These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1678#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 649 fasta sequence [CCCCGACTGGATTTTTGGGAGTCGATCTCACCTCTCCTCACTTTGCCTTGATTCTGCTGAGAACAGGCTCCCTGCTTGCAGCACCATGAAGTCGGCCTGTCTCTCTCTGCTTCTGGTCACCGCCTGCTGGGCCCTGCCCTTCCGCCAGTCCGGCTTCTTAGACTTCATGATGGAGGACGATGCTGGATCCGGTGTACGTGAGGTGCCCCCTGATCCAGTGATCCCCGCAGTGTATCCAATGCCTGCAATACCCAAGTGCCCCTTCAGATGCCAGTGCCACCTGAGAGTGGTCCAATGCTCAGACCTCGGTTTGAAGGAAGTTCCTGAGGATATCCCCGATGATACTATCCTGCTGGACCTGCAGAACAACAAGATAGCTGAAATCAAGGAGAATGATTTCAAGAACCTTAAGGGACTCCAAACTCTGATCCTGGTGAACAACAAGATCAGCGCCATCCACAACAAGGCCCTCAGCCCCCTGACCAAGCTGCAGCGTCTCTACCTGTCCAGGAATGCACTCAAGGACATGCCCCCCAACATGCCCAAGAGCCTGCAGGAGCTGCGCATCCATGACAATGCCATCACCAAGATCAAAAAGGCCACTTTCCANGGCATGTCCAACATCATCGTCATGGAGCTTGGCTCCAAC] [+] EMBL CA333235 [CCCCGACTGGATTTTTGGGAGTCGATCTCACCTCTCCTCACTTTGCCTTGATTCTGCTGAGAACAGGCTCCCTGCTTGCAGCACCATGAAGTCGGCCTGTCTCTCTCTGCTTCTGGTCACCGCCTGCTGGGCCCTGCCCTTCCGCCAGTCCGGCTTCTTAGACTTCATGATGGAGGACGATGCTGGATCCGGTGTACGTGAGGTGCCCCCTGATCCAGTGATCCCCGCAGTGTATCCAATGCCTGCAATACCCAAGTGCCCCTTCAGATGCCAGTGCCACCTGAGAGTGGTCCAATGCTCAGACCTCGGTTTGAAGGAAGTTCCTGAGGATATCCCCGATGATACTATCCTGCTGGACCTGCAGAACAACAAGATAGCTGAAATCAAGGAGAATGATTTCAAGAACCTTAAGGGACTCCAAACTCTGATCCTGGTGAACAACAAGATCAGCGCCATCCACAACAAGGCCCTCAGCCCCCTGACCAAGCTGCAGCGTCTCTACCTGTCCAGGAATGCACTCAAGGACATGCCCCCCAACATGCCCAAGAGCCTGCAGGAGCTGCGCATCCATGACAATGCCATCACCAAGATCAAAAAGGCCACTTTTCAGGGCATGTCCAACATCATC ] [+] EMBL CA330973 [ TCGATCTCACCTCTCCTCACTTTGCCTTGATTCTGCTGAGAACAGGCTCCCTGCTTGCAGCACCATGAAGTCGGCCTGTCTCTCTCTGCTTCTGGTCACCGCCTGCTGGGCCCTGCCCTTCCGCCAGTCCGGCTTCTTAGACTTCATGATGGAGGACGATGCTGGATCCGGTGTACGTGAGGTGCCCCCTGATCCAGTGATCCCCGCAGTGTATCCAATGCCTGCAATACCCAAGTGCCCCTTCAGATGCCAGTGCCACCTGAGAGTGGTCCAATGCTCAGACCTCGGTTTGAAGGAAGTTCCTGAGGATATCCCCGATGATACTATCCTGCTGGACCTGCAGAACAACAAGATAGCTGAAATCAAGGAGAATGATTTCAAGAACCTTAAGGGACTCCAAACTCTGATCCTGGTGAACAACAAGATCAGCGCCATCCACAACAAGGCCCTCAGCCCCCTGACCAAGCTGCAGCGTCTCTACCTGTCCAGGAATGCACTCAAGGACATGCCCCCCAACATGCCCAAGAGCCTGCAGGAGCTGCGCATCCATGACAATGCCATCACCAAGATCAAAAAGGCCACTTTCCANGGCATGTCCAACATCATCGTCATGGAGCTTGGCTCCAAC] consensusID : consensus_1678#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [GAGCTGACATCCATGACAATGCCATCACCAGGAGCAAAAAGGCCACTTTCCAGGGCATGTCCAACATCATCGTCATGGAGCTTGGCTCCAACCCTCTGAACAGGGCAGGAATCGACGAAGGCGCTTTTGCCGACCTGAAGAGGGTCTCTTACATCCGAATTGCAGATACCAACATTACAGAGATACCCAAAGGTCTGCCTAGGCTCTCTCTCTGAGCTCCATCTGGATGCAAACAAAATCACCAAGGTGACGGCTGCCAGTGTCCAGGGTCTGAAGAACCTGGCCAAACTTGGCCTGAGCGACAATGACATCAGCTCTGTGGAAAATGGCACAATGGCTAATGTTCCCCACCTGCGGGACGTGCACCTCGACAACAACGCTCTGACTAGCGTTCCTTCTGG] [+] EMBL FR0062965 [GAGCTGACATCCATGACAATGCCATCACCAGGAGCAAAAAGGCCACTTTCCAGGGCATGTCCAACATCATCGTCATGGAGCTTGGCTCCAACCCTCTGAACAGGGCAGGAATCGACGAAGGCGCTTTTGCCGACCTGAAGAGGGTCTCTTACATCCGAATTGCAGATACCAACATTACAGAGATACCCAAAGGTCTGCCTAGGCTCTCTCTCTGAGCTCCATCTGGATGCAAACAAAATCACCAAGGTGACGGCTGCCAGTGTCCAGGGTCTGAAGAACCTGGCCAAACTTGGCCTGAGCGACAATGACATCAGCTCTGTGGAAAATGGCACAATGGCTAATGTTCCCCACCTGCGGGACGTGCACCTCGACAACAACGCTCTGACTAGCGTTCCTTCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1678#0 CCCCGACTGGATTTTTGGGAGTCGATCTCACCTCTCCTCACTTTGCCTTGATTCTGCTGA 60 consensus_1678#1 ------------------------------------------------------------ consensus_1678#0 GAACAGGCTCCCTGCTTGCAGCACCATGAAGTCGGCCTGTCTCTCTCTGCTTCTGGTCAC 120 consensus_1678#1 ------------------------------------------------------------ consensus_1678#0 CGCCTGCTGGGCCCTGCCCTTCCGCCAGTCCGGCTTCTTAGACTTCATGATGGAGGACGA 180 consensus_1678#1 GAGCTGACATCCATGACAATGCCATCA--CCAGGAGCAAAAAGGCCACTTTCCAGGGC-A 57 *** * * * ** ** ** * * * * ** * *** * * consensus_1678#0 TGCTGGATCCGGTGTACGTGAGGTGCCCCCTGATCCAGTGATCCCCGCAGTGTATCCAAT 240 consensus_1678#1 TGTCCAACATCATCGTCATGGAG----CTTGGCTCCAACCCTCTGAACAGGGCAGGAATC 113 ** * * * ** * * * **** ** *** * * * consensus_1678#0 GCCTGCAATACCCAAGTGCCCCTTCAGATGCCAGTGCCACCTGAGAGTGGTCCAATGCTC 300 consensus_1678#1 GACGAAGGCGCTTTTGCCGACCTGAAGA-----GGGTCTCTTA-----CATCCGAATTGC 163 * * * * *** *** * * * * * *** * * consensus_1678#0 AGACCTCGGTTTGAAGGAAGTTCCTGAGGATATCCCCGATGATACTATCCT-GCTGGACC 359 consensus_1678#1 AGATACCAACATTACAGAGATACCCAAAGGTCTGCCTAGGCTCTCTCTCTGAGCTCCATC 223 *** * * * ** * ** * * * * ** ** ** *** * * consensus_1678#0 TGCAGAACAACAAGATAGCTGAAATCAAGGAGAATGATTTCAAGAACCTTAAGGGACT-- 417 consensus_1678#1 TGGATGCAAACAAAATCACCAAGGTGACGGCTGCCAGTGTCCAGGGTCTGAAGAACCTGG 283 ** * ***** ** * * * * ** * ** ** ** *** ** consensus_1678#0 CCAAACTCTGATCCTGGTGAACAACAAGATCAGCGCCATCCACAACAAGGCCCTCAGCCC 477 consensus_1678#1 CCAAACTTGG--CCTGAGCGACAATGACATCAGCTCTGTGGAAAATGGCACAATGGCTAA 341 ******* * **** **** * ****** * * * ** * * consensus_1678#0 CCTGACCAAGCTGCAGCGTCTCTACCTGTCCAGGAATGCACTCAAGGACATGCCCCCCAA 537 consensus_1678#1 TGTTCCCCACCTGCGGGACGTGCACCTCGACAACAACGCTCTGACTAGCGTTCCTTCTGG 401 * ** * **** * * **** ** ** ** ** * * * ** * consensus_1678#0 CATGCCCAAGAGCCTGCAGGAGCTGCGCATCCATGACAATGCCATCACCAAGATCAAAAA 597 consensus_1678#1 ------------------------------------------------------------ consensus_1678#0 GGCCACTTTCCANGGCATGTCCAACATCATCGTCATGGAGCTTGGCTCCAAC 649 consensus_1678#1 ---------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |