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Takifugu rubripes
cluster # 1617 cluster # 1617       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1617#0 length = 636 sequences # 2  
consensus_1617#1 length = 601 sequences # 1  

consensusID : consensus_1617#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 636
fasta sequence
                              [TGAGGAGATAGCGCAGAATTTAGTGTTGACTCTTGATGTTTGAGGTACAATGACCCATCGGTTCATTCGTTAAAGTTGCAGGAAGTCGCCTGGAGAAATGCAGAGATTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAACCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGTCTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAGCAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGGGGTGTTTGTCACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGATGTGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAGTTCCATAAAATGTGTGTGTGTGTGTGTTTGCTGCTCTATGTCCATGTGTTAGACTTTAACCTACCCTAGTCTGGGCTTCCAGGATGTTGTCACTATAGATATGCTCAGAGAAGCATATCCAGTACTGGATGTTGTAGATCACAACAGGGGGCCCAAAGATAGTATACCAC]

[+] EMBL CA588546             [TGAGGAGATAGCGCAGAATTTAGTGTTGACTCTTGATGTTTGAGGTACAATGACCCATCTGTTCATTCGTTAAAGTTGCAGGAAGT GCCTGGAGAAATGCAGAGATTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAACCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGTCTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAGCAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGTGGTGTTTGTCACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGATGTGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAGTTCCATAAAATGTGTGTGTGTGTGTGTTTGCTGCTCTATGTCCATGTGTTAGACTTTAACCTACCCTAGTCTGGGCTTCCAGGATGTTGTCACTATAGATATGCTCAGAGAAGCATATCCAGTACTGGATGTTGTAGATCACAACAGGGGGCCCAAAGATAGTATACCAC]
[+] EMBL FR0059470            [                                                   GACCCATCGATTCATTCGTTAAAGTTGCAGGAAGTCGCCTGGAGAAATGCAGAGATTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAACCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGTCTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAGCAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGGGGTGTTTGTCACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCT                                                                                                                                                                                                                                             ]


>consensus_1617#0 TGAGGAGATAGCGCAGAATTTAGTGTTGACTCTTGATGTTTGAGGTACAATGACCCATCG GTTCATTCGTTAAAGTTGCAGGAAGTCGCCTGGAGAAATGCAGAGATTGAGACGTTGGAA AACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAACCGCTCATTGCGCC GTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGTCTCCTCTTTGACAT TGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAGCAGTGTTTTAGAAA CTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGGGGTGTTTGTCACCAATGCTGGGAA CTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGATGTGGAGGTGTCTCC AGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAGTTCCATAAAATGTG TGTGTGTGTGTGTTTGCTGCTCTATGTCCATGTGTTAGACTTTAACCTACCCTAGTCTGG GCTTCCAGGATGTTGTCACTATAGATATGCTCAGAGAAGCATATCCAGTACTGGATGTTG TAGATCACAACAGGGGGCCCAAAGATAGTATACCAC



consensusID : consensus_1617#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence
                              [TCATTCAAGCGCCATGAGGAGATAGCGCAGAATTTAGTGTTGACCCTAGATGGGTGAGGTACAATGACCCATCTGTTCATTCGTTAAAGTTGCAGGAAGTGCCTGGAGAAATGCAGAGACTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAACCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGTCTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAGCAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGTGGTGTTTGTCACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGATGTGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAGTTCCATAAGATGTGTGTGTTGGTGTCAGGACAGGGTCCTGTGGAGGAGGTCGCTCACAAGTATCCTATGACAGAGATTTGACCTTAAATATTGAACCTATAAGTAGTTAAGTCAAGAGAGAT]

[+] EMBL CA588533             [TCATTCAAGCGCCATGAGGAGATAGCGCAGAATTTAGTGTTGACCCTAGATGGGTGAGGTACAATGACCCATCTGTTCATTCGTTAAAGTTGCAGGAAGTGCCTGGAGAAATGCAGAGACTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAACCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGTCTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAGCAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGTGGTGTTTGTCACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGATGTGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAGTTCCATAAGATGTGTGTGTTGGTGTCAGGACAGGGTCCTGTGGAGGAGGTCGCTCACAAGTATCCTATGACAGAGATTTGACCTTAAATATTGAACCTATAAGTAGTTAAGTCAAGAGAGAT]


>consensus_1617#1 TCATTCAAGCGCCATGAGGAGATAGCGCAGAATTTAGTGTTGACCCTAGATGGGTGAGGT ACAATGACCCATCTGTTCATTCGTTAAAGTTGCAGGAAGTGCCTGGAGAAATGCAGAGAC TGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAAC CGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGTC TCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAGC AGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGTGGTGTTTGTCA CCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGATG TGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAGT TCCATAAGATGTGTGTGTTGGTGTCAGGACAGGGTCCTGTGGAGGAGGTCGCTCACAAGT ATCCTATGACAGAGATTTGACCTTAAATATTGAACCTATAAGTAGTTAAGTCAAGAGAGA T



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1617#0      --------------TGAGGAGATAGCGCAGAATTTAGTGTTGACTCTTGATGTTTGAGGT 46
consensus_1617#1      TCATTCAAGCGCCATGAGGAGATAGCGCAGAATTTAGTGTTGACCCTAGATGGGTGAGGT 60
                                    ****************************** ** ****  ******

consensus_1617#0      ACAATGACCCATCGGTTCATTCGTTAAAGTTGCAGGAAGTCGCCTGGAGAAATGCAGAGA 106
consensus_1617#1      ACAATGACCCATCTGTTCATTCGTTAAAGTTGCAGGAAGT-GCCTGGAGAAATGCAGAGA 119
                      ************* ************************** *******************

consensus_1617#0      TTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAA 166
consensus_1617#1      CTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAA 179
                       ***********************************************************

consensus_1617#0      CCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGT 226
consensus_1617#1      CCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGT 239
                      ************************************************************

consensus_1617#0      CTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAG 286
consensus_1617#1      CTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAG 299
                      ************************************************************

consensus_1617#0      CAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGGGGTGTTTGTC 346
consensus_1617#1      CAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGTGGTGTTTGTC 359
                      ************************************************* **********

consensus_1617#0      ACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGAT 406
consensus_1617#1      ACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGAT 419
                      ************************************************************

consensus_1617#0      GTGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAG 466
consensus_1617#1      GTGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAG 479
                      ************************************************************

consensus_1617#0      TTCCATAAAATGTGTGTGTGTGTGTGTTTGCTGCTCTATGTCCATGTGTTAGACTTTAAC 526
consensus_1617#1      TTCCATAAGATGTGTGTGTTGGTGTCAGGACAGGGTCCTGTGGAGGAGGTCGCTCACAAG 539
                      ******** **********  ****     * *     ***  * * * * *     ** 

consensus_1617#0      CTACCCTAGTCTGGGCTTCCA----GGATGTTGTCACTATAGATATGCTCAGAGAAGCAT 582
consensus_1617#1      TATCCTATGACAGAGATTTGACCTTAAATATTGAACCTATAAGTA-GTTAAGTCAAGAGA 598
                         **   * * * * **  *      ** ***   *****  ** * * **  ***   

consensus_1617#0      ATCCAGTACTGGATGTTGTAGATCACAACAGGGGGCCCAAAGATAGTATACCAC 636
consensus_1617#1      GAT--------------------------------------------------- 601
                                                                            




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)