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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 550 fasta sequence
[GAGTGGAGCCTGCGGCTTAATTTGACTCAACGGGGGAAACCTCACCCGGCCCGGACACGGAAAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGCGCATGGCCGTTCTTAGTTGGAGGAGCGATTTGTCTGGGTAATTCCGATAACGAACGAGACTCCGGCATGCTAAATAGTTACGCGGGCCCGTGCGGACGGGGTCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACGCGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGAGGTCCGGGGCTGCACGCGCGCCACACTGAGCGGACCAGCGTGTGTCTACCCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCACTCGTGATGGGGATTGGGGATTGCAATTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGTCCTCGGATCGGCCCCGCCGAGGTCGGTCACGGCCGCC]
[+] EMBL CA845252 [GAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACACGGAAAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCCGGCATGCTAAATAGTTACGCGGCCCCGTGCGGTCGGCGTCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACGCGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGCGGACCAGCGTGTGTCTACCCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCACTCGTGATGGGGATTGGGGATTGCAATTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGTCCTCGGATCGGCCCCGCCGAGGTCGGTCACGGCCGCC]
[+] EMBL FR0059013 [ CTGCGGCTTAATTTGACTCAACGGGGGAAACCTCACCCGGCCCGGACACGTAAAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGCGCATGGCCGTTCTTAGTTGGAGGAGCGATTTGTCTGGGTAATTCCGATAACGAACGAGACTCCGGCATGCTAAATAGTTACGCGGGCCCGTGCGGACGGGGTCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACGCGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGAGGTCCGGGGCTGCAC ]
consensusID : consensus_1669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 181 fasta sequence
[ACACGGAAAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCCGGCATGCTAAATAGTTACGCGGCCCCGTGCGCCTTCTACATCGTTGAAATAAATATAGATTCTA]
[+] EMBL CA333589 [ACACGGAAAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCCGGCATGCTAAATAGTTACGCGGCCCCGTGCGCCTTCTACATCGTTGAAATAAATATAGATTCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1669#0 GAGTGGAGCCTGCGGCTTAATTTGACTCAACGGGGGAAACCTCACCCGGCCCGGACACGG 60
consensus_1669#1 ------------------------------------------------------ACACGG 6
******
consensus_1669#0 AAAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGCGCATGGCCGTTC 120
consensus_1669#1 AAAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGTGCATGGCCGTTC 66
*********************************************** ************
consensus_1669#0 TTAGTTGGAGGAGCGATTTGTCTGGGTAATTCCGATAACGAACGAGACTCCGGCATGCTA 180
consensus_1669#1 TTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCCGGCATGCTA 126
******** **************** **********************************
consensus_1669#0 AATAGTTACGCGGGCCCGTGCGGACGGGGTCCAACTTCTTAGAGGGACAAGTGGCGTTCA 240
consensus_1669#1 AATAGTTACGCGGCCCCGTGC-----GCCTTCTACATCGTTGAAATAAATATAGATTCTA 181
************* ******* * * * ** ** * ** * * * * * *
consensus_1669#0 GCCACGCGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGAGGTCCGGGGCTGCACGC 300
consensus_1669#1 ------------------------------------------------------------
consensus_1669#0 GCGCCACACTGAGCGGACCAGCGTGTGTCTACCCTGCGCCGAGAGGCGCGGGTAACCCGC 360
consensus_1669#1 ------------------------------------------------------------
consensus_1669#0 TGAACCCCACTCGTGATGGGGATTGGGGATTGCAATTATTTCCCATGAACGAGGAATTCC 420
consensus_1669#1 ------------------------------------------------------------
consensus_1669#0 CAGTAAGCGCGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCC 480
consensus_1669#1 ------------------------------------------------------------
consensus_1669#0 GTCGCTACTACCGATTGGATGGTTTAGTGAGGTCCTCGGATCGGCCCCGCCGAGGTCGGT 540
consensus_1669#1 ------------------------------------------------------------
consensus_1669#0 CACGGCCGCC 550
consensus_1669#1 ----------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |