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Takifugu rubripes
cluster # 1735 cluster # 1735       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1735#0 length = 597 sequences # 2  
consensus_1735#1 length = 367 sequences # 1  

consensusID : consensus_1735#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 597
fasta sequence
                              [TGGGTCCAGTGAGCTTCATATCCGCCTGGTAAACGCGCATTTTAGCAGTCTGTAGTCCATCAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGATCCTGCCAGTCAAGGCTTCATGGTGGATCATTCTGAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGAGGGGAACGCTGCCGACCCCCTCGCACCTGCCCTGATGGAGGAAGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAGGAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAGAGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACCTCAGCAAGGGCTGGCAGGAGGTGCAGACCTCCAATGTATATAAGAAGACTCAGGAGACCTTTTCCCAGGCGGGACAGAAGACCAGCGCCGCCATCTCTACCGTGAGCGACGTGGTGACGAGGAAGCTGGGGGACATGAGGAGCTCTGCAGCCTTCAAGACCTTCGAAGATAAGATGGAGAACCTGAAGCATAAGGGGGTCGGTCCCCGGGGAGAACGGCGA]

[+] EMBL CA588890             [TGGGTCCAGTGAGCTTCATATCCGCCTGGTAAACGCGCATTTTAGCAGTCTGTAGTCCATCAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGATCCTGCCAGTCAAGGCTTCATGGTGGATCATTCTGAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGAGGGGAACGCTGCCGACCCCCTCGCACCTGCCCTGATGGAGGAAGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAGGAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAGAGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACCTCAGCAAGGGCTGGCAGGAGGTGCAGACCTCCAATGTATATAAGAAGACTCAGGAGACCTTTTCCCAGGCGGGACAGAAGACCAGCGCCGCCATCTCTACCGTGAGCGACGTGGTGACGAGGAA CTGGGGGACATGAGGAGCTCTGCAGCCTTCCAGACCTTTGAAGATAAGATGGAGAACCTGAAGCATAAAGGGGTCGGTCCCCGGGGAGAACGGCGA]
[+] EMBL BU806929             [         TGAGCTTCATATCCGCCTGGTAAACGCGCATTTTAGCAGTCTGTAGTCCATCAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGATCCTGCCAGTCAAGGCTTCATGGTGGATCATTCTGAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGAGGGGAACGCTGCCGACCCCCTCGCACCTGCCCTGATGGAGGATGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAGGAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAGAGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACCTCAGCAAGGGCTGGCAGGAGGTGCAGACCTCCAATGTATATAAGAAGACTCAGGAGACCTTTTCCCAGGCGGGACAGAAGACCAGCGCCGCCATCTCTACCGTGAGCGACGTGGTGACGAGGAAGCTGGGGGACATGAGGAGCTCTGCAGCCTTCAAGACCTTCGAAGATAAGATGGAGAACCTGAAGCATAAGGTGGTCGGT                  ]


>consensus_1735#0 TGGGTCCAGTGAGCTTCATATCCGCCTGGTAAACGCGCATTTTAGCAGTCTGTAGTCCAT CAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGAT CCTGCCAGTCAAGGCTTCATGGTGGATCATTCTGAGAGCCTTTCTGATGTTCCTGTTGGG GGGGCTGAGGGGAACGCTGCCGACCCCCTCGCACCTGCCCTGATGGAGGAAGAAGCCGAG GAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAGGAGATCAACACCTTACGCCAGGTCTTG TCTGCAAAAGAGAGACACGCCTCAGAGCTCAAGAGGAAACTGGGCTTGAGCCCGCTCAAC GAACTAAAGCAGAACCTCAGCAAGGGCTGGCAGGAGGTGCAGACCTCCAATGTATATAAG AAGACTCAGGAGACCTTTTCCCAGGCGGGACAGAAGACCAGCGCCGCCATCTCTACCGTG AGCGACGTGGTGACGAGGAAGCTGGGGGACATGAGGAGCTCTGCAGCCTTCAAGACCTTC GAAGATAAGATGGAGAACCTGAAGCATAAGGGGGTCGGTCCCCGGGGAGAACGGCGA



consensusID : consensus_1735#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 367
fasta sequence
                              [ACATTTTAGCAGTCTGTAGGCCATCAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGATCCTGCCAGTCAAGATATTAACTTGAACTCTCCTAACAAAGGCTTCATGGTGGATCATTCTGAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGTGGGGAACGCTGCCGACCCCCTCGCACCTGCCCTGATGGAGGAAGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAGGAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAGAGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACC]

[+] EMBL FR0061440            [ACATTTTAGCAGTCTGTAGGCCATCAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGATCCTGCCAGTCAAGATATTAACTTGAACTCTCCTAACAAAGGCTTCATGGTGGATCATTCTGAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGTGGGGAACGCTGCCGACCCCCTCGCACCTGCCCTGATGGAGGAAGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAGGAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAGAGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACC]


>consensus_1735#1 ACATTTTAGCAGTCTGTAGGCCATCAGACAAATATACGTTTTATTTAAAAAGGGTTCCAA CTGCAGCAGAACGACGCCATGGATCCTGCCAGTCAAGATATTAACTTGAACTCTCCTAAC AAAGGCTTCATGGTGGATCATTCTGAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGTG GGGAACGCTGCCGACCCCCTCGCACCTGCCCTGATGGAGGAAGAAGCCGAGGAGCTGCGC TGCGAACTGTCAAAGGTGGAGGAGGAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAA GAGAGACACGCCTCAGAGCTCAAGAGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAG CAGAACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1735#0      TGGGTCCAGTGAGCTTCATATCCGCCTGGTAAACGCGCATTTTAGCAGTCTGTAGTCCAT 60
consensus_1735#1      ------------------------------------ACATTTTAGCAGTCTGTAGGCCAT 24
                                                           ****************** ****

consensus_1735#0      CAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGAT 120
consensus_1735#1      CAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGAT 84
                      ************************************************************

consensus_1735#0      CCTGCCAGTCAAG---------------------------GCTTCATGGTGGATCATTCT 153
consensus_1735#1      CCTGCCAGTCAAGATATTAACTTGAACTCTCCTAACAAAGGCTTCATGGTGGATCATTCT 144
                      *************                           ********************

consensus_1735#0      GAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGAGGGGAACGCTGCCGACCCCCTCGCA 213
consensus_1735#1      GAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGTGGGGAACGCTGCCGACCCCCTCGCA 204
                      ********************************** *************************

consensus_1735#0      CCTGCCCTGATGGAGGAAGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAG 273
consensus_1735#1      CCTGCCCTGATGGAGGAAGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAG 264
                      ************************************************************

consensus_1735#0      GAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAG 333
consensus_1735#1      GAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAG 324
                      ************************************************************

consensus_1735#0      AGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACCTCAGCAAGGGCTGGCAG 393
consensus_1735#1      AGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACC----------------- 367
                      *******************************************                 

consensus_1735#0      GAGGTGCAGACCTCCAATGTATATAAGAAGACTCAGGAGACCTTTTCCCAGGCGGGACAG 453
consensus_1735#1      ------------------------------------------------------------
                                                                                  

consensus_1735#0      AAGACCAGCGCCGCCATCTCTACCGTGAGCGACGTGGTGACGAGGAAGCTGGGGGACATG 513
consensus_1735#1      ------------------------------------------------------------
                                                                                  

consensus_1735#0      AGGAGCTCTGCAGCCTTCAAGACCTTCGAAGATAAGATGGAGAACCTGAAGCATAAGGGG 573
consensus_1735#1      ------------------------------------------------------------
                                                                                  

consensus_1735#0      GTCGGTCCCCGGGGAGAACGGCGA 597
consensus_1735#1      ------------------------
                                              




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)