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Takifugu rubripes
cluster # 1696 cluster # 1696       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1696#0 length = 580 sequences # 2  
 consensus_1696#1 length = 374 sequences # 1  
consensusID : consensus_1696#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 580
fasta sequence 
                              [TCAACAACCTATTTATTTATNTGATTCTTCATTTTACCATTTTTTTTAAAATTGAAATCAAGGGGTATACTGACAAAAAAAGGGCCCAGAGGCCCACACCAAAAATATTAAAACCAATATTTTCATGGATATGGAAGCCTAACAAGGTAACCAAGAGATGAGAAACAAATTGGATGATAGCTATGTTTTTAGTGTTTTTTTTACAGCCAATTTAAGACACGGGTCAAAACCGACCCGTTAACATCAGAGATGGTAACAGGAAAAGAACACAAGAGGAGGGTTAATGTCATATTCTATTCGCTAATTAACACAGTGCAATTCTGGCCTGCAAGAAAACCTAAACAGAAGTGTTGCAATTATTCTGACTAGTTGTGTGATTATAATGCGAGGGAGTTGCACCCCGTAGGGTAGATTAGCTAGAATAGCTACAGGGGGCGGATGCTCATTCTACTTTCTCTGGCTCATAGAAAGGGAGAGTCCGAGCTGAGGGGTCCGTGGCCTTTAGCCACTTTGGCATCCAGTAATGAGGAAGCCATTTAGCCTGGTTTGGGAAGAACTCCTCAAAGATCTGCCTGAAGTA]

[-] EMBL FR0056338            [TCAACAACCT TTTATTTATNTGATTCTTCATTTTACCATTTTTTTTAAAATTGAAATCAAGGGGTATACTGACAAAAAAAGGGCCCAGAGGCCCACACCAAAAATATTAAAACCAATATTTTCATGGATATGGAAGCCTAACAAGGTAACCAAGAGATGAGAAACAAATTGGATGATAGCTATGTTTTTAGTGTTTTTTTTACAGCCAATTTAAGACACGGGTCAAAACCGACCCGTTAACATCAGAGATGGTAACAGGAAAAGAACACAAGAGGAGGGTTAATGTCATATTCTATTCGCTAATTAACACAGTGCAATTCTGGCCTGCAAGAAAACCTAAACAGAAGTGTTGCAATTATTCTGACT GTTGTGTGATTATAATGCGAGGGAGTTGCACCCCGTAGGGTAGATTAGCTAGAATAGCTACAGGGGGCGGATGCTCATTCTACTTTCT                                                                                                                            ]
[+] EMBL CA329415             [  AACCTTTTATTTATTTATATGATTCTTCATTTTACCATTTTTTTTAAAATTGAAATCAAGGGGTATACTGACAAAAAAAGGGCCCAGAGGCCCACACCAAAAATATTAAAACCAATATTTTCATGGATATGGAAGCCTAACAAGGTAACCAAGAGATGAGAAACAAATTGGATGATAGCTATGTTTTTAGTGTTTTTTTTACAGCCAATTTAAGACACGGGTCAAAACCGACCCGTTAACATCAGAGATGGTAACAGGAAAAGAACACAAGAGGAGGGTTAATGTCATATTCTATTCGCTAATTAACACAGTGCAATTCTGGCCTGCAAGAAAACCTAAACAGAAGTGTTGCAATTATTCTGACTAGTTGTGTGATTATAATGCGAGGGAGTTGCACCCCGTAGGGTAGATTAGCTAGAATAGCTACAGGGGGCGGATGCTCATTCTACTTTCTCTGGCTCATAGAAAGGGAGAGTCCGAGCTGAGGGGTCCGTGGCCTTTAGCCACTTTGGCATCCAGTAATGAGGAAGCCATTTAGCCTGGTTTGGGAAGAACTCCTCAAAGATCTGCCTGAAGTA]




>consensus_1696#0
TCAACAACCTATTTATTTATNTGATTCTTCATTTTACCATTTTTTTTAAAATTGAAATCA
AGGGGTATACTGACAAAAAAAGGGCCCAGAGGCCCACACCAAAAATATTAAAACCAATAT
TTTCATGGATATGGAAGCCTAACAAGGTAACCAAGAGATGAGAAACAAATTGGATGATAG
CTATGTTTTTAGTGTTTTTTTTACAGCCAATTTAAGACACGGGTCAAAACCGACCCGTTA
ACATCAGAGATGGTAACAGGAAAAGAACACAAGAGGAGGGTTAATGTCATATTCTATTCG
CTAATTAACACAGTGCAATTCTGGCCTGCAAGAAAACCTAAACAGAAGTGTTGCAATTAT
TCTGACTAGTTGTGTGATTATAATGCGAGGGAGTTGCACCCCGTAGGGTAGATTAGCTAG
AATAGCTACAGGGGGCGGATGCTCATTCTACTTTCTCTGGCTCATAGAAAGGGAGAGTCC
GAGCTGAGGGGTCCGTGGCCTTTAGCCACTTTGGCATCCAGTAATGAGGAAGCCATTTAG
CCTGGTTTGGGAAGAACTCCTCAAAGATCTGCCTGAAGTA

consensusID : consensus_1696#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence 
                              [TTTTTTTTTTTTTTTTTTTTTTTTAAAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACACAACAACCTTTTATTTATTTATATGATTCTTCATTTTACCATTTTTTTTAAAATTGAAATCAAGGGGTATACTGACAAAAAAAGGGCCCAGAGGCCCACACCAAAAATATTAAAACCAATATTTTCATGGATATGGAAGCCTAACAAGGTAACCAAGAGATGAGAAACAAATTGGATGATAGCTATGTTTTTAGTGTTTTTTTTACAGCCAATTTAAGACACGGGTCCCCTTCATGGCCGTTAACATCAGAGATGGTAACAGGAAAAGAATCTTGATCGG]

[-] EMBL CA588574             [TTTTTTTTTTTTTTTTTTTTTTTTAAAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACACAACAACCTTTTATTTATTTATATGATTCTTCATTTTACCATTTTTTTTAAAATTGAAATCAAGGGGTATACTGACAAAAAAAGGGCCCAGAGGCCCACACCAAAAATATTAAAACCAATATTTTCATGGATATGGAAGCCTAACAAGGTAACCAAGAGATGAGAAACAAATTGGATGATAGCTATGTTTTTAGTGTTTTTTTTACAGCCAATTTAAGACACGGGTCCCCTTCATGGCCGTTAACATCAGAGATGGTAACAGGAAAAGAATCTTGATCGG]




>consensus_1696#1
TTTTTTTTTTTTTTTTTTTTTTTTAAAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACACAACAACCTTTTATTTATTTATATGA
TTCTTCATTTTACCATTTTTTTTAAAATTGAAATCAAGGGGTATACTGACAAAAAAAGGG
CCCAGAGGCCCACACCAAAAATATTAAAACCAATATTTTCATGGATATGGAAGCCTAACA
AGGTAACCAAGAGATGAGAAACAAATTGGATGATAGCTATGTTTTTAGTGTTTTTTTTAC
AGCCAATTTAAGACACGGGTCCCCTTCATGGCCGTTAACATCAGAGATGGTAACAGGAAA
AGAATCTTGATCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1696#0      ------------------------------------------------------------
consensus_1696#1      TTTTTTTTTTTTTTTTTTTTTTTTAAAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
                                                                                  

consensus_1696#0      ---------------------------------TCAACAACCT---ATTTATTTATNTGA 24
consensus_1696#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACACAACAACCTTTTATTTATTTATATGA 120
                                                        *********   ********** ***

consensus_1696#0      TTCTTCATTTTACCATTTTTTTTAAAATTGAAATCAAGGGGTATACTGACAAAAAAAGGG 84
consensus_1696#1      TTCTTCATTTTACCATTTTTTTTAAAATTGAAATCAAGGGGTATACTGACAAAAAAAGGG 180
                      ************************************************************

consensus_1696#0      CCCAGAGGCCCACACCAAAAATATTAAAACCAATATTTTCATGGATATGGAAGCCTAACA 144
consensus_1696#1      CCCAGAGGCCCACACCAAAAATATTAAAACCAATATTTTCATGGATATGGAAGCCTAACA 240
                      ************************************************************

consensus_1696#0      AGGTAACCAAGAGATGAGAAACAAATTGGATGATAGCTATGTTTTTAGTGTTTTTTTTAC 204
consensus_1696#1      AGGTAACCAAGAGATGAGAAACAAATTGGATGATAGCTATGTTTTTAGTGTTTTTTTTAC 300
                      ************************************************************

consensus_1696#0      AGCCAATTTAAGACACGGGTCAAAACCG-ACCCGTTAACATCAGAGATGGTAACAGGAAA 263
consensus_1696#1      AGCCAATTTAAGACACGGGTCCCCTTCATGGCCGTTAACATCAGAGATGGTAACAGGAAA 360
                      *********************     *    *****************************

consensus_1696#0      AGAACACAAGAGGAGGGTTAATGTCATATTCTATTCGCTAATTAACACAGTGCAATTCTG 323
consensus_1696#1      AGAATCTTGATCGG---------------------------------------------- 374
                      ****        *                                               

consensus_1696#0      GCCTGCAAGAAAACCTAAACAGAAGTGTTGCAATTATTCTGACTAGTTGTGTGATTATAA 383
consensus_1696#1      ------------------------------------------------------------
                                                                                  

consensus_1696#0      TGCGAGGGAGTTGCACCCCGTAGGGTAGATTAGCTAGAATAGCTACAGGGGGCGGATGCT 443
consensus_1696#1      ------------------------------------------------------------
                                                                                  

consensus_1696#0      CATTCTACTTTCTCTGGCTCATAGAAAGGGAGAGTCCGAGCTGAGGGGTCCGTGGCCTTT 503
consensus_1696#1      ------------------------------------------------------------
                                                                                  

consensus_1696#0      AGCCACTTTGGCATCCAGTAATGAGGAAGCCATTTAGCCTGGTTTGGGAAGAACTCCTCA 563
consensus_1696#1      ------------------------------------------------------------
                                                                                  

consensus_1696#0      AAGATCTGCCTGAAGTA 580
consensus_1696#1      -----------------


Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)