Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Takifugu rubripes
cluster # 1635 cluster # 1635       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1635#0 length = 368 sequences # 2  
 consensus_1635#1 length = 343 sequences # 1  
consensusID : consensus_1635#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 368
fasta sequence 
                              [GCAACACAAGATGGCAAAGATCCTGAGTGCCACCATCGTCGCGGCTGCATTGTTGGTCGTAGTCAACTCGCTGACGTGCAACCAGTGCAAATACGGCTTGGCAGGGTTCTGCCTCAGCAATTCTGAAGTGATGTGCTCGACCAATACGAGCGTGTTGCTTCACTGGAAAAGCGACGTTCGCATCCATCTCCAGCTCCGTGGGCTTCAACATGCAGGGCTGCAGAGAGCCGACCGGGTGCAGCAGCACCACCAACGGAACCATCCTGGGGGTCACCTACGAGAGCACTCCTGGCCTGCTGCTCCACAGCCAAGTGCAAGCCGGTGACAGTCACCGGTGCCCCGACCAGCAGGGTGACCTTGGCGGGAAG]

[+] EMBL FR0056529            [GCAACACAAGATGGCAAAGATCCTGAGTGCCACCATCGTCGCGGTTGCATTGTTGGTCGTAGTCAACTCGCTGACGTGCAACCAGTGCAAATACGGCTTGGCAGGGTTCTGCCTCAGCAATTCTGAAGTGATGTGCTCGACCAATACGAGCGT TTGCTTCACTGGTAAAGCGACGTTCGCATCCATCTCCAGCTCCGTGGGCTTCAACATGCAGGGCTGCAGAGAGCCGCCCGGTTGCAGCAGCACCACCAACG                                                                                                                 ]
[+] EMBL FR0056227            [                                    CGTCGCGGCTGCATTGTTGGTCGTAGTCAACTCGCTGACGTGCAACCAGTGCAACTACGGCTTGGCACGGTTCTGCCTCAGCACTTCTGAAGTGATGTGCTCGACCAATACCAGCGTGTTGCTTCACTGGAAAAGCGACGTTCCCATCCATCTCCAGCTCCGTGGGCTTCAACATGCAGGGCTGCAGAGAGCCGACCGGGTGCACCACCACCACCAACGGAACCATCCTGGGGGTCACCTACGAGAGCACTCCTGGCCTGCTGCTCCACAGCCAAGTGCAAGCCGGTGACAGTCACCGGTGCCCCGACCAGCAGGGTGACCTTGGCGGGAAG]




>consensus_1635#0
GCAACACAAGATGGCAAAGATCCTGAGTGCCACCATCGTCGCGGCTGCATTGTTGGTCGT
AGTCAACTCGCTGACGTGCAACCAGTGCAAATACGGCTTGGCAGGGTTCTGCCTCAGCAA
TTCTGAAGTGATGTGCTCGACCAATACGAGCGTGTTGCTTCACTGGAAAAGCGACGTTCG
CATCCATCTCCAGCTCCGTGGGCTTCAACATGCAGGGCTGCAGAGAGCCGACCGGGTGCA
GCAGCACCACCAACGGAACCATCCTGGGGGTCACCTACGAGAGCACTCCTGGCCTGCTGC
TCCACAGCCAAGTGCAAGCCGGTGACAGTCACCGGTGCCCCGACCAGCAGGGTGACCTTG
GCGGGAAG

consensusID : consensus_1635#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence 
                              [TGGAGGATCCAGGATCTGACAGAGAGTCCAGCAACACAAGATGGGAAGGATCCTGAGTGCCAGCATCGTCGCGGTTGCAATGTTGGTCGTAGTCAACTCGCTGACGTGGAGCCAGTGCACATACGGCTTGGCAGGGTTCTGCCTCAGCAATTCTGAAGTGATGTGCTCGACCAATACCAGCGTTTGCTTCACTGGAAAAGCGACGTTCCCATCCATCTCCAACTCCGTGGGCTGTAACATGCAGGGCTGCAGATAGACGACCGGATGCATCACCACGACGATCGGAACCATCCTGGGGGTCACGTACGAGACCAAACTGGTCTGCTGCTCGACAGTCGTGTGG]

[+] EMBL FR0056537            [TGGAGGATCCAGGATCTGACAGAGAGTCCAGCAACACAAGATGGGAAGGATCCTGAGTGCCAGCATCGTCGCGGTTGCAATGTTGGTCGTAGTCAACTCGCTGACGTGGAGCCAGTGCACATACGGCTTGGCAGGGTTCTGCCTCAGCAATTCTGAAGTGATGTGCTCGACCAATACCAGCGTTTGCTTCACTGGAAAAGCGACGTTCCCATCCATCTCCAACTCCGTGGGCTGTAACATGCAGGGCTGCAGATAGACGACCGGATGCATCACCACGACGATCGGAACCATCCTGGGGGTCACGTACGAGACCAAACTGGTCTGCTGCTCGACAGTCGTGTGG]




>consensus_1635#1
TGGAGGATCCAGGATCTGACAGAGAGTCCAGCAACACAAGATGGGAAGGATCCTGAGTGC
CAGCATCGTCGCGGTTGCAATGTTGGTCGTAGTCAACTCGCTGACGTGGAGCCAGTGCAC
ATACGGCTTGGCAGGGTTCTGCCTCAGCAATTCTGAAGTGATGTGCTCGACCAATACCAG
CGTTTGCTTCACTGGAAAAGCGACGTTCCCATCCATCTCCAACTCCGTGGGCTGTAACAT
GCAGGGCTGCAGATAGACGACCGGATGCATCACCACGACGATCGGAACCATCCTGGGGGT
CACGTACGAGACCAAACTGGTCTGCTGCTCGACAGTCGTGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1635#0      ------------------------------GCAACACAAGATGGCAAAGATCCTGAGTGC 30
consensus_1635#1      TGGAGGATCCAGGATCTGACAGAGAGTCCAGCAACACAAGATGGGAAGGATCCTGAGTGC 60
                                                    ************** ** ************

consensus_1635#0      CACCATCGTCGCGGCTGCATTGTTGGTCGTAGTCAACTCGCTGACGTGCAACCAGTGCAA 90
consensus_1635#1      CAGCATCGTCGCGGTTGCAATGTTGGTCGTAGTCAACTCGCTGACGTGGAGCCAGTGCAC 120
                      ** *********** **** **************************** * ******** 

consensus_1635#0      ATACGGCTTGGCAGGGTTCTGCCTCAGCAATTCTGAAGTGATGTGCTCGACCAATACGAG 150
consensus_1635#1      ATACGGCTTGGCAGGGTTCTGCCTCAGCAATTCTGAAGTGATGTGCTCGACCAATACCAG 180
                      ********************************************************* **

consensus_1635#0      CGTGTTGCTTCACTGGAAAAGCGACGTTCGCATCCATCTCCAGCTCCGTGGGCTTCAACA 210
consensus_1635#1      CGT-TTGCTTCACTGGAAAAGCGACGTTCCCATCCATCTCCAACTCCGTGGGCTGTAACA 239
                      *** ************************* ************ ***********  ****

consensus_1635#0      TGCAGGGCTGCAGAGAGCCGACCGGGTGCAGCAGCACCACCAACGGAACCATCCTGGGGG 270
consensus_1635#1      TGCAGGGCTGCAGATAGACGACCGGATGCATCACCACGACGATCGGAACCATCCTGGGGG 299
                      ************** ** ******* **** ** *** ** * *****************

consensus_1635#0      TCACCTACGAGAGCACTCCTGGCCTGCTGCTCCACAGCCAAGTGCAAGCCGGTGACAGTC 330
consensus_1635#1      TCACGTACGAGACCAAAC-TGGTCTGCTGCTCGACAGTCGTGTGG--------------- 343
                      **** ******* **  * *** ********* **** *  ***                

consensus_1635#0      ACCGGTGCCCCGACCAGCAGGGTGACCTTGGCGGGAAG 368
consensus_1635#1      --------------------------------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)