These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1696#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 580 fasta sequence [TCAACAACCTATTTATTTATNTGATTCTTCATTTTACCATTTTTTTTAAAATTGAAATCAAGGGGTATACTGACAAAAAAAGGGCCCAGAGGCCCACACCAAAAATATTAAAACCAATATTTTCATGGATATGGAAGCCTAACAAGGTAACCAAGAGATGAGAAACAAATTGGATGATAGCTATGTTTTTAGTGTTTTTTTTACAGCCAATTTAAGACACGGGTCAAAACCGACCCGTTAACATCAGAGATGGTAACAGGAAAAGAACACAAGAGGAGGGTTAATGTCATATTCTATTCGCTAATTAACACAGTGCAATTCTGGCCTGCAAGAAAACCTAAACAGAAGTGTTGCAATTATTCTGACTAGTTGTGTGATTATAATGCGAGGGAGTTGCACCCCGTAGGGTAGATTAGCTAGAATAGCTACAGGGGGCGGATGCTCATTCTACTTTCTCTGGCTCATAGAAAGGGAGAGTCCGAGCTGAGGGGTCCGTGGCCTTTAGCCACTTTGGCATCCAGTAATGAGGAAGCCATTTAGCCTGGTTTGGGAAGAACTCCTCAAAGATCTGCCTGAAGTA] [-] EMBL FR0056338 [TCAACAACCT TTTATTTATNTGATTCTTCATTTTACCATTTTTTTTAAAATTGAAATCAAGGGGTATACTGACAAAAAAAGGGCCCAGAGGCCCACACCAAAAATATTAAAACCAATATTTTCATGGATATGGAAGCCTAACAAGGTAACCAAGAGATGAGAAACAAATTGGATGATAGCTATGTTTTTAGTGTTTTTTTTACAGCCAATTTAAGACACGGGTCAAAACCGACCCGTTAACATCAGAGATGGTAACAGGAAAAGAACACAAGAGGAGGGTTAATGTCATATTCTATTCGCTAATTAACACAGTGCAATTCTGGCCTGCAAGAAAACCTAAACAGAAGTGTTGCAATTATTCTGACT GTTGTGTGATTATAATGCGAGGGAGTTGCACCCCGTAGGGTAGATTAGCTAGAATAGCTACAGGGGGCGGATGCTCATTCTACTTTCT ] [+] EMBL CA329415 [ AACCTTTTATTTATTTATATGATTCTTCATTTTACCATTTTTTTTAAAATTGAAATCAAGGGGTATACTGACAAAAAAAGGGCCCAGAGGCCCACACCAAAAATATTAAAACCAATATTTTCATGGATATGGAAGCCTAACAAGGTAACCAAGAGATGAGAAACAAATTGGATGATAGCTATGTTTTTAGTGTTTTTTTTACAGCCAATTTAAGACACGGGTCAAAACCGACCCGTTAACATCAGAGATGGTAACAGGAAAAGAACACAAGAGGAGGGTTAATGTCATATTCTATTCGCTAATTAACACAGTGCAATTCTGGCCTGCAAGAAAACCTAAACAGAAGTGTTGCAATTATTCTGACTAGTTGTGTGATTATAATGCGAGGGAGTTGCACCCCGTAGGGTAGATTAGCTAGAATAGCTACAGGGGGCGGATGCTCATTCTACTTTCTCTGGCTCATAGAAAGGGAGAGTCCGAGCTGAGGGGTCCGTGGCCTTTAGCCACTTTGGCATCCAGTAATGAGGAAGCCATTTAGCCTGGTTTGGGAAGAACTCCTCAAAGATCTGCCTGAAGTA] consensusID : consensus_1696#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTAAAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACACAACAACCTTTTATTTATTTATATGATTCTTCATTTTACCATTTTTTTTAAAATTGAAATCAAGGGGTATACTGACAAAAAAAGGGCCCAGAGGCCCACACCAAAAATATTAAAACCAATATTTTCATGGATATGGAAGCCTAACAAGGTAACCAAGAGATGAGAAACAAATTGGATGATAGCTATGTTTTTAGTGTTTTTTTTACAGCCAATTTAAGACACGGGTCCCCTTCATGGCCGTTAACATCAGAGATGGTAACAGGAAAAGAATCTTGATCGG] [-] EMBL CA588574 [TTTTTTTTTTTTTTTTTTTTTTTTAAAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACACAACAACCTTTTATTTATTTATATGATTCTTCATTTTACCATTTTTTTTAAAATTGAAATCAAGGGGTATACTGACAAAAAAAGGGCCCAGAGGCCCACACCAAAAATATTAAAACCAATATTTTCATGGATATGGAAGCCTAACAAGGTAACCAAGAGATGAGAAACAAATTGGATGATAGCTATGTTTTTAGTGTTTTTTTTACAGCCAATTTAAGACACGGGTCCCCTTCATGGCCGTTAACATCAGAGATGGTAACAGGAAAAGAATCTTGATCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1696#0 ------------------------------------------------------------ consensus_1696#1 TTTTTTTTTTTTTTTTTTTTTTTTAAAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_1696#0 ---------------------------------TCAACAACCT---ATTTATTTATNTGA 24 consensus_1696#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACACAACAACCTTTTATTTATTTATATGA 120 ********* ********** *** consensus_1696#0 TTCTTCATTTTACCATTTTTTTTAAAATTGAAATCAAGGGGTATACTGACAAAAAAAGGG 84 consensus_1696#1 TTCTTCATTTTACCATTTTTTTTAAAATTGAAATCAAGGGGTATACTGACAAAAAAAGGG 180 ************************************************************ consensus_1696#0 CCCAGAGGCCCACACCAAAAATATTAAAACCAATATTTTCATGGATATGGAAGCCTAACA 144 consensus_1696#1 CCCAGAGGCCCACACCAAAAATATTAAAACCAATATTTTCATGGATATGGAAGCCTAACA 240 ************************************************************ consensus_1696#0 AGGTAACCAAGAGATGAGAAACAAATTGGATGATAGCTATGTTTTTAGTGTTTTTTTTAC 204 consensus_1696#1 AGGTAACCAAGAGATGAGAAACAAATTGGATGATAGCTATGTTTTTAGTGTTTTTTTTAC 300 ************************************************************ consensus_1696#0 AGCCAATTTAAGACACGGGTCAAAACCG-ACCCGTTAACATCAGAGATGGTAACAGGAAA 263 consensus_1696#1 AGCCAATTTAAGACACGGGTCCCCTTCATGGCCGTTAACATCAGAGATGGTAACAGGAAA 360 ********************* * ***************************** consensus_1696#0 AGAACACAAGAGGAGGGTTAATGTCATATTCTATTCGCTAATTAACACAGTGCAATTCTG 323 consensus_1696#1 AGAATCTTGATCGG---------------------------------------------- 374 **** * consensus_1696#0 GCCTGCAAGAAAACCTAAACAGAAGTGTTGCAATTATTCTGACTAGTTGTGTGATTATAA 383 consensus_1696#1 ------------------------------------------------------------ consensus_1696#0 TGCGAGGGAGTTGCACCCCGTAGGGTAGATTAGCTAGAATAGCTACAGGGGGCGGATGCT 443 consensus_1696#1 ------------------------------------------------------------ consensus_1696#0 CATTCTACTTTCTCTGGCTCATAGAAAGGGAGAGTCCGAGCTGAGGGGTCCGTGGCCTTT 503 consensus_1696#1 ------------------------------------------------------------ consensus_1696#0 AGCCACTTTGGCATCCAGTAATGAGGAAGCCATTTAGCCTGGTTTGGGAAGAACTCCTCA 563 consensus_1696#1 ------------------------------------------------------------ consensus_1696#0 AAGATCTGCCTGAAGTA 580 consensus_1696#1 ----------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |