These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 672 fasta sequence [CTGACCCTCTACCTGAACCCGCGCAGCCACGCTCACCTGCAGCCGCCGAGCGATCCAGGTGTTTTCCACAAGTCACTACCAATCCCATCAGACATGATCATCAAACTGGGAAGGCTGACACCTGGATATTTCCGTCTCCTGCAGAGACAAGTTGCCGGTGAAGTGCAGACGCAACCACAAGACCGCGCTGTCAACCAGATCGCTATGATGCTGGCCATCTTAGGTCTGGGCCTGTCGTACTACAGCGCCAAGCAGATGACGGAGAAGGTCCAAGTACAGCCTGCACCCTGACGCAAGCCTGACCAGGTGATGGGATCAAGGAGGCAGAGTGTGGTCACGTTCTTCTGTCAGGACTTTTCAACCCTTAAGCTAGTGGACGGGGCGGCTTTTACGGGCTGTTTTTGGGGGGTGATAACCTACTTTCTGCCTTCTGGTGTGATAAATAGTTGTTCCAACGGTATGCACTTGTTACATGCTCCAACACTGTTCTGAGCTCTAAAAATCTGGAAAAACAGGATGAAAATTATGAACAGTCACGTTTTTTTAAGGGAAAGTTGACTGCACGTGAGACCTACTTTGTACTGACGAACCAAGAGGGATGTGAACGAGGTTGTCTCTGTTACCTTTCAGGGCTTTGTGAACATGTAGGAGCCATGCTCGCCATATATACTT] [+] EMBL CA844535 [CTGACCCTCTACCTGAACCCGCGCAGCCACGCTCACCTGCAGCCGCCGAGCGATCCAGGTGTTTTCCACAAGTCACTACCAATCCCATCAGACATGATCATCAAACTGGGAAGGCTGACACCTGGATATTTCCGTCTCCTGCAGAGACAAGTTGCCGGTGAAGTGCAGACGCAACCACAAGACCGCGCTGTCAACCAGATCGCTATGATGCTGGCCATCTTAGGTCTGGGCCTGTCGTACTACAGCGCCAAGCAGATGACGGAGAAGGTCCAAGTACAGCCTGCACCCTGACGCAAGCCTGACCAGGTGATGGGATCAAGGAGGCAGAGTGTGGTCACGTTCTTCTGTCAGGACTTTTCAACCCTTAACCTAGTGGATGGGGCGGCTTTTACGGACTGTTTTTGGGGGGTGATAACCTACTTTCTGCCTTCTGGTGTGATAAATAGTTGTTCCAACGGTATGCACTTGTTACATGCTCCAACACTGTTCTGAGCTCTAAAAATCTGGAAAAACAGGATGAAAATTATGAACAGTCACGTTTTTTTAAGGGAAAGTTGACTGCACGTGAGACCTACTTTGTACTGACGAACCAAGAGGGATGTGAACGAGGTTGTCTCTGTTACCTTTCAGGGCTTTGTGAACATGTAGGAGCCATGCTCGCCATATATACTT] [+] EMBL FR0057743 [ TTTTCCACAAGTCACTACCACTCCCATCAGACATGATCATCAAACTGGGAAGGCTGACACCTGGATATTTCCGTCTCCTGCAGAGACAAGTTGCCGGTGAAGTGCAGACGCAACCACACGACCGCGCTGTCAACCAGATCGCTATGATGCTGGCCATCTTAGGTCTGGGCCTGTCGTACTACAGCGCCAAGCAGATGACGGAGAAGGTCCAAGTACAGCCTGCACCCTGACGCAAGCCTGACCAGGTGATGGGATCAAGGAGGCAGAGTGTGGTCACGTTCTTCTGTCAGGACTTTTCAACCCTTAAGCTAGTGGCCGGGGCGGCTTTTACGGGCTGTTTTTGGGG ] consensusID : consensus_1621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [ACCCTTTCAGCCACGCTCACCTGCAGCCGCCGAGCGATCCAGGTGTTTTCCACAAGTCACTACCAATCCCATCAGACATGATCATCAAACTGGGAAGGCTGACACCTGGATATTTCCGTCTCCTGCAGGTATTTTTCACTTCACCACAACTGGAAACTAACACAACTCAAGTGGACCCAAATATAACCTGTTCAATGTTTCTTTGTGTTCCACCGATCGGCTTTTTGGGTTGTTATATGCGTACATGCTGGCCCTTGTTTAAAATCTTTTTTTGGGGAACTCTTGTGGAAATAGGGCACCTGCCTCATGTCGCTTTTTTCTCCTTTTAAAGTGAGTAAAGTGGCCAGATTGGTTTTAATTTATTTTACTGGTTTTAAGCAAAAACATTTTTAAACAAGTTTATTTAAGATTGCATTTTCCTTTTTTAAAAACAAATGGCTGCTTGGCTTGAATTGAGCGTTGGGCCCAGTTATAAATGAATTTAAATAATTTGTTGAAGCCCAGTTAGCTGAGTCTTTGGGGACATCTTTAGGAAT] [+] EMBL CA340981 [ACCCTTTCAGCCACGCTCACCTGCAGCCGCCGAGCGATCCAGGTGTTTTCCACAAGTCACTACCAATCCCATCAGACATGATCATCAAACTGGGAAGGCTGACACCTGGATATTTCCGTCTCCTGCAGGTATTTTTCACTTCACCACAACTGGAAACTAACACAACTCAAGTGGACCCAAATATAACCTGTTCAATGTTTCTTTGTGTTCCACCGATCGGCTTTTTGGGTTGTTATATGCGTACATGCTGGCCCTTGTTTAAAATCTTTTTTTGGGGAACTCTTGTGGAAATAGGGCACCTGCCTCATGTCGCTTTTTTCTCCTTTTAAAGTGAGTAAAGTGGCCAGATTGGTTTTAATTTATTTTACTGGTTTTAAGCAAAAACATTTTTAAACAAGTTTATTTAAGATTGCATTTTCCTTTTTTAAAAACAAATGGCTGCTTGGCTTGAATTGAGCGTTGGGCCCAGTTATAAATGAATTTAAATAATTTGTTGAAGCCCAGTTAGCTGAGTCTTTGGGGACATCTTTAGGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1621#0 CTGACCCTCTACCTGAACCCGCGCAGCCACGCTCACCTGCAGCCGCCGAGCGATCCAGGT 60 consensus_1621#1 ----------------ACCCTTTCAGCCACGCTCACCTGCAGCCGCCGAGCGATCCAGGT 44 **** ************************************* consensus_1621#0 GTTTTCCACAAGTCACTACCAATCCCATCAGACATGATCATCAAACTGGGAAGGCTGACA 120 consensus_1621#1 GTTTTCCACAAGTCACTACCAATCCCATCAGACATGATCATCAAACTGGGAAGGCTGACA 104 ************************************************************ consensus_1621#0 CCTGGATATTTCCGTCTCCTGCAGAGACAAGTTGCCGGTGAAGTGCAGACGCAACCACAA 180 consensus_1621#1 CCTGGATATTTCCGTCTCCTGCAGGTAT---TTTTCACTTCACCACAACTGGAAAC-TAA 160 ************************ * ** * * * ** * ** * ** consensus_1621#0 GACCGCGCTGTCAACCAGATCGCTATGATGCTGGCCATCTTAGGTCTGGGCCTGTCGTAC 240 consensus_1621#1 CACAAC----TCAAGTGGACCC---AAATATAACCTGTTCAATGTTT-----CTTTGTGT 208 ** * **** ** * ** * * * ** * * ** consensus_1621#0 TACAGCGCCAAGCAGATGACGGAGAAGGTCCAAGTACAGCCTGCACCCTGACGCAAGCCT 300 consensus_1621#1 TCCACCGATCGGCTTTTTG-GGTTGTTATATGCGTACATGCTGGCCCTTGTTTAAAATCT 267 * ** ** ** * ** * ***** *** ** ** ** ** consensus_1621#0 GACCAGGTGATGGGATCAAGGAGGCAGAGTGTGGTCACGTTCTTCTGTCAGGACTTTTCA 360 consensus_1621#1 TTTTTTGGGGAACTCTTGTGGAAATAGGG------CACCTGCCTCATGTCGCTTTTTTCT 321 * * * *** ** * *** * * ** * ***** consensus_1621#0 ACCCTTAAGCTAGTGGACGGGGCGGCTTTTACGGGCTGTTTTTGGGGGGTGATAACCTAC 420 consensus_1621#1 CCTTTTAA---AGTGAGTAAAGTGGC-----CAGATTGGTTTTAATTTATTTTA-CTGGT 372 * **** **** * *** * * ** **** * ** * consensus_1621#0 TTTCTGCCTTCTGGTGTGATAAATAGTTGTTCCAACGGTATGCACTTGTTACATGCTCCA 480 consensus_1621#1 TTTAAGCAAAAACATTTTTAAACAAGTTTATTTAAGATTGCATTTTCCTTTTTTAAAAAC 432 *** ** * * ** **** * ** * * ** * consensus_1621#0 ACACTGTT-CTGAGCTCTAAAAATCTGGAAAAACAGGATGAAAATTATGAACAGTCACGT 539 consensus_1621#1 AAATGGCTGCTTGGCTTGAATTGAGCGTTGGGCCCAGTTATAA---ATGAATTTAAATAA 489 * * * * ** *** ** * * * * ** ***** * consensus_1621#0 TTTTTTAAGGGAAAGTTGACTGCACGT---GAGACCTACTTTGTACTGACGAACCAAGAG 596 consensus_1621#1 TTTGTTGAAGCCCAGTTAGCTGAGTCTTTGGGGACATCTTTAGGAAT------------- 536 *** ** * * **** *** * * *** * ** * * * consensus_1621#0 GGATGTGAACGAGGTTGTCTCTGTTACCTTTCAGGGCTTTGTGAACATGTAGGAGCCATG 656 consensus_1621#1 ------------------------------------------------------------ consensus_1621#0 CTCGCCATATATACTT 672 consensus_1621#1 ---------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |