These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 557 fasta sequence [ACTTTAGTTGCTAACATTCAGCGTCACAAATCACTTTATTTTTCATATACAGTAATATGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCCAGATGTTAAACTTGACCTTGTTTTGTAGCAACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAACCCGTCAGGTGAGCGTCACACTTGACCACATAGGTGAAGTAGAGAACCCCTCTCTTCAGCTGGCAGCTGAAAGAGTGTGTTCCCCTCTCGGGAACGGCGATGCATCTTCCAGCAACATCGTTGTAGAACACGTCTCTGTCCCAGACTTCAAGCCTCAGCTCCAGACCCACCTCCACTGACCCCAAGTCGTAAACGGCGTTCCACACTGGTTCGTCGTCGTCCATCACCGTCTCTGTTTCCTCGTAGATGCCGTTGTAGAAGATCTTCACGTAGGCGTCCGTCTTCGTGAAGGTGTCGGCGTTCAGGCCCGCAGCTCTGTGGATCATCAGTTTGAGAGTTCCTCTGCCAGACCGTAGGGGGCAGCAGTGGTGATCCAGGTT] [+] EMBL CA329703 [ACTTTAGTTGCTAACATTCAGCGTCACAAATCACTTTATTTTTCATATACAGTAATATGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCCAGATGTTAAACTTGACCTTGTTTTGTAGCAACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAACCCGTCAGGTGAGCGTCACACTTGACCACATAGGTGAAGTAGAGAACCCCTCTCTTCAGCTGGCAGCTGAAAGAGTGTGTTCCCCTCTCGGGAACGGCGATGCATCTTCCAGCAACATCGTTGTAGAACACGTCTCTGTCCCAGACTTCAAGCCTCAGCTCCAGACCCACCTCCACTGACCCCAAGTCGTAAACGGCGTTCCACACTGGTTCGTCGTCGTCCATCACCGTCTCTGTTTCCTCGTAGATGCCGTTGTAGAAGATCTTCACGTAGGCGTCCGTCTTCGTGAAGGTGTCGGCGTTCAGGCCCGCAGCTCTGTGGATCATCAGTTTGAGAGTTCCTCTGCCAGACCGTAGGGGGCAGCAGTGGTGATCCAGGTT] [-] EMBL FR0056448 [ TCACTTTATTTTTCATATACAGTAATATGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCCAGATGTTAAACTTGACCTTGTTTTGTAGCAACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAACCCGTCAGGTGAGCGTCACACTTGACCACATAGGTGAAGTAGAGAACCCCTCTCTTCAGCTGGCAGCTGAAAGAGTGTGTTCCCCTCTCGGGAACGGCGATGCATCTTCCAGCAACATCGTTGTAGAACACGTCTCTGTCCCAGACTTCAAGCCTCAGCTCCAGACCCACCTCCACTGACCCCAAGTCGTAAACGGCGTTCCACACTGGTTCGTCGTCGTCCATCACCGTCTCTGTTTCCTCGTA ] consensusID : consensus_1671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence [AGGGGTTTAGTTGCTAACATTCAGCATCACAAATCACTTTATTTTGCATATACAGTAATATGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCTAGATGTTGAACTTGACTTTGTTTTGTAGCGACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAACCCGTCACACCCCCTACACCCGACCACATAGGTGTAGTAGAGAACCCCAGTATTCAGCTGGCAGCCTGAAGAGTGTGTTCCCCTCTCGGGAACGGTCATGCATTTTCCAACAAATCTGTGCACGTCTCTGTCCCAGACTTCAAACTTCAGCTTCAGACCCACCTTCACTGGCCCCAAGTCGAAAACGGCGTTCCACACTGGGTTGTTGTTGTTCATCACCGTCTCTGTTTCGTCGTAGAGGCCGTTGTAGAAGATCTTCACGTAGGCGTCCGCCTTCGTGGAGGTGTCGGCGTTCAGGCCCACAGCTCTGTGGATCGTCACTTTGAGAGTTCCTCTGCCGGGGGGGCAGCAGTGGTGATCCAGGTT] [+] EMBL CA329581 [AGGGGTTTAGTTGCTAACATTCAGCATCACAAATCACTTTATTTTGCATATACAGTAATATGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCTAGATGTTGAACTTGACTTTGTTTTGTAGCGACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAACCCGTCACACCCCCTACACCCGACCACATAGGTGTAGTAGAGAACCCCAGTATTCAGCTGGCAGCCTGAAGAGTGTGTTCCCCTCTCGGGAACGGTCATGCATTTTCCAACAAATCTGTGCACGTCTCTGTCCCAGACTTCAAACTTCAGCTTCAGACCCACCTTCACTGGCCCCAAGTCGAAAACGGCGTTCCACACTGGGTTGTTGTTGTTCATCACCGTCTCTGTTTCGTCGTAGAGGCCGTTGTAGAAGATCTTCACGTAGGCGTCCGCCTTCGTGGAGGTGTCGGCGTTCAGGCCCACAGCTCTGTGGATCGTCACTTTGAGAGTTCCTCTGCCGGGGGGGCAGCAGTGGTGATCCAGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1671#0 ---ACTTTAGTTGCTAACATTCAGCGTCACAAATCACTTTATTTTTCATATACAGTAATA 57 consensus_1671#1 AGGGGTTTAGTTGCTAACATTCAGCATCACAAATCACTTTATTTTGCATATACAGTAATA 60 ******************** ******************* ************** consensus_1671#0 TGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCCAGATGTTAA 117 consensus_1671#1 TGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCTAGATGTTGA 120 ************************************************** ******* * consensus_1671#0 ACTTGACCTTGTTTTGTAGCAACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAA 177 consensus_1671#1 ACTTGACTTTGTTTTGTAGCGACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAA 180 ******* ************ *************************************** consensus_1671#0 CCCGTCAGGTGAGCGTCACACTTGACCACATAGGTGAAGTAGAGAACCCCTCTCTTCAGC 237 consensus_1671#1 CCCGTCACACC--CCCTACACCCGACCACATAGGTGTAGTAGAGAACCCCAGTATTCAGC 238 ******* * **** ************* ************* * ****** consensus_1671#0 TGGCAGCTGAAAGAGTGTGTTCCCCTCTCGGGAACGGCGATGCATCTTCCAGCAACATCG 297 consensus_1671#1 TGGCAGCCTGAAGAGTGTGTTCCCCTCTCGGGAACGGTCATGCATTTTCCAACAAATCTG 298 ******* *************************** ****** ***** *** * consensus_1671#0 TTGTAGAACACGTCTCTGTCCCAGACTTCAAGCCTCAGCTCCAGACCCACCTCCACTGAC 357 consensus_1671#1 T------GCACGTCTCTGTCCCAGACTTCAAACTTCAGCTTCAGACCCACCTTCACTGGC 352 * *********************** * ****** *********** ***** * consensus_1671#0 CCCAAGTCGTAAACGGCGTTCCACACTGGTTCGTCGTCGTCCATCACCGTCTCTGTTTCC 417 consensus_1671#1 CCCAAGTCGAAAACGGCGTTCCACACTGGGTTGTTGTTGTTCATCACCGTCTCTGTTTCG 412 ********* ******************* * ** ** ** ****************** consensus_1671#0 TCGTAGATGCCGTTGTAGAAGATCTTCACGTAGGCGTCCGTCTTCGTGAAGGTGTCGGCG 477 consensus_1671#1 TCGTAGAGGCCGTTGTAGAAGATCTTCACGTAGGCGTCCGCCTTCGTGGAGGTGTCGGCG 472 ******* ******************************** ******* *********** consensus_1671#0 TTCAGGCCCGCAGCTCTGTGGATCATCAGTTTGAGAGTTCCTCTGCCAGACCGTAGGGGG 537 consensus_1671#1 TTCAGGCCCACAGCTCTGTGGATCGTCACTTTGAGAGTTCCTCTGCCGG------GGGGG 526 ********* ************** *** ****************** * ***** consensus_1671#0 CAGCAGTGGTGATCCAGGTT 557 consensus_1671#1 CAGCAGTGGTGATCCAGGTT 546 ******************** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |