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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1673#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 602 fasta sequence
[TTTTTTTTTTTTTTTTTTAGGAGGGGATCTGTGGAGTTAGCTGCTGTTGTCAGACACCACAACTGGTTTATTTTCAGAACGCTCTCAATCTGGAACAAACACAATCAGGCAAACGGCGTCTCAACTCCGGTCGAATCCAAACTACTTCTTCTCGTGACACAAGCAATTATGCTCCATTATTGAGTGGACTTCAATTCCTCATCAGACACTGTGTGTGAGTTTTCCCCACTCAGGCGCTCCTGACTGGACTGGCGGTTGCCGTCACTGGATTTGATGACGCCAGCGTAGTCATGGATCCCCACCTCAAGGTTCTTGGCCCTCAGGGCAGCGTTATGCAGCTTCTCCAGAAAATCCGGCATGCCGCTCGACACCATCCAGCTCACGCAGTAGCGAGGAAAGACCGTCTGAGGATTGTCACTGTACGTCAGCAGGTAATCAAATCCATTCTCATCGAATGATTTGTGAGGGCGGATGACCATCTTTGATTGGTACGAATGGACCCTTACGAACTCCTGAGTCTCGGGGACTCTGGGGTGCTGCACAGCTCTGGACACCAGGATCATCAGGTTGTTGTCGACATCAACATCATAGCGGCGAACATA]
[+] EMBL CA331310 [TTTTTTTTTTTTTTTTTTAGGAGGGGATCTGTGGAGTTAGCTGCTGTTGTCAGACACCACAACTGGTTTATTTTCAGAACGCTCTCAATCTGGAACAAACACAATCAGGCAAACGGCGTCTCAACTCCGGTCGAATCCAAACTACTTCTTCTCGTGACACAAGCAATTATGCTCCATTATTGAGTGGACTTCAATTCCTCATCAGACACTGTGTGTGAGTTTTCCCCACTCAGGCGCTCCTGACTGGACTGGCGGTTGCCGTCACTGGATTTGATGACGCCAGCGTAGTCATGGATCCCCACCTCAAGGTTCTTGGCCCTCAGGGCAGCGTTATGCAGCTTCTCCAGAAAATCCGGCATGCCGCTCGACACCATCCAGCTCACGCAGTAGCGAGGAAAGACCGTCTGAGGATTGTCACTGTACGTCAGCAGGTAATCAAATCCATTCTCATCGAATGATTTGTGAGGGCGGATGACCATCTTTGATTGGTACGAATGGACCCTTACGAACTCCTGAGTCTCGGGGACTCTGGGGTGCTGCACAGCTCTGGACACCAGGATCATCAGGTTGTTGTCCACATCAACATCATAGCGGCGAACATA]
[+] EMBL CA329750 [ TCCGGCATGCCGCTCGACACCATCCAGCTCACGCAGTAACGAGGAAAGACCGTCTGAGGATTGTCACTGTACGTCAGCAGGTAATCAAATCCATTCTCATCGAATGATTTGTGAGGGCGGATGACCATCTTTGATTGGTACCAATGGACCCTTACGAACTCCTGAGTCTCGGGGACTCTGGGGTGCTGCACAGCTCTGGACACCAAGATCATCAGGTTGTTGTCGACATCAACATCATAGCGTCGAACATA]
consensusID : consensus_1673#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence
[ATGAATGACAAACTGTACCATCTAATGTAGGCAGCAACTTCATCTCGCTACACAATGTACCAAAAGGTTGGCCGGACGGTTTAAATAGGGCGTAAGTGCCAATGCTAACGCGACCACAGATACTCCCGGCGGTGGCGACCTCACGCGTAGATCTGTCCTGAACCACCTGTGTGTGAGTTTTCCCCACTCAGGCGCTCCTGACTGGACTGGCGGTTGCCGTCACTGGATTTGATGACGCCAGCGTAGTCATGGATCCCCACCTCAAGGTTCTTGGCCCTCAGGGCAGCGTTATGCAGCTTCTCCAGAAAATCCGGCATGCCGCTCGACACCATCCAGCTCACGCAGTAGCGAGGAAAGACCGTCTGAGGATTGTCACTGTACGTCAGCAGGTAATCAAATCCATTCTCATCGAATGATTTGTGAGGGCGGATGACCATCTTTGATTGGTACGAATGGACCCTTACAAACTCCTGAGTCTCGGGGACTCTGGGGGTGCTGCACCACTCTGGACACCAGGATCATCAGGTTGNTGTCGACATCAACATCATAGCGTCGAACATA]
[+] EMBL CA329560 [ATGAATGACAAACTGTACCATCTAATGTAGGCAGCAACTTCATCTCGCTACACAATGTACCAAAAGGTTGGCCGGACGGTTTAAATAGGGCGTAAGTGCCAATGCTAACGCGACCACAGATACTCCCGGCGGTGGCGACCTCACGCGTAGATCTGTCCTGAACCACCTGTGTGTGAGTTTTCCCCACTCAGGCGCTCCTGACTGGACTGGCGGTTGCCGTCACTGGATTTGATGACGCCAGCGTAGTCATGGATCCCCACCTCAAGGTTCTTGGCCCTCAGGGCAGCGTTATGCAGCTTCTCCAGAAAATCCGGCATGCCGCTCGACACCATCCAGCTCACGCAGTAGCGAGGAAAGACCGTCTGAGGATTGTCACTGTACGTCAGCAGGTAATCAAATCCATTCTCATCGAATGATTTGTGAGGGCGGATGACCATCTTTGATTGGTACGAATGGACCCTTACAAACTCCTGAGTCTCGGGGACTCTGGGGGTGCTGCACCACTCTGGACACCAGGATCATCAGGTTGNTGTCGACATCAACATCATAGCGTCGAACATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1673#0 TTTTTTTTTTTTTTTTTTAGGAGGGGATCTGTGGAGTTAGCTGCTGTTGTCAGACACCAC 60
consensus_1673#1 ----------------ATGAATGACAAACTGTA---CCATCTAATGTAGGCAGCAACTTC 41
* * * **** * ** *** * *** ** *
consensus_1673#0 AACTGGTTTATTTTCAGAACGCTCTCAATCTGGAACAAACACAATCAGGCAAACGGCGTC 120
consensus_1673#1 ATCTCGCTA-----CACAATGTACCAAA----AGGTTGGCCGGACGGTTTAAATAGGGCG 92
* ** * * ** ** * * ** * * *** * *
consensus_1673#0 TCAACTCCGGTCGAATCCAAACTACTTCTTCTCGTGACACAAGCAATTATGCTCCATTAT 180
consensus_1673#1 TAAGTGCCAATGCTAACGCGACCACAGATACTCCCGGCGGTGGCGACCTCACGC------ 146
* * ** * * * ** ** * *** * * ** * * *
consensus_1673#0 TGAGTGGACTTCAATTCCTCATCAGACACTGTGTGTGAGTTTTCCCCACTCAGGCGCTCC 240
consensus_1673#1 ---GTAGATCT--GTCCTGAACCAC---CTGTGTGTGAGTTTTCCCCACTCAGGCGCTCC 198
** ** * * * * ** ********************************
consensus_1673#0 TGACTGGACTGGCGGTTGCCGTCACTGGATTTGATGACGCCAGCGTAGTCATGGATCCCC 300
consensus_1673#1 TGACTGGACTGGCGGTTGCCGTCACTGGATTTGATGACGCCAGCGTAGTCATGGATCCCC 258
************************************************************
consensus_1673#0 ACCTCAAGGTTCTTGGCCCTCAGGGCAGCGTTATGCAGCTTCTCCAGAAAATCCGGCATG 360
consensus_1673#1 ACCTCAAGGTTCTTGGCCCTCAGGGCAGCGTTATGCAGCTTCTCCAGAAAATCCGGCATG 318
************************************************************
consensus_1673#0 CCGCTCGACACCATCCAGCTCACGCAGTAGCGAGGAAAGACCGTCTGAGGATTGTCACTG 420
consensus_1673#1 CCGCTCGACACCATCCAGCTCACGCAGTAGCGAGGAAAGACCGTCTGAGGATTGTCACTG 378
************************************************************
consensus_1673#0 TACGTCAGCAGGTAATCAAATCCATTCTCATCGAATGATTTGTGAGGGCGGATGACCATC 480
consensus_1673#1 TACGTCAGCAGGTAATCAAATCCATTCTCATCGAATGATTTGTGAGGGCGGATGACCATC 438
************************************************************
consensus_1673#0 TTTGATTGGTACGAATGGACCCTTACGAACTCCTGAGTCTCGGGGACTCTGGGG-TGCTG 539
consensus_1673#1 TTTGATTGGTACGAATGGACCCTTACAAACTCCTGAGTCTCGGGGACTCTGGGGGTGCTG 498
************************** *************************** *****
consensus_1673#0 CACAGCTCTGGACACCAGGATCATCAGGTTGTTGTCGACATCAACATCATAGCGGCGAAC 599
consensus_1673#1 CACCACTCTGGACACCAGGATCATCAGGTTGNTGTCGACATCAACATCATAGCGTCGAAC 558
*** ************************** ********************** *****
consensus_1673#0 ATA 602
consensus_1673#1 ATA 561
***
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |