These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1617#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 636 fasta sequence [TGAGGAGATAGCGCAGAATTTAGTGTTGACTCTTGATGTTTGAGGTACAATGACCCATCGGTTCATTCGTTAAAGTTGCAGGAAGTCGCCTGGAGAAATGCAGAGATTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAACCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGTCTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAGCAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGGGGTGTTTGTCACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGATGTGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAGTTCCATAAAATGTGTGTGTGTGTGTGTTTGCTGCTCTATGTCCATGTGTTAGACTTTAACCTACCCTAGTCTGGGCTTCCAGGATGTTGTCACTATAGATATGCTCAGAGAAGCATATCCAGTACTGGATGTTGTAGATCACAACAGGGGGCCCAAAGATAGTATACCAC] [+] EMBL CA588546 [TGAGGAGATAGCGCAGAATTTAGTGTTGACTCTTGATGTTTGAGGTACAATGACCCATCTGTTCATTCGTTAAAGTTGCAGGAAGT GCCTGGAGAAATGCAGAGATTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAACCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGTCTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAGCAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGTGGTGTTTGTCACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGATGTGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAGTTCCATAAAATGTGTGTGTGTGTGTGTTTGCTGCTCTATGTCCATGTGTTAGACTTTAACCTACCCTAGTCTGGGCTTCCAGGATGTTGTCACTATAGATATGCTCAGAGAAGCATATCCAGTACTGGATGTTGTAGATCACAACAGGGGGCCCAAAGATAGTATACCAC] [+] EMBL FR0059470 [ GACCCATCGATTCATTCGTTAAAGTTGCAGGAAGTCGCCTGGAGAAATGCAGAGATTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAACCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGTCTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAGCAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGGGGTGTTTGTCACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCT ] consensusID : consensus_1617#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [TCATTCAAGCGCCATGAGGAGATAGCGCAGAATTTAGTGTTGACCCTAGATGGGTGAGGTACAATGACCCATCTGTTCATTCGTTAAAGTTGCAGGAAGTGCCTGGAGAAATGCAGAGACTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAACCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGTCTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAGCAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGTGGTGTTTGTCACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGATGTGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAGTTCCATAAGATGTGTGTGTTGGTGTCAGGACAGGGTCCTGTGGAGGAGGTCGCTCACAAGTATCCTATGACAGAGATTTGACCTTAAATATTGAACCTATAAGTAGTTAAGTCAAGAGAGAT] [+] EMBL CA588533 [TCATTCAAGCGCCATGAGGAGATAGCGCAGAATTTAGTGTTGACCCTAGATGGGTGAGGTACAATGACCCATCTGTTCATTCGTTAAAGTTGCAGGAAGTGCCTGGAGAAATGCAGAGACTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAACCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGTCTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAGCAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGTGGTGTTTGTCACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGATGTGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAGTTCCATAAGATGTGTGTGTTGGTGTCAGGACAGGGTCCTGTGGAGGAGGTCGCTCACAAGTATCCTATGACAGAGATTTGACCTTAAATATTGAACCTATAAGTAGTTAAGTCAAGAGAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1617#0 --------------TGAGGAGATAGCGCAGAATTTAGTGTTGACTCTTGATGTTTGAGGT 46 consensus_1617#1 TCATTCAAGCGCCATGAGGAGATAGCGCAGAATTTAGTGTTGACCCTAGATGGGTGAGGT 60 ****************************** ** **** ****** consensus_1617#0 ACAATGACCCATCGGTTCATTCGTTAAAGTTGCAGGAAGTCGCCTGGAGAAATGCAGAGA 106 consensus_1617#1 ACAATGACCCATCTGTTCATTCGTTAAAGTTGCAGGAAGT-GCCTGGAGAAATGCAGAGA 119 ************* ************************** ******************* consensus_1617#0 TTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAA 166 consensus_1617#1 CTGAGACGTTGGAAAACTGGGTGGCAGCTGGTGAAATCAAGCTGTGAAGCTGCAGCAAAA 179 *********************************************************** consensus_1617#0 CCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGT 226 consensus_1617#1 CCGCTCATTGCGCCGTTATGGAGCTCACGAAATTATAGCCCTGGCCCCAACTCCTTTGGT 239 ************************************************************ consensus_1617#0 CTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAG 286 consensus_1617#1 CTCCTCTTTGACATTGATGGTGTGCTGGTTCGGGGCCGCACGCCCATCCCTGCAGCCAAG 299 ************************************************************ consensus_1617#0 CAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGGGGTGTTTGTC 346 consensus_1617#1 CAGTGTTTTAGAAACTTGGTGGACCGTAATGGGAAATACAAGGTCCCCGTGGTGTTTGTC 359 ************************************************* ********** consensus_1617#0 ACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGAT 406 consensus_1617#1 ACCAATGCTGGGAACTGCATGAGGCAGGCCAAAGCGGAGCATTTGTCACATCTGCTCGAT 419 ************************************************************ consensus_1617#0 GTGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAG 466 consensus_1617#1 GTGGAGGTGTCTCCAGACCAGGTGATGCTGTCCCACAGTCCTTTGCGTATGTTCACCCAG 479 ************************************************************ consensus_1617#0 TTCCATAAAATGTGTGTGTGTGTGTGTTTGCTGCTCTATGTCCATGTGTTAGACTTTAAC 526 consensus_1617#1 TTCCATAAGATGTGTGTGTTGGTGTCAGGACAGGGTCCTGTGGAGGAGGTCGCTCACAAG 539 ******** ********** **** * * *** * * * * * ** consensus_1617#0 CTACCCTAGTCTGGGCTTCCA----GGATGTTGTCACTATAGATATGCTCAGAGAAGCAT 582 consensus_1617#1 TATCCTATGACAGAGATTTGACCTTAAATATTGAACCTATAAGTA-GTTAAGTCAAGAGA 598 ** * * * * ** * ** *** ***** ** * * ** *** consensus_1617#0 ATCCAGTACTGGATGTTGTAGATCACAACAGGGGGCCCAAAGATAGTATACCAC 636 consensus_1617#1 GAT--------------------------------------------------- 601 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |