGCCATGGCCGTCAGAGCCTCGTTTGAGAAGAACAACGAGATCGGCTGCTTCGC 251
consensus_1610#1      GACCGTCGCCATGGCCGTCAGAGCCTCGTTTGGGAAGAACAACGAGATCGGCTGCTTCGC 284
                      ******************************** ***************************

consensus_1610#0      CAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGCGGCTCCGAGAACTTCTACAGCGT 311
consensus_1610#1      CAAGCTAACCAACACCTACTGCCTCGTGGCCATCGGGGGGTCCG---------------- 328
                      ************************************ ** ****                

consensus_1610#0      GTTTGAAGGCGAGCTAGCAGAGACCGGCCCAGTGGCCCACGCCTCCATCGCAGGCTGGCG 371
consensus_1610#1      ------------------------------------------------------------
                                                                                  

consensus_1610#0      CATCATCGGCCGCATGTGTGTGGGGAACCGCCACGGCCTGTTGGTGCCCAACAACACGAC 431
consensus_1610#1      ------------------------------------------------------------
                                                                                  

consensus_1610#0      GGACCAGGAGCTGCAGCACATCAGGAACTGTCTCCCCGACAACGTCCGGATCCAGAGGGT 491
consensus_1610#1      ------------------------------------------------------------
                                                                                  

consensus_1610#0      GGAGGAGCGACTGTCCGCCCTCGGGAACGTCATCGCCTGCAACGACTACGTGGCGCTGGT 551
consensus_1610#1      ------------------------------------------------------------
                                                                                  

consensus_1610#0      CCACACCGACCTGGACAGGGAAACGGAGGAGATCCTGGCTGACACCCTGAAGGTGGAGGT 611
consensus_1610#1      ------------------------------------------------------------
                                                                                  

consensus_1610#0      TTTCCGTCAGACGGTGGCGGAGCAGGTCCTGGTCGGCTCTTACTGCGCCTTCAGCAACCA 671
consensus_1610#1      ------------------------------------------------------------
                                                                                  

consensus_1610#0      GGGAGGCCTCGTCCACCCAAAGACGTCCATCGAGGACCAGGACGAGCTGTCCTCGCTCCT 731
consensus_1610#1      ------------------------------------------------------------
                                                                                  

consensus_1610#0      GCAGGTCCCCCTGGTGGCGGGGACGGTGAACCGGGGGAGCGAGGTGATAACGGCG 786
consensus_1610#1      -------------------------------------------------------
                                                                             




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)