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Takifugu rubripes
cluster # 1632 cluster # 1632       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1632#0 length = 445 sequences # 1  
 consensus_1632#1 length = 313 sequences # 2  
consensusID : consensus_1632#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 445
fasta sequence 
                              [CTGCTCTTTATTAAAGTGCTTCAAACCCCAATGAAGGAACTGGTTCGTCTGCAGGATAACAACCAAGTGGGAATTTCTGAAACTCCATGAGTATCTGAATGATTCCCAGTGTTCTGGACCCCATCAGGAGCTATATTGGATCAAACTCACCGCCTGTCCTCACTGGATGGCGGCATCAGCACCGTCTGTGGGCTGACCAGCATCCATGTATCCGGAGAAGTCTCCCAACGGCAGCAGGTGGTACACCCCTCTCACTGGGAACTCCACAGGGCTGGACTGAGGGGGTGGAGGAGGCAGCGGAGGGCTTTTGGTATCCAGTGCAAAGCTCCAGCTCCTCACCGAGTGGTTATATTTAGCGATGGCCGCGGCCAGAAGCTCCTGGGGCACCAGCAGGGGCTGCTCTGGCACCTGATCAGCGAGGAGGTTCAGGGGCGACGGGCCAGGG]

[+] EMBL CA331195             [CTGCTCTTTATTAAAGTGCTTCAAACCCCAATGAAGGAACTGGTTCGTCTGCAGGATAACAACCAAGTGGGAATTTCTGAAACTCCATGAGTATCTGAATGATTCCCAGTGTTCTGGACCCCATCAGGAGCTATATTGGATCAAACTCACCGCCTGTCCTCACTGGATGGCGGCATCAGCACCGTCTGTGGGCTGACCAGCATCCATGTATCCGGAGAAGTCTCCCAACGGCAGCAGGTGGTACACCCCTCTCACTGGGAACTCCACAGGGCTGGACTGAGGGGGTGGAGGAGGCAGCGGAGGGCTTTTGGTATCCAGTGCAAAGCTCCAGCTCCTCACCGAGTGGTTATATTTAGCGATGGCCGCGGCCAGAAGCTCCTGGGGCACCAGCAGGGGCTGCTCTGGCACCTGATCAGCGAGGAGGTTCAGGGGCGACGGGCCAGGG]




>consensus_1632#0
CTGCTCTTTATTAAAGTGCTTCAAACCCCAATGAAGGAACTGGTTCGTCTGCAGGATAAC
AACCAAGTGGGAATTTCTGAAACTCCATGAGTATCTGAATGATTCCCAGTGTTCTGGACC
CCATCAGGAGCTATATTGGATCAAACTCACCGCCTGTCCTCACTGGATGGCGGCATCAGC
ACCGTCTGTGGGCTGACCAGCATCCATGTATCCGGAGAAGTCTCCCAACGGCAGCAGGTG
GTACACCCCTCTCACTGGGAACTCCACAGGGCTGGACTGAGGGGGTGGAGGAGGCAGCGG
AGGGCTTTTGGTATCCAGTGCAAAGCTCCAGCTCCTCACCGAGTGGTTATATTTAGCGAT
GGCCGCGGCCAGAAGCTCCTGGGGCACCAGCAGGGGCTGCTCTGGCACCTGATCAGCGAG
GAGGTTCAGGGGCGACGGGCCAGGG

consensusID : consensus_1632#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 313
fasta sequence 
                              [TCTGCTCTTTATTAAAGTGCTTCCAACCCCAATGAAGGAACTGGTTCGTCTGCAGGATAACAACCAAGTGGGAATTTCTGAAACTCCATGAGTATCTGAATGATTCCCAGTGTTCTGGACCCCATCAGGAGCTATCGCCTGTCCTCACTGGATGGCGGCATCAGCACCGTCTGTGGGCTGACCAGCATCCATGTATCCGGAGAAGTCTCCCAACGGCAGCAGGTGTTACACCCCTCTCACTGGGAACTCCACAGGGCTGGACTGAGGGGGTGGAGGAGGCAGCGGAGGGCTTTTGGTATCCAGTGCAAAGCCC]

[+] EMBL CA331314             [TCTGCTCTTTATTAAAGTGCTTCCAACCCCAATGAAGGAACTGGTTCGTCTGCAGGATAACAACCAAGTGGGAATTTCTGAAACTCCATGAGTATCTGAATGATTCCCAGTGTTCTGGACCCCATCAGGAG    CGCCTG                                                                                                                                                                            ]
[+] EMBL CA331320             [  TGCTCTTTATTAAAGTGCTTCCCCCCCCAATGAAGGAACTGGTTCGTCTGCAGGATAACAACCAAGTGGGAATTTCTGAAACTCCATGAGTATCTGAATGATTCCCAGTGTTCTGGACCCCATCAGGAGCTATCGCCTGTCCTCACTGGATGGCGGCATCAGCACCGTCTGTGGGCTGACCAGCATCCATGTATCCGGAGAAGTCTCCCAACGGCAGCAGGTGTTACACCCCTCTCACTGGGAACTCCACAGGGCTGGACTGAGGGGGTGGAGGAGGCAGCGGAGGGCTTTTGGTATCCAGTGCAAAGCCC]




>consensus_1632#1
TCTGCTCTTTATTAAAGTGCTTCCAACCCCAATGAAGGAACTGGTTCGTCTGCAGGATAA
CAACCAAGTGGGAATTTCTGAAACTCCATGAGTATCTGAATGATTCCCAGTGTTCTGGAC
CCCATCAGGAGCTATCGCCTGTCCTCACTGGATGGCGGCATCAGCACCGTCTGTGGGCTG
ACCAGCATCCATGTATCCGGAGAAGTCTCCCAACGGCAGCAGGTGTTACACCCCTCTCAC
TGGGAACTCCACAGGGCTGGACTGAGGGGGTGGAGGAGGCAGCGGAGGGCTTTTGGTATC
CAGTGCAAAGCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1632#0      -CTGCTCTTTATTAAAGTGCTTCAAACCCCAATGAAGGAACTGGTTCGTCTGCAGGATAA 59
consensus_1632#1      TCTGCTCTTTATTAAAGTGCTTCCAACCCCAATGAAGGAACTGGTTCGTCTGCAGGATAA 60
                       ********************** ************************************

consensus_1632#0      CAACCAAGTGGGAATTTCTGAAACTCCATGAGTATCTGAATGATTCCCAGTGTTCTGGAC 119
consensus_1632#1      CAACCAAGTGGGAATTTCTGAAACTCCATGAGTATCTGAATGATTCCCAGTGTTCTGGAC 120
                      ************************************************************

consensus_1632#0      CCCATCAGGAGCTATATTGGATCAAACTCACCGCCTGTCCTCACTGGATGGCGGCATCAG 179
consensus_1632#1      CCCATCAGGAGCTAT----------------CGCCTGTCCTCACTGGATGGCGGCATCAG 164
                      ***************                *****************************

consensus_1632#0      CACCGTCTGTGGGCTGACCAGCATCCATGTATCCGGAGAAGTCTCCCAACGGCAGCAGGT 239
consensus_1632#1      CACCGTCTGTGGGCTGACCAGCATCCATGTATCCGGAGAAGTCTCCCAACGGCAGCAGGT 224
                      ************************************************************

consensus_1632#0      GGTACACCCCTCTCACTGGGAACTCCACAGGGCTGGACTGAGGGGGTGGAGGAGGCAGCG 299
consensus_1632#1      GTTACACCCCTCTCACTGGGAACTCCACAGGGCTGGACTGAGGGGGTGGAGGAGGCAGCG 284
                      * **********************************************************

consensus_1632#0      GAGGGCTTTTGGTATCCAGTGCAAAGCTCCAGCTCCTCACCGAGTGGTTATATTTAGCGA 359
consensus_1632#1      GAGGGCTTTTGGTATCCAGTGCAAAGCCC------------------------------- 313
                      *************************** *                               

consensus_1632#0      TGGCCGCGGCCAGAAGCTCCTGGGGCACCAGCAGGGGCTGCTCTGGCACCTGATCAGCGA 419
consensus_1632#1      ------------------------------------------------------------
                                                                                  

consensus_1632#0      GGAGGTTCAGGGGCGACGGGCCAGGG 445
consensus_1632#1      --------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)