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Takifugu rubripes
cluster # 1671 cluster # 1671       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1671#0 length = 557 sequences # 2  
consensus_1671#1 length = 546 sequences # 1  

consensusID : consensus_1671#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 557
fasta sequence
                              [ACTTTAGTTGCTAACATTCAGCGTCACAAATCACTTTATTTTTCATATACAGTAATATGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCCAGATGTTAAACTTGACCTTGTTTTGTAGCAACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAACCCGTCAGGTGAGCGTCACACTTGACCACATAGGTGAAGTAGAGAACCCCTCTCTTCAGCTGGCAGCTGAAAGAGTGTGTTCCCCTCTCGGGAACGGCGATGCATCTTCCAGCAACATCGTTGTAGAACACGTCTCTGTCCCAGACTTCAAGCCTCAGCTCCAGACCCACCTCCACTGACCCCAAGTCGTAAACGGCGTTCCACACTGGTTCGTCGTCGTCCATCACCGTCTCTGTTTCCTCGTAGATGCCGTTGTAGAAGATCTTCACGTAGGCGTCCGTCTTCGTGAAGGTGTCGGCGTTCAGGCCCGCAGCTCTGTGGATCATCAGTTTGAGAGTTCCTCTGCCAGACCGTAGGGGGCAGCAGTGGTGATCCAGGTT]

[+] EMBL CA329703             [ACTTTAGTTGCTAACATTCAGCGTCACAAATCACTTTATTTTTCATATACAGTAATATGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCCAGATGTTAAACTTGACCTTGTTTTGTAGCAACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAACCCGTCAGGTGAGCGTCACACTTGACCACATAGGTGAAGTAGAGAACCCCTCTCTTCAGCTGGCAGCTGAAAGAGTGTGTTCCCCTCTCGGGAACGGCGATGCATCTTCCAGCAACATCGTTGTAGAACACGTCTCTGTCCCAGACTTCAAGCCTCAGCTCCAGACCCACCTCCACTGACCCCAAGTCGTAAACGGCGTTCCACACTGGTTCGTCGTCGTCCATCACCGTCTCTGTTTCCTCGTAGATGCCGTTGTAGAAGATCTTCACGTAGGCGTCCGTCTTCGTGAAGGTGTCGGCGTTCAGGCCCGCAGCTCTGTGGATCATCAGTTTGAGAGTTCCTCTGCCAGACCGTAGGGGGCAGCAGTGGTGATCCAGGTT]
[-] EMBL FR0056448            [                              TCACTTTATTTTTCATATACAGTAATATGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCCAGATGTTAAACTTGACCTTGTTTTGTAGCAACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAACCCGTCAGGTGAGCGTCACACTTGACCACATAGGTGAAGTAGAGAACCCCTCTCTTCAGCTGGCAGCTGAAAGAGTGTGTTCCCCTCTCGGGAACGGCGATGCATCTTCCAGCAACATCGTTGTAGAACACGTCTCTGTCCCAGACTTCAAGCCTCAGCTCCAGACCCACCTCCACTGACCCCAAGTCGTAAACGGCGTTCCACACTGGTTCGTCGTCGTCCATCACCGTCTCTGTTTCCTCGTA                                                                                                                                       ]


>consensus_1671#0 ACTTTAGTTGCTAACATTCAGCGTCACAAATCACTTTATTTTTCATATACAGTAATATGG TCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCCAGATGTTAAACT TGACCTTGTTTTGTAGCAACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAACCC GTCAGGTGAGCGTCACACTTGACCACATAGGTGAAGTAGAGAACCCCTCTCTTCAGCTGG CAGCTGAAAGAGTGTGTTCCCCTCTCGGGAACGGCGATGCATCTTCCAGCAACATCGTTG TAGAACACGTCTCTGTCCCAGACTTCAAGCCTCAGCTCCAGACCCACCTCCACTGACCCC AAGTCGTAAACGGCGTTCCACACTGGTTCGTCGTCGTCCATCACCGTCTCTGTTTCCTCG TAGATGCCGTTGTAGAAGATCTTCACGTAGGCGTCCGTCTTCGTGAAGGTGTCGGCGTTC AGGCCCGCAGCTCTGTGGATCATCAGTTTGAGAGTTCCTCTGCCAGACCGTAGGGGGCAG CAGTGGTGATCCAGGTT



consensusID : consensus_1671#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 546
fasta sequence
                              [AGGGGTTTAGTTGCTAACATTCAGCATCACAAATCACTTTATTTTGCATATACAGTAATATGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCTAGATGTTGAACTTGACTTTGTTTTGTAGCGACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAACCCGTCACACCCCCTACACCCGACCACATAGGTGTAGTAGAGAACCCCAGTATTCAGCTGGCAGCCTGAAGAGTGTGTTCCCCTCTCGGGAACGGTCATGCATTTTCCAACAAATCTGTGCACGTCTCTGTCCCAGACTTCAAACTTCAGCTTCAGACCCACCTTCACTGGCCCCAAGTCGAAAACGGCGTTCCACACTGGGTTGTTGTTGTTCATCACCGTCTCTGTTTCGTCGTAGAGGCCGTTGTAGAAGATCTTCACGTAGGCGTCCGCCTTCGTGGAGGTGTCGGCGTTCAGGCCCACAGCTCTGTGGATCGTCACTTTGAGAGTTCCTCTGCCGGGGGGGCAGCAGTGGTGATCCAGGTT]

[+] EMBL CA329581             [AGGGGTTTAGTTGCTAACATTCAGCATCACAAATCACTTTATTTTGCATATACAGTAATATGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCTAGATGTTGAACTTGACTTTGTTTTGTAGCGACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAACCCGTCACACCCCCTACACCCGACCACATAGGTGTAGTAGAGAACCCCAGTATTCAGCTGGCAGCCTGAAGAGTGTGTTCCCCTCTCGGGAACGGTCATGCATTTTCCAACAAATCTGTGCACGTCTCTGTCCCAGACTTCAAACTTCAGCTTCAGACCCACCTTCACTGGCCCCAAGTCGAAAACGGCGTTCCACACTGGGTTGTTGTTGTTCATCACCGTCTCTGTTTCGTCGTAGAGGCCGTTGTAGAAGATCTTCACGTAGGCGTCCGCCTTCGTGGAGGTGTCGGCGTTCAGGCCCACAGCTCTGTGGATCGTCACTTTGAGAGTTCCTCTGCCGGGGGGGCAGCAGTGGTGATCCAGGTT]


>consensus_1671#1 AGGGGTTTAGTTGCTAACATTCAGCATCACAAATCACTTTATTTTGCATATACAGTAATA TGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCTAGATGTTGA ACTTGACTTTGTTTTGTAGCGACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAA CCCGTCACACCCCCTACACCCGACCACATAGGTGTAGTAGAGAACCCCAGTATTCAGCTG GCAGCCTGAAGAGTGTGTTCCCCTCTCGGGAACGGTCATGCATTTTCCAACAAATCTGTG CACGTCTCTGTCCCAGACTTCAAACTTCAGCTTCAGACCCACCTTCACTGGCCCCAAGTC GAAAACGGCGTTCCACACTGGGTTGTTGTTGTTCATCACCGTCTCTGTTTCGTCGTAGAG GCCGTTGTAGAAGATCTTCACGTAGGCGTCCGCCTTCGTGGAGGTGTCGGCGTTCAGGCC CACAGCTCTGTGGATCGTCACTTTGAGAGTTCCTCTGCCGGGGGGGCAGCAGTGGTGATC CAGGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1671#0      ---ACTTTAGTTGCTAACATTCAGCGTCACAAATCACTTTATTTTTCATATACAGTAATA 57
consensus_1671#1      AGGGGTTTAGTTGCTAACATTCAGCATCACAAATCACTTTATTTTGCATATACAGTAATA 60
                           ******************** ******************* **************

consensus_1671#0      TGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCCAGATGTTAA 117
consensus_1671#1      TGGTCCAAGGAAAAAAAGAACATTGTTATGATCAGGTTATAGACTGTATCTAGATGTTGA 120
                      ************************************************** ******* *

consensus_1671#0      ACTTGACCTTGTTTTGTAGCAACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAA 177
consensus_1671#1      ACTTGACTTTGTTTTGTAGCGACCTACTCGGCGCTGGGAGAGTAGCGCCCACACCTAAAA 180
                      ******* ************ ***************************************

consensus_1671#0      CCCGTCAGGTGAGCGTCACACTTGACCACATAGGTGAAGTAGAGAACCCCTCTCTTCAGC 237
consensus_1671#1      CCCGTCACACC--CCCTACACCCGACCACATAGGTGTAGTAGAGAACCCCAGTATTCAGC 238
                      *******      *   ****  ************* *************  * ******

consensus_1671#0      TGGCAGCTGAAAGAGTGTGTTCCCCTCTCGGGAACGGCGATGCATCTTCCAGCAACATCG 297
consensus_1671#1      TGGCAGCCTGAAGAGTGTGTTCCCCTCTCGGGAACGGTCATGCATTTTCCAACAAATCTG 298
                      *******   ***************************  ****** ***** ***    *

consensus_1671#0      TTGTAGAACACGTCTCTGTCCCAGACTTCAAGCCTCAGCTCCAGACCCACCTCCACTGAC 357
consensus_1671#1      T------GCACGTCTCTGTCCCAGACTTCAAACTTCAGCTTCAGACCCACCTTCACTGGC 352
                      *       *********************** * ****** *********** ***** *

consensus_1671#0      CCCAAGTCGTAAACGGCGTTCCACACTGGTTCGTCGTCGTCCATCACCGTCTCTGTTTCC 417
consensus_1671#1      CCCAAGTCGAAAACGGCGTTCCACACTGGGTTGTTGTTGTTCATCACCGTCTCTGTTTCG 412
                      ********* ******************* * ** ** ** ****************** 

consensus_1671#0      TCGTAGATGCCGTTGTAGAAGATCTTCACGTAGGCGTCCGTCTTCGTGAAGGTGTCGGCG 477
consensus_1671#1      TCGTAGAGGCCGTTGTAGAAGATCTTCACGTAGGCGTCCGCCTTCGTGGAGGTGTCGGCG 472
                      ******* ******************************** ******* ***********

consensus_1671#0      TTCAGGCCCGCAGCTCTGTGGATCATCAGTTTGAGAGTTCCTCTGCCAGACCGTAGGGGG 537
consensus_1671#1      TTCAGGCCCACAGCTCTGTGGATCGTCACTTTGAGAGTTCCTCTGCCGG------GGGGG 526
                      ********* ************** *** ****************** *      *****

consensus_1671#0      CAGCAGTGGTGATCCAGGTT 557
consensus_1671#1      CAGCAGTGGTGATCCAGGTT 546
                      ********************




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)