These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 622 fasta sequence [GTAAAATTGTCTTTATTTTTACTACATGGCCAGCAAGTTGATGATGAAATACTAATTGATGTCATTTGATGTCCAAAATCTTAGAGACAAGAATGGAAATTAGGCAGATGTCATGTTACAGGTGTACTCTGAATGACCATGAGGCAGTAAATCATGGTAGAATGTTACAGTATCACAGAGCAGTGAATCAATCATAGTGATTTTAGTCCACTTCCTCAATGGTTGGCCCCTGGGAGCTGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATTCCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGGTGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGAGACGGTCTCCTCACACTTGTCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCGTCCTGCACGGTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTCCCCTTCTGACGGGTGTCCTCATCTTTGGATTTGTCGGGGTCCTGCACCATCCTCTCGATCTCTTCTTTGCTCAAACGGCCCTTATCGTTGGGGAAGGTGATCTTTGT] [+] EMBL CA332258 [GTAAAATTGTCTTTATTTTTACTACATGGCCAGCAAGTTGATGATGAAATACTAATTGATGTCATTTGATGTCCAAAATCTTAGAGACAAGAATGGAAATTAGGCAGATGTCATGTTACAGGTGTACTCTGAATGACCATGAGGCAGTAAATCATGGTAGAATGTTACAGTATCACAGAGCAGTGAATCAATCATAGTGATTTTAGTCCACTTCCTCAATGGTTTTTTTCTGGGAGCTGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATTCCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGGTGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGAGACGGTCTCCTCACACTTGTCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCGTCCTGCACGGTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTCCCCTTCTGACGGGTGTCCTCATCTTTGGATTTGTCGGCGTCCTGCACCATCCTCTCGATCTCTTCTTTGCTCACACGGCC ] [+] EMBL CA332256 [tTAAAATTGTCTTTATTTTTACTACATGGCCAGCAAGTTGATGATGAAATACTAATTGATGTCATTTGATGTCCAAAATCTTAGAGACAAGAATGGAAATTAGGCAGATGTCATGTTACAGGTGTACTCTGAATGACCATGAGGCAGTAAATCATGGTAGAATGTTACAGTATCACAGAGCAGTGAATCAATCATAGTGATTTTAGTCCACTTCCTCAATGGTTGGCCCCTGGGAGCTGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATTCCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGGTGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGAGACGGTCTCCTCACACTTGTCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCGTCCTGCACGGTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTCTCCTTCTGACGGGTGTCCTCATCTTTGTATTTGTCGGGGTCCTGCACCATCCTCTCGATCTCTTCTTTGCTCAAACGGCCCTTATCGTTGGGGAAGGTGATCTTTGT] consensusID : consensus_1636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [TACAAATATTTATTCAAAGGTGATATACAGAAAATAACGTGCTTCTATAATTCCCCTGTACAGAGTAGTTGACAACTTATTTAGGATTTTACAGCAATTGAAAAGCTCGTTTATGACTCAACATGTTTTTAGTCAAAACTTATACGATATATTAAACTATATTCAACAATTAACAAAATGAAAAAGTCCTTTTTAAAGTGTGTGAATGAATTTGAAGGGCGTCTTTAGTCCACTTCCTCAATGGTTGGCCCCTGGGAGCCGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATTCCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGGTGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGCGATGGTCTCCTCACACTTGCCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCCTCCTGCACGCTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTCTCCCTCTGCTGGTCGTCCTCAGCTTTGTATTTGTCGGCGTCCTGCAACATCCTCTCGATCTCTTCTTT] [+] EMBL CA331145 [TACAAATATTTATTCAAAGGTGATATACAGAAAATAACGTGCTTCTATAATTCCCCTGTACAGAGTAGTTGACAACTTATTTAGGATTTTACAGCAATTGAAAAGCTCGTTTATGACTCAACATGTTTTTAGTCAAAACTTATACGATATATTAAACTATATTCAACAATTAACAAAATGAAAAAGTCCTTTTTAAAGTGTGTGAATGAATTTGAAGGGCGTCTTTAGTCCACTTCCTCAATGGTTGGCCCCTGGGAGCCGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATTCCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGGTGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGCGATGGTCTCCTCACACTTGCCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCCTCCTGCACGCTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTCTCCCTCTGCTGGTCGTCCTCAGCTTTGTATTTGTCGGCGTCCTGCAACATCCTCTCGATCTCTTCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1636#0 -GTAAAATTGTCTTTATTTTTACTACATGGCCAGCAAGTTGATGATGAAATACTAATTGA 59 consensus_1636#1 TACAAATATTTATTCAAAGGTGATATACAGAAAATAACGTGCTTCTATAATTCCCCTGTA 60 *** * * ** * * ** * * * ** ** * * *** * * * consensus_1636#0 TGTCAT--TTGA-----TGTCCAAAATCTTAGAGACAAGAATGGAAATTAGGCAGATGTC 112 consensus_1636#1 CAGAGTAGTTGACAACTTATTTAGGATTTTACAGC---AATTGAAAAGCTCGTTTATGAC 117 * **** * * * ** *** ** * ** *** * *** * consensus_1636#0 ATGTTACAGGTGTACTCTGAATGACCATGAGGCAGTAAATCATGGTAGAATGTTA-CAGT 171 consensus_1636#1 TCAACATGTTTTTAGTCAAAACTTATACGATATATTAAACTATATTCAACAATTAACAAA 177 * * ** ** ** * ** * **** ** * * *** ** consensus_1636#0 ATCACAGAGCA-------------GTGAATCAATC---ATAGTGATTTTAGTCCACTTCC 215 consensus_1636#1 ATGAAAAAGTCCTTTTTAAAGTGTGTGAATGAATTTGAAGGGCGTCTTTAGTCCACTTCC 237 ** * * ** ****** *** * * * ************** consensus_1636#0 TCAATGGTTGGCCCCTGGGAGCTGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATT 275 consensus_1636#1 TCAATGGTTGGCCCCTGGGAGCCGCTCTGGGACTGTCCTCCTGGGTTGCCTCCAGGCATT 297 ********************** ************************************* consensus_1636#0 CCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGG 335 consensus_1636#1 CCTCCCTGATACAGCTTGCTGATGATGGGGTTGCACACTTTCTCCAGCTCTTTCTGCTGG 357 ************************************************************ consensus_1636#0 TGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGAGACGGTCTCCTCA 395 consensus_1636#1 TGTTGGTACTCTTCTTTATCCGCCAGCTGGTTGTTCTCCAGCCAGGCGATGGTCTCCTCA 417 ********************************************** ** ********** consensus_1636#0 CACTTGTCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCGTCC 455 consensus_1636#1 CACTTGCCGACGACCTTCTTCTTGTCCTCTTCACTAATTTTGTCCTTCAGGTTGTCCTCC 477 ****** ************************************************* *** consensus_1636#0 TGCACGGTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTC 515 consensus_1636#1 TGCACGCTGCTCTTCATGTTGAAGGCGTAGGACTCCAGAGAGTTCTTGGCAGCGATTTTC 537 ****** ***************************************************** consensus_1636#0 CCCTTCTGACGGGTGTCCTCATCTTTGGATTTGTCGGGGTCCTGCACCATCCTCTCGATC 575 consensus_1636#1 TCCCTCTGCTGGTCGTCCTCAGCTTTGTATTTGTCGGCGTCCTGCAACATCCTCTCGATC 597 ** **** ** ******* ***** ********* ******** ************* consensus_1636#0 TCTTCTTTGCTCAAACGGCCCTTATCGTTGGGGAAGGTGATCTTTGT 622 consensus_1636#1 TCTTCTTT--------------------------------------- 605 ******** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |