These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1689#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1135 fasta sequence [GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTACATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGACGGGGACCCAGAAGGAGGCGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCGGCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACCAGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGACCTGTTTGAGGACGAACTGGTGCCGCTATGTGAGAAGTTCGGTAAAATCTACGAGGTGAGGATGATGATGGACTTCAGCGGGAACAACCGAGGATACGCCTTCGTCACCTTCAGCAACAAACAGGAGGCCAAAGCGGCGATGAAGCAGCTCAACAACTACGAGATCAGAAACGGACGTCTCCTTGGAGTTTGCGCCAGCGTGGACAACTGCCGCCTGTTTGTGGGCGGGATTCCGAAAACCAAGAAGCGCGAGGAGATCATGTGCGAGATGAGGAAGGTCACAGACGGGGTCCTAGATGTCATCGTTTACCCGAGTGCTGCCGACAAATCAAAGAACCGAGGATTCGCCTTTGTCGAGTACGAAAGCCATCGAGCTGCCGCCATGGCGAGGCGCAAACTACTGCCAGGTCGTATTCAGCTCTGGGGTCATGCCATCGCAGTGGACTGGGCGGAGCCTGAGGTGGAGGTCGACGAGGACACCATGGCAACTGTAAAGATCTTGTATGTGAGGAACTTGATGCTTCAGACCACAGAGGAGACCATCGAGAAGGAGTTTAATAGCCTAAAACAAGGTGCAGTGGAGCGAGTGAAGAAAATCAGAGATTACGCCTTTGTGCACTTCACCCAGCGAGAAGATGCCATCCATGCCATGAACGCGCTCAACGGAAAGGTGGTTGACGGCTCTCCCATTGAGGTGACTCTGGCGAAGCCAGTGGACAAGGACAGCTACGTCCGATACACTAGAGGAACCGGAGGACGGGGTGGATCTCTGCAGACCGACTACGCCACCTATTCAGTGGGACAGATGTACGACCCTTCGACGGCGTATCTCGGCGCGCCCATGTTTTACGCC] [+] EMBL CA590172 [GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTACATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGACGGGGACCCAGAAGGAGGCGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCGGCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACCAGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGACCTGTTTGAGGACGAACTGGTGCCGCTATGTGAGAAGTTCGGTAAAATCTACGAGGTGAGGATGATGATGGACTTCAGCGGGAACAACCGAGGATACGCCTTCGTCACCTTCAGCAACAAACAGGAGGCCAAAGCGGCGATGAAGCAGCTCAACAACTACGAGATCAGAAACGGACGTCTCCTTGGAGTTTGCGCCAGCGTGGACAACTGCCGCCTGTTTGTGGGCGGGATTCCGAAAACCAAGAAGCGCGAGGAGATCATGTGCGAGATGAGGAAGGTCACAGACGGGGTCCTAGATGTCATCGTTTACCCGAGTGCTGCCGACAAATCAAAGAACCGAGGATTCGCCTTTGTCGAGTACGAA ] [+] EMBL CA847002 [ CGTGGACAACTGCCGCCTGTTTGTGGGCGGGATTCCGCATACCAAGAAGCGCGAGGAGATCATGTGCGAGATGAGGAAGGTCACAGACGGGGTCCTAGATGTCATCGTTTACCCGAGTGCTGCCGACAAATCAAAGAACCGAGGATTCGCCTTTGTCGAGTACGAAAGCCATCGAGCTGCCGCCATGGCGAGGCGCAAACTACTGCCAGGTCGTATTCAGCTCTGGGGTCATGCCATCGCAGTGGACTGGGCGGAGCCTGAGGTGGAGGTCGACGAGGACACCATGGCAACTGTAAAGATCTTGTATGTGAGGAACTTGATGCTTCAGACCACAGAGGAGACCATCGAGAAGGAGTTTAATAGCCTAAAACAAGGTGCAGTGGAGCGAGTGAAGAAAATCAGAGATTACGCCTTTGTGCACTTCACCCAGCGAGAAGATGCCATCCATGCCATGAACGCGCTCAACGGAAAGGTGGTTGACGGCTCTCCCATTGAGGTGACTCTGGCGAAGCCAGTGGACAAGGACAGCTACGTCCGATACACTAGAGGAACCGGAGGACGGGGTGGATCTCTGCAGACCGACTACGCCACCTATTCAGTGGGACAGATGTACGACCCTTCGACGGCGTATCTCGGCGCGCCCATGTTTTACGCC] consensusID : consensus_1689#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 747 fasta sequence [GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTACATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGACGGGGACCCAGAAGGAGGTGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCGGCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACCAGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGATCTGTTTGAGGACGAACTGGTGCCGCTATGTGAGAAGGTGACGGAGGAAAGGAGGTCCCTTCGTTCCGCCTGTCTCTTTTTAACCGCTGCTCTCCCCGTCTTCAGTTCGGTAAAATCTACGAGGTGAGGATGATGATGGACTTCAGCGGGAACAACCGAGGATACGCCTTCGTCACCTTCAGCAACAAACAGGAGGCCAAAGCGGCGATGAAGCAGCTCAACAACTACGAGATCAGGTGACGCCAGAGATAGAAAGTTGAGGAAGAACCCAAGTTTTTGGTCTTCTTCACCAGTTAAACGATCGAATCTTTTGGATGGCGCCGAGGCAACGTGTCACAGAGCCTTCTCTCTCCGCGGCTGCGCTTCACCTCCACAGAAACGGACGTCTCCTTGGAGTTTGCGCCAGCGTGGACAACTGCCGCCTGTTTGTGGGCGGGATTCCGAAAACCAAGAAGCGCGAGGAGA] [+] EMBL CA591624 [GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTACATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGACGGGGACCCAGAAGGAGGTGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCGGCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACCAGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGATCTGTTTGAGGACGAACTGGTGCCGCTATGTGAGAAGGTGACGGAGGAAAGGAGGTCCCTTCGTTCCGCCTGTCTCTTTTTAACCGCTGCTCTCCCCGTCTTCAGTTCGGTAAAATCTACGAGGTGAGGATGATGATGGACTTCAGCGGGAACAACCGAGGATACGCCTTCGTCACCTTCAGCAACAAACAGGAGGCCAAAGCGGCGATGAAGCAGCTCAACAACTACGAGATCAGGTGACGCCAGAGATAGAAAGTTGAGGAAGAACCCAAGTTTTTGGTCTTCTTCACCAGTTAAACGATCGAATCTTTTGGATGGCGCCGAGGCAACGTGTCACAGAGCCTTCTCTCTCCGCGGCTGCGCTTCACCTCCACAGAAACGGACGTCTCCTTGGAGTTTGCGCCAGCGTGGACAACTGCCGCCTGTTTGTGGGCGGGATTCCGAAAACCAAGAAGCGCGAGGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1689#0 GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTAC 60 consensus_1689#1 GATCGGAGGAAGGTGATCTCTGAAATTGCTCAGTGAGCGTCCATAATTTCCCTGATTTAC 60 ************************************************************ consensus_1689#0 ATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGAC 120 consensus_1689#1 ATACTGCTGTCAATCACACCCAATGGAAGCCAATCAGAATGCAAGCGGGGACGAGCTGAC 120 ************************************************************ consensus_1689#0 GGGGACCCAGAAGGAGGCGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCG 180 consensus_1689#1 GGGGACCCAGAAGGAGGTGCAGCTGCGAGCGCTAACGCAGCGTACGGGGTACCAATTGCG 180 ***************** ****************************************** consensus_1689#0 GCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACC 240 consensus_1689#1 GCAGGAGAACGGCCAGCGGCGCTATGGCGGCCCTCCACCCGACTGGAACGGCCCTCCACC 240 ************************************************************ consensus_1689#0 AGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGACCTGTTTGAGGACGAACT 300 consensus_1689#1 AGAGAGGGGGAGCGAGATCTTTGTGGGAAAACTGCCAAGAGATCTGTTTGAGGACGAACT 300 ****************************************** ***************** consensus_1689#0 GGTGCCGCTATGTGAGAAGTTCGGTAAAATCTACGAGGTGAGGATGATGATGGACTTCAG 360 consensus_1689#1 GGTGCCGCTATGTGAGAA----GGTGACG-----GAGGAAAGGAGGTCCCTTCGTTCCGC 351 ****************** *** * **** **** * * * * consensus_1689#0 CGGGAACAACCGAGGATACGCCTTCGTCACCTTCAGCAACAAACAGGAGGCCAAAGCGGC 420 consensus_1689#1 CTGTCTCTTTTTAACCGCTGCTCTCCCCGTCTTCAGTTCGGTA----AAATCTACGAGGT 407 * * * * ** ** * ****** * * * * * ** consensus_1689#0 GATGAAGCAGCTCAACAACTACGAGATCAGAAACGGACGTCTCCTTGGAGTTTGCGCCAG 480 consensus_1689#1 GAGGATGATGATGGACTTCAGCGGGAACAACCGAGGATAC---------GCCTTCGTCAC 458 ** ** * * * ** * ** ** ** *** * * ** ** consensus_1689#0 CGTGGACAACTGCCGCCTGTTTGTGGGCGGGATTCCGAAAACCAAGAAGCGCGAGGAGAT 540 consensus_1689#1 CTTCAGCAACAAACAGGAGGCCAAAGCGGCGATGAAGCAGCTCAACAACTACGAGATCAG 518 * * **** * * * * *** * * *** ** **** * consensus_1689#0 CATGTGCGAGATGAGGAAGGTCACAGACGGGGTCCTAGATGTCATCGTTTACCCGAGTGC 600 consensus_1689#1 GTGACGCCAGAGATAGAAAGTTGAGGAAGAACCCAAGTTTTTGGTCTTCTTCACCAGT-- 576 ** *** *** ** ** * * * * ** * * * * *** consensus_1689#0 TGCCGACAAATCAAAGAACCGAGGATTCGCCTTTGTCGAGTACGAAAGCCATCGAGCTGC 660 consensus_1689#1 ---TAAACGATCGAATCTTTTGGATGGCGCCGAGGCAACGTGTCACAG--AGCCTTCTCT 631 * *** ** * **** * ** * ** * * ** consensus_1689#0 CGCCATGGCGAGGCGCAAACTACTGCCAGGTCGTATTCAGCTCTGGGGTCATGCCATCGC 720 consensus_1689#1 CTCCGCGGCTGCGCTTCACCTCCACAGAAACGGACGTCTCCTTGGAGTTTGCGCCAGCGT 691 * ** *** ** * ** * * * ** ** * * * **** ** consensus_1689#0 AGTGGACTGGGCGGAGCCTGAGGTGGAGGTCGACGAGGACACCATGGCAACTGTAAAGAT 780 consensus_1689#1 GGACAACTGCCGCCTGTTTGTGGGCGGGATTCC---GAAAACCAAGAAGCGCGAGGAGA- 747 * **** * ** ** * * * * * **** * * *** consensus_1689#0 CTTGTATGTGAGGAACTTGATGCTTCAGACCACAGAGGAGACCATCGAGAAGGAGTTTAA 840 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 TAGCCTAAAACAAGGTGCAGTGGAGCGAGTGAAGAAAATCAGAGATTACGCCTTTGTGCA 900 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 CTTCACCCAGCGAGAAGATGCCATCCATGCCATGAACGCGCTCAACGGAAAGGTGGTTGA 960 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 CGGCTCTCCCATTGAGGTGACTCTGGCGAAGCCAGTGGACAAGGACAGCTACGTCCGATA 1020 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 CACTAGAGGAACCGGAGGACGGGGTGGATCTCTGCAGACCGACTACGCCACCTATTCAGT 1080 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 GGGACAGATGTACGACCCTTCGACGGCGTATCTCGGCGCGCCCATGTTTTACGCC 1135 consensus_1689#1 ------------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |