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Takifugu rubripes
cluster # 1689 cluster # 1689       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1689#0 length = 1135 sequences # 2  
consensus_1689#1 length = 747 sequences # 1  

consensusID : consensus_1689#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1135
fasta sequence
                              [GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTACATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGACGGGGACCCAGAAGGAGGCGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCGGCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACCAGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGACCTGTTTGAGGACGAACTGGTGCCGCTATGTGAGAAGTTCGGTAAAATCTACGAGGTGAGGATGATGATGGACTTCAGCGGGAACAACCGAGGATACGCCTTCGTCACCTTCAGCAACAAACAGGAGGCCAAAGCGGCGATGAAGCAGCTCAACAACTACGAGATCAGAAACGGACGTCTCCTTGGAGTTTGCGCCAGCGTGGACAACTGCCGCCTGTTTGTGGGCGGGATTCCGAAAACCAAGAAGCGCGAGGAGATCATGTGCGAGATGAGGAAGGTCACAGACGGGGTCCTAGATGTCATCGTTTACCCGAGTGCTGCCGACAAATCAAAGAACCGAGGATTCGCCTTTGTCGAGTACGAAAGCCATCGAGCTGCCGCCATGGCGAGGCGCAAACTACTGCCAGGTCGTATTCAGCTCTGGGGTCATGCCATCGCAGTGGACTGGGCGGAGCCTGAGGTGGAGGTCGACGAGGACACCATGGCAACTGTAAAGATCTTGTATGTGAGGAACTTGATGCTTCAGACCACAGAGGAGACCATCGAGAAGGAGTTTAATAGCCTAAAACAAGGTGCAGTGGAGCGAGTGAAGAAAATCAGAGATTACGCCTTTGTGCACTTCACCCAGCGAGAAGATGCCATCCATGCCATGAACGCGCTCAACGGAAAGGTGGTTGACGGCTCTCCCATTGAGGTGACTCTGGCGAAGCCAGTGGACAAGGACAGCTACGTCCGATACACTAGAGGAACCGGAGGACGGGGTGGATCTCTGCAGACCGACTACGCCACCTATTCAGTGGGACAGATGTACGACCCTTCGACGGCGTATCTCGGCGCGCCCATGTTTTACGCC]

[+] EMBL CA590172             [GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTACATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGACGGGGACCCAGAAGGAGGCGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCGGCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACCAGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGACCTGTTTGAGGACGAACTGGTGCCGCTATGTGAGAAGTTCGGTAAAATCTACGAGGTGAGGATGATGATGGACTTCAGCGGGAACAACCGAGGATACGCCTTCGTCACCTTCAGCAACAAACAGGAGGCCAAAGCGGCGATGAAGCAGCTCAACAACTACGAGATCAGAAACGGACGTCTCCTTGGAGTTTGCGCCAGCGTGGACAACTGCCGCCTGTTTGTGGGCGGGATTCCGAAAACCAAGAAGCGCGAGGAGATCATGTGCGAGATGAGGAAGGTCACAGACGGGGTCCTAGATGTCATCGTTTACCCGAGTGCTGCCGACAAATCAAAGAACCGAGGATTCGCCTTTGTCGAGTACGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CA847002             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGTGGACAACTGCCGCCTGTTTGTGGGCGGGATTCCGCATACCAAGAAGCGCGAGGAGATCATGTGCGAGATGAGGAAGGTCACAGACGGGGTCCTAGATGTCATCGTTTACCCGAGTGCTGCCGACAAATCAAAGAACCGAGGATTCGCCTTTGTCGAGTACGAAAGCCATCGAGCTGCCGCCATGGCGAGGCGCAAACTACTGCCAGGTCGTATTCAGCTCTGGGGTCATGCCATCGCAGTGGACTGGGCGGAGCCTGAGGTGGAGGTCGACGAGGACACCATGGCAACTGTAAAGATCTTGTATGTGAGGAACTTGATGCTTCAGACCACAGAGGAGACCATCGAGAAGGAGTTTAATAGCCTAAAACAAGGTGCAGTGGAGCGAGTGAAGAAAATCAGAGATTACGCCTTTGTGCACTTCACCCAGCGAGAAGATGCCATCCATGCCATGAACGCGCTCAACGGAAAGGTGGTTGACGGCTCTCCCATTGAGGTGACTCTGGCGAAGCCAGTGGACAAGGACAGCTACGTCCGATACACTAGAGGAACCGGAGGACGGGGTGGATCTCTGCAGACCGACTACGCCACCTATTCAGTGGGACAGATGTACGACCCTTCGACGGCGTATCTCGGCGCGCCCATGTTTTACGCC]


>consensus_1689#0 GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTAC ATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGAC GGGGACCCAGAAGGAGGCGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCG GCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACC AGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGACCTGTTTGAGGACGAACT GGTGCCGCTATGTGAGAAGTTCGGTAAAATCTACGAGGTGAGGATGATGATGGACTTCAG CGGGAACAACCGAGGATACGCCTTCGTCACCTTCAGCAACAAACAGGAGGCCAAAGCGGC GATGAAGCAGCTCAACAACTACGAGATCAGAAACGGACGTCTCCTTGGAGTTTGCGCCAG CGTGGACAACTGCCGCCTGTTTGTGGGCGGGATTCCGAAAACCAAGAAGCGCGAGGAGAT CATGTGCGAGATGAGGAAGGTCACAGACGGGGTCCTAGATGTCATCGTTTACCCGAGTGC TGCCGACAAATCAAAGAACCGAGGATTCGCCTTTGTCGAGTACGAAAGCCATCGAGCTGC CGCCATGGCGAGGCGCAAACTACTGCCAGGTCGTATTCAGCTCTGGGGTCATGCCATCGC AGTGGACTGGGCGGAGCCTGAGGTGGAGGTCGACGAGGACACCATGGCAACTGTAAAGAT CTTGTATGTGAGGAACTTGATGCTTCAGACCACAGAGGAGACCATCGAGAAGGAGTTTAA TAGCCTAAAACAAGGTGCAGTGGAGCGAGTGAAGAAAATCAGAGATTACGCCTTTGTGCA CTTCACCCAGCGAGAAGATGCCATCCATGCCATGAACGCGCTCAACGGAAAGGTGGTTGA CGGCTCTCCCATTGAGGTGACTCTGGCGAAGCCAGTGGACAAGGACAGCTACGTCCGATA CACTAGAGGAACCGGAGGACGGGGTGGATCTCTGCAGACCGACTACGCCACCTATTCAGT GGGACAGATGTACGACCCTTCGACGGCGTATCTCGGCGCGCCCATGTTTTACGCC



consensusID : consensus_1689#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 747
fasta sequence
                              [GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTACATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGACGGGGACCCAGAAGGAGGTGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCGGCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACCAGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGATCTGTTTGAGGACGAACTGGTGCCGCTATGTGAGAAGGTGACGGAGGAAAGGAGGTCCCTTCGTTCCGCCTGTCTCTTTTTAACCGCTGCTCTCCCCGTCTTCAGTTCGGTAAAATCTACGAGGTGAGGATGATGATGGACTTCAGCGGGAACAACCGAGGATACGCCTTCGTCACCTTCAGCAACAAACAGGAGGCCAAAGCGGCGATGAAGCAGCTCAACAACTACGAGATCAGGTGACGCCAGAGATAGAAAGTTGAGGAAGAACCCAAGTTTTTGGTCTTCTTCACCAGTTAAACGATCGAATCTTTTGGATGGCGCCGAGGCAACGTGTCACAGAGCCTTCTCTCTCCGCGGCTGCGCTTCACCTCCACAGAAACGGACGTCTCCTTGGAGTTTGCGCCAGCGTGGACAACTGCCGCCTGTTTGTGGGCGGGATTCCGAAAACCAAGAAGCGCGAGGAGA]

[+] EMBL CA591624             [GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTACATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGACGGGGACCCAGAAGGAGGTGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCGGCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACCAGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGATCTGTTTGAGGACGAACTGGTGCCGCTATGTGAGAAGGTGACGGAGGAAAGGAGGTCCCTTCGTTCCGCCTGTCTCTTTTTAACCGCTGCTCTCCCCGTCTTCAGTTCGGTAAAATCTACGAGGTGAGGATGATGATGGACTTCAGCGGGAACAACCGAGGATACGCCTTCGTCACCTTCAGCAACAAACAGGAGGCCAAAGCGGCGATGAAGCAGCTCAACAACTACGAGATCAGGTGACGCCAGAGATAGAAAGTTGAGGAAGAACCCAAGTTTTTGGTCTTCTTCACCAGTTAAACGATCGAATCTTTTGGATGGCGCCGAGGCAACGTGTCACAGAGCCTTCTCTCTCCGCGGCTGCGCTTCACCTCCACAGAAACGGACGTCTCCTTGGAGTTTGCGCCAGCGTGGACAACTGCCGCCTGTTTGTGGGCGGGATTCCGAAAACCAAGAAGCGCGAGGAGA]


>consensus_1689#1 GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTAC ATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGAC GGGGACCCAGAAGGAGGTGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCG GCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACC AGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGATCTGTTTGAGGACGAACT GGTGCCGCTATGTGAGAAGGTGACGGAGGAAAGGAGGTCCCTTCGTTCCGCCTGTCTCTT TTTAACCGCTGCTCTCCCCGTCTTCAGTTCGGTAAAATCTACGAGGTGAGGATGATGATG GACTTCAGCGGGAACAACCGAGGATACGCCTTCGTCACCTTCAGCAACAAACAGGAGGCC AAAGCGGCGATGAAGCAGCTCAACAACTACGAGATCAGGTGACGCCAGAGATAGAAAGTT GAGGAAGAACCCAAGTTTTTGGTCTTCTTCACCAGTTAAACGATCGAATCTTTTGGATGG CGCCGAGGCAACGTGTCACAGAGCCTTCTCTCTCCGCGGCTGCGCTTCACCTCCACAGAA ACGGACGTCTCCTTGGAGTTTGCGCCAGCGTGGACAACTGCCGCCTGTTTGTGGGCGGGA TTCCGAAAACCAAGAAGCGCGAGGAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1689#0      GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTAC 60
consensus_1689#1      GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTAC 60
                      ************************************************************

consensus_1689#0      ATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGAC 120
consensus_1689#1      ATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGAC 120
                      ************************************************************

consensus_1689#0      GGGGACCCAGAAGGAGGCGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCG 180
consensus_1689#1      GGGGACCCAGAAGGAGGTGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCG 180
                      ***************** ******************************************

consensus_1689#0      GCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACC 240
consensus_1689#1      GCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACC 240
                      ************************************************************

consensus_1689#0      AGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGACCTGTTTGAGGACGAACT 300
consensus_1689#1      AGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGATCTGTTTGAGGACGAACT 300
                      ****************************************** *****************

consensus_1689#0      GGTGCCGCTATGTGAGAAGTTCGGTAAAATCTACGAGGTGAGGATGATGATGGACTTCAG 360
consensus_1689#1      GGTGCCGCTATGTGAGAA----GGTGACG-----GAGGAAAGGAGGTCCCTTCGTTCCGC 351
                      ******************    *** *       ****  **** *    *    * *  

consensus_1689#0      CGGGAACAACCGAGGATACGCCTTCGTCACCTTCAGCAACAAACAGGAGGCCAAAGCGGC 420
consensus_1689#1      CTGTCTCTTTTTAACCGCTGCTCTCCCCGTCTTCAGTTCGGTA----AAATCTACGAGGT 407
                      * *   *     *      **  **  *  ******      *    *   * * * ** 

consensus_1689#0      GATGAAGCAGCTCAACAACTACGAGATCAGAAACGGACGTCTCCTTGGAGTTTGCGCCAG 480
consensus_1689#1      GAGGATGATGATGGACTTCAGCGGGAACAACCGAGGATAC---------GCCTTCGTCAC 458
                      ** ** *  * *  **  *  ** ** **     ***            *  * ** ** 

consensus_1689#0      CGTGGACAACTGCCGCCTGTTTGTGGGCGGGATTCCGAAAACCAAGAAGCGCGAGGAGAT 540
consensus_1689#1      CTTCAGCAACAAACAGGAGGCCAAAGCGGCGATGAAGCAGCTCAACAACTACGAGATCAG 518
                      * *   ****   *    *      *  * ***   * *   *** **   ****   * 

consensus_1689#0      CATGTGCGAGATGAGGAAGGTCACAGACGGGGTCCTAGATGTCATCGTTTACCCGAGTGC 600
consensus_1689#1      GTGACGCCAGAGATAGAAAGTTGAGGAAGAACCCAAGTTTTTGGTCTTCTTCACCAGT-- 576
                           ** ***    *** **    ** *    *     * *  ** * * * * ***  

consensus_1689#0      TGCCGACAAATCAAAGAACCGAGGATTCGCCTTTGTCGAGTACGAAAGCCATCGAGCTGC 660
consensus_1689#1      ---TAAACGATCGAATCTTTTGGATGGCGCCGAGGCAACGTGTCACAG--AGCCTTCTCT 631
                           *   *** **       *    ****   *    **   * **  * *   **  

consensus_1689#0      CGCCATGGCGAGGCGCAAACTACTGCCAGGTCGTATTCAGCTCTGGGGTCATGCCATCGC 720
consensus_1689#1      CTCCGCGGCTGCGCTTCACCTCCACAGAAACGGACGTCTCCTTGGAGTTTGCGCCAGCGT 691
                      * **  ***   **   * ** *    *    *   **  **  * * *   **** ** 

consensus_1689#0      AGTGGACTGGGCGGAGCCTGAGGTGGAGGTCGACGAGGACACCATGGCAACTGTAAAGAT 780
consensus_1689#1      GGACAACTGCCGCCTGTTTGTGGGCGGGATTCC---GAAAACCAAGAAGCGCGAGGAGA- 747
                       *   ****      *  ** **  * * *      * * **** *      *   *** 

consensus_1689#0      CTTGTATGTGAGGAACTTGATGCTTCAGACCACAGAGGAGACCATCGAGAAGGAGTTTAA 840
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      TAGCCTAAAACAAGGTGCAGTGGAGCGAGTGAAGAAAATCAGAGATTACGCCTTTGTGCA 900
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      CTTCACCCAGCGAGAAGATGCCATCCATGCCATGAACGCGCTCAACGGAAAGGTGGTTGA 960
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      CGGCTCTCCCATTGAGGTGACTCTGGCGAAGCCAGTGGACAAGGACAGCTACGTCCGATA 1020
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      CACTAGAGGAACCGGAGGACGGGGTGGATCTCTGCAGACCGACTACGCCACCTATTCAGT 1080
consensus_1689#1      ------------------------------------------------------------
                                                                                  

consensus_1689#0      GGGACAGATGTACGACCCTTCGACGGCGTATCTCGGCGCGCCCATGTTTTACGCC 1135
consensus_1689#1      -------------------------------------------------------
                                                                             




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)