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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[TGACGAGACTGCAGCGTGATGCTTGGAAGGTCGCACATGCTCCCACCAGCCTGGTCCACTGCGGATGACTCGGGGTGGGGGGCCGTCTGTGGCGCTCAGATGTTACTCAGAGGACACGTGAATAAGAGCAGACGGCTCGGTGACACACCGCAATAAATAACCCCTCTGAATGGGTCAAACGGGAGCCCCCACAGCACCGGGGCCTCAGACCTGCACCCACCCGTAGCGTCGCTGCTTCTGAAGAGTGGAGGCTAATGGAAATAACAGGAGGAGCACACTCGTTTAGCTCTGGTTGACGATGACTCTGCAAGTGTGTGTAAAGTTTAATTCAGGATGTTGGTGAGACAATCTGTGGAGGGCCTGGTGAATCCAGATTAGAGGACCAGGCCCTCGTAGGCGGGCCCCTCAGACTCAGGAGACTCCCTCTGCAGGCGGAGGTGCTCCAGTGTGTTTTGGAAGTGTTTGTTGATCTGCTCCGTCTCCTCGCTCGGCTCCAGGTTGGGAAGGTCTTCTCTGATCTTCTGGATGAGCTGGTTCAACACCTGCACAGTCACCGCATCGTTCTCCCTCTCGTAAAAGCAGACGTATCGGTTGAGGATCTCGATGAAGAG]
[+] EMBL CA329443 [TGACGAGACTGCAGCGTGATGCTTGGAAGGTCGCACATGCTCCCACCAGCCTGGTCCACTGCGGATGACTCGGGGTGGGGGGCCGTCTGTGGCGCTCAGATGTTACTCAGAGGACACGTGAATAAGAGCAGACGGCTCGGTGACACACCGCAATAAATAACCCCTCTGAATGGGTCAAACGGGAGCCCCCACAGCACCGGGGCCTCAGACCTGCACCCACCCGTAGCGTCGCTGCTTCTGAAGAGTGGAGGCTAATGGAAATAACAGGAGGAGCACACTCGTTTAGCTCTGGTTGACGATGACTCTGCAAGTGTGTGTAAAGTTTAATTCAGGATGTTGGTGAGACAATCTGTGGAGGGCCTGGTGAATCCAGATTAGAGGACCAGGCCCTCGTAGGCGGGCCCCTCAGACTCAGGAGACTCCCTCTGCAGGCGGAGGTGCTCCAGTGTGTTTTGGAAGTGTTTGTTGATCTGCTCCGTCTCCTCGCTCGGCTCCAGGTTGGGAAGGTCTTCTCTGATCTTCTGGATGAGCTGGTTCAACACCTGCACAGTCACCGCATCGTTCTCCCTCTCGTAAAAGCAGACGTATCGGTTGAGGATCTCGATGAAGAG]
consensusID : consensus_1683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 503 fasta sequence
[CCCCGAGTCATCCGCAGTGGACCAGGCTGGTGGGAGCATGTGCGGCCTTCCAAGCATCACGCTGCAGTCTCGTCATTAAAATTAAGATTAAAAAAAAAGGTTAAATAAGGTTAGCAGCCGTTCAGCCCTGGTGCAGCATGCTCGTTCACGCCTCGGCCCCCCCTCTTCTCTAAACGCCACCAGGATCTAATCCCACGTGTCCTGTCTCGATGCTGTCGGGCGGCGGGGTGTGTCCCCAGGGTTGCATGCTCCGTAAGCTGCTGCACTGATTCCCAGAAGAGTGTAAGAGTCATTCCCTGACCGCTCTCCTCCTCCCCTCGCTCCTCTGCCGGAGGCAGCGGCGACCAATTTCCATTCAAGTCTGTGTGTAAACTTGTAACTCGGATAAAAGCAGATTTAAATAGTGATTATCGTTATCATTTGCTGGCGTAAGTTGAGAATTAGCAACGCATCTTTGCATTTTGTTAGTTTTACACGCAGCATATGCAAAAATTAAAATGCTA]
[-] EMBL CA332172 [CCCCGAGTCATCCGCAGTGGACCAGGCTGGTGGGAGCATGTGCGGCCTTCCAAGCATCACGCTGCAGTCTCGTCATTAAAATTAAGATTAAAAAAAAAGGTTAAA AAGGTTAG AGCCGTTCAGCCCTGGTGCAGCATGCTCGTTCACGCCTCGGCCCCCCCTCTTCTCTAAACGCCACCAGAATCTAATCCCACGTGTCCTGTCTCGATGCTGTCGGGCGGCGGCGTGTGTCCCCAGGGTTGCATGCTCCGTAAGCTGCTGCACTGATTCCCAGAAGAGTGTAAGAGTCATTCCCTGACCGCTCTCCTCCTCCCCTCGCTCCTCTGCCGGAGGCAGCGGCGACCAATTTCCATTCAAGTCTGTGTGTAAACTTGTAACTCGGATAAAAGCAGATTTAAATAGTGATTATCGTTATCATTTGCTGGCGTAAGTTGAGAATTAGCAACGCATCTTTGCATTTTGTTAGTTTTACACGCAGCATATGCAAAAATTAAAATGCTA]
[+] EMBL FR0056238 [ TGGTGGTAGCATGTGCGGCCTTCCAAGCATCACGCTGCAGTCTCGTCATTATAATTATGATTAAAAAAAACGGTTAAATCAGGTTAGCAGCCGTTCAGCCCTGGTGTAGCATGCTCGTTCACGCCTCGGTCCCCCCTCTTCTCTAAACGCCACCAGGCTCTAATCCCACGTGTCCTGTCTCGATGCTGTCCGGCGGCGAGGTGTGTCCCCATGATTGCATGCTCCGTAAGCTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1683#0 TGACGAGACTGCAGCGTGATGCTTGGAAGGTCGCACATGCTCCCACCAGCCTGGTCCACT 60
consensus_1683#1 -----------------------------------------------CCCCGAGTCATCC 13
** *** *
consensus_1683#0 GCGGATGACTCGGGGTGGGGGGCCGTCTGTGGCGCTC-AGATGTTACTCAGAGGACACGT 119
consensus_1683#1 GCAGTGGACCAGGCTGGTGGGAGCATGTGCGGCCTTCCAAGCATCACGCTGCAGTCTCGT 73
** * *** ** * *** * * ** *** ** * * ** * * * * ***
consensus_1683#0 GAATAAGAGCAGACGGCTCGGTGACACACCGCAATAAATAACCCCTCTGAATGGGTCAAA 179
consensus_1683#1 CATTAAAATTAAG-------------------ATTAAAAAAAAAGGTTAAATAAGGTTAG 114
* *** * * * **** ** * *** * *
consensus_1683#0 CGGGAGCCCCCACAGCACCGGGGCCTCAGACCTGCACCCACCCGTAGCGTCGCTGCTTCT 239
consensus_1683#1 CAG----CCGTTCAGCCCTGGTGCAGCATGCTCGTTCACGCCT-CGGCCCCCCCTCTTCT 169
* * ** **** * ** ** ** * * * * ** ** * * *****
consensus_1683#0 GAAGAGTGGAGGCTAATGGAAATAACAGGAGGAGCACACTCGTTTAGCTCTGGTTGACGA 299
consensus_1683#1 ------------CTAA-----ACGCCACCAGGATCTAATCCCACGTGTCCTGTCT--CGA 210
**** * ** **** * * * * *** * ***
consensus_1683#0 TGACTCTGCAAGTGTGTGTAAAGTTTAATTCAGGATGTTGGTGAGACAATCTGTGGAGGG 359
consensus_1683#1 TG---CTGTCGGGCGGCGGGGTGTGTCCCCAGGGTTGCATGCTCCGTAAGCTGCTGCA-- 265
** *** * * * ** * ** ** * ** *** *
consensus_1683#0 CCTGGTGAATCCAGATTAGAGGACCAGGCCCTCGTAGGCGGGCCCCTCAGACTCAGGAGA 419
consensus_1683#1 -CTGATT--CCCAGAAGAGTGTAAGAGTCATTCCCTGACCGCTCTCCTCCTCCCCTCGCT 322
*** * ***** ** * * ** * ** * * * * * * *
consensus_1683#0 CTCCCTCTGCAGGCGGAGGTGCTCCAGTGTGTTTTGGAAGTGTTTGTTGATCTGCTCCGT 479
consensus_1683#1 CCTCTGCCGGAGGCAGCGGCGACCAATTTCCATTCAAGTCTGTGTGTAAACTTGTAACTC 382
* * * * **** * ** * * * * ** *** *** * ** *
consensus_1683#0 CTCCTCGCTCGGCTCCAGGTTGGGAAGGTCTTCTCTGATCTTCTGGATGAGCTGGTTCAA 539
consensus_1683#1 GGATAAAAGCAGATTTAAATAGTGATTATCGT-TATCATTTGCTGGCGTAAGTTGAGAAT 441
* * * * * * ** ** * * * ** * **** * * * *
consensus_1683#0 CACCTGCACAGTCACCGCATCGTTCTCCCTCTCGTAAAAGCAGACGTATCGGTTGAGGAT 599
consensus_1683#1 TAGCAACGCA-TCTTTGCATTTTGTTAGTTTTACACGCAGCATATGCAAAAATTAAAATG 500
* * * ** ** **** * * * * **** * * * ** *
consensus_1683#0 CTCGATGAAGAG 611
consensus_1683#1 CTA--------- 503
**
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |