These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1735#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 597 fasta sequence [TGGGTCCAGTGAGCTTCATATCCGCCTGGTAAACGCGCATTTTAGCAGTCTGTAGTCCATCAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGATCCTGCCAGTCAAGGCTTCATGGTGGATCATTCTGAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGAGGGGAACGCTGCCGACCCCCTCGCACCTGCCCTGATGGAGGAAGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAGGAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAGAGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACCTCAGCAAGGGCTGGCAGGAGGTGCAGACCTCCAATGTATATAAGAAGACTCAGGAGACCTTTTCCCAGGCGGGACAGAAGACCAGCGCCGCCATCTCTACCGTGAGCGACGTGGTGACGAGGAAGCTGGGGGACATGAGGAGCTCTGCAGCCTTCAAGACCTTCGAAGATAAGATGGAGAACCTGAAGCATAAGGGGGTCGGTCCCCGGGGAGAACGGCGA] [+] EMBL CA588890 [TGGGTCCAGTGAGCTTCATATCCGCCTGGTAAACGCGCATTTTAGCAGTCTGTAGTCCATCAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGATCCTGCCAGTCAAGGCTTCATGGTGGATCATTCTGAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGAGGGGAACGCTGCCGACCCCCTCGCACCTGCCCTGATGGAGGAAGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAGGAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAGAGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACCTCAGCAAGGGCTGGCAGGAGGTGCAGACCTCCAATGTATATAAGAAGACTCAGGAGACCTTTTCCCAGGCGGGACAGAAGACCAGCGCCGCCATCTCTACCGTGAGCGACGTGGTGACGAGGAA CTGGGGGACATGAGGAGCTCTGCAGCCTTCCAGACCTTTGAAGATAAGATGGAGAACCTGAAGCATAAAGGGGTCGGTCCCCGGGGAGAACGGCGA] [+] EMBL BU806929 [ TGAGCTTCATATCCGCCTGGTAAACGCGCATTTTAGCAGTCTGTAGTCCATCAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGATCCTGCCAGTCAAGGCTTCATGGTGGATCATTCTGAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGAGGGGAACGCTGCCGACCCCCTCGCACCTGCCCTGATGGAGGATGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAGGAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAGAGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACCTCAGCAAGGGCTGGCAGGAGGTGCAGACCTCCAATGTATATAAGAAGACTCAGGAGACCTTTTCCCAGGCGGGACAGAAGACCAGCGCCGCCATCTCTACCGTGAGCGACGTGGTGACGAGGAAGCTGGGGGACATGAGGAGCTCTGCAGCCTTCAAGACCTTCGAAGATAAGATGGAGAACCTGAAGCATAAGGTGGTCGGT ] consensusID : consensus_1735#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [ACATTTTAGCAGTCTGTAGGCCATCAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGATCCTGCCAGTCAAGATATTAACTTGAACTCTCCTAACAAAGGCTTCATGGTGGATCATTCTGAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGTGGGGAACGCTGCCGACCCCCTCGCACCTGCCCTGATGGAGGAAGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAGGAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAGAGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACC] [+] EMBL FR0061440 [ACATTTTAGCAGTCTGTAGGCCATCAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGATCCTGCCAGTCAAGATATTAACTTGAACTCTCCTAACAAAGGCTTCATGGTGGATCATTCTGAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGTGGGGAACGCTGCCGACCCCCTCGCACCTGCCCTGATGGAGGAAGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAGGAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAGAGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1735#0 TGGGTCCAGTGAGCTTCATATCCGCCTGGTAAACGCGCATTTTAGCAGTCTGTAGTCCAT 60 consensus_1735#1 ------------------------------------ACATTTTAGCAGTCTGTAGGCCAT 24 ****************** **** consensus_1735#0 CAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGAT 120 consensus_1735#1 CAGACAAATATACGTTTTATTTAAAAAGGGTTCCAACTGCAGCAGAACGACGCCATGGAT 84 ************************************************************ consensus_1735#0 CCTGCCAGTCAAG---------------------------GCTTCATGGTGGATCATTCT 153 consensus_1735#1 CCTGCCAGTCAAGATATTAACTTGAACTCTCCTAACAAAGGCTTCATGGTGGATCATTCT 144 ************* ******************** consensus_1735#0 GAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGAGGGGAACGCTGCCGACCCCCTCGCA 213 consensus_1735#1 GAGAGCCTTTCTGATGTTCCTGTTGGGGGGGCTGTGGGGAACGCTGCCGACCCCCTCGCA 204 ********************************** ************************* consensus_1735#0 CCTGCCCTGATGGAGGAAGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAG 273 consensus_1735#1 CCTGCCCTGATGGAGGAAGAAGCCGAGGAGCTGCGCTGCGAACTGTCAAAGGTGGAGGAG 264 ************************************************************ consensus_1735#0 GAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAG 333 consensus_1735#1 GAGATCAACACCTTACGCCAGGTCTTGTCTGCAAAAGAGAGACACGCCTCAGAGCTCAAG 324 ************************************************************ consensus_1735#0 AGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACCTCAGCAAGGGCTGGCAG 393 consensus_1735#1 AGGAAACTGGGCTTGAGCCCGCTCAACGAACTAAAGCAGAACC----------------- 367 ******************************************* consensus_1735#0 GAGGTGCAGACCTCCAATGTATATAAGAAGACTCAGGAGACCTTTTCCCAGGCGGGACAG 453 consensus_1735#1 ------------------------------------------------------------ consensus_1735#0 AAGACCAGCGCCGCCATCTCTACCGTGAGCGACGTGGTGACGAGGAAGCTGGGGGACATG 513 consensus_1735#1 ------------------------------------------------------------ consensus_1735#0 AGGAGCTCTGCAGCCTTCAAGACCTTCGAAGATAAGATGGAGAACCTGAAGCATAAGGGG 573 consensus_1735#1 ------------------------------------------------------------ consensus_1735#0 GTCGGTCCCCGGGGAGAACGGCGA 597 consensus_1735#1 ------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |