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Takifugu rubripes
cluster # 1736 cluster # 1736       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1736#0 length = 645 sequences # 2  
consensus_1736#1 length = 322 sequences # 1  

consensusID : consensus_1736#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 645
fasta sequence
                              [GTCTTCTCAGAAAGCCTCACCTTTGTTATTTTGGGGGAAAACGCGCAGATTTGTATTCTGTGGGGCCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTAATGTGCGCTTCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAGCAGGGTTTACAGTGTATCACTTCCACAACTAACTGTTGGGACAGTGACCTGCGTCCTCACCAGTACACTCCCAGTGGTCCAGAGGAGCTTCATGTGACTGTGGACTTCAGGCGGGACAGGAGAAGACAACTGCAGCCTGTCTTGCACATCAGCTGGAAGTTAAAGGACGACGGGAGCATTCACTTTCTCAACGCCACTGAGCTTCATGTCCTAGAAGCATCCACCAACCAGAACTTGTGTGTCCGATACTCATTCAAAGACAAGCTGCCCATGAGAAGTCCAGCAAAAGAGATGTGGTCGTTCTCAGCTGACGTAGTTGTCAACCCGGATCAGATCTACACGGTCTCTGTCTACAACATCCCCAAACCAGAGTTCAACCACAACAACTATAAGGTCGACACACTTGTCAGAGGTTCTGGGTGNTAAGAGAAGACTATGAAACACACACAAGTCTGCATGGAACAAGGGAGTNTN]

[+] EMBL FR0058362            [GTCTTCTCAGAAAGCCTCACCTTTGTTATTTTGGGGGAAAACGCGCAGATTTGTATTCTGTGGGGCCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTAATGTGCGCTTCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAGCAGGGTTTACAGTGTATCACTTCCACAACTAACTGTTGGGACAGTGACCTGCGTCCTCACCAGTACACTCCCAGTGGTCCAGAGGAGCTTCATGTGACTGTGGACTTCAGGCGGGACAGGAGAAGACAACTGCAGCCTGTCTTGCACATCAGCTGTTAGTTAAAGGACGACGGGAGCATTCAC                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CA588258             [                                                                                                                                                                         AGCAGGGTTTACAGTGTATCACTTCCACAACTAACTGTTGGGACAGTGACCTGCGTCCTCACCAGTACACTCCCAGTGGTCCAGAGGAGCTTCATGTGACTGTGGACTTCAGGCGGGACAGGAGAAGACAACTGCAGCCTGTCTTGCACATTTTTTGGAAGTTAAAGGACGACGGTAGTATTCACTTTCTCAACGCCACTGAGCTTCATGTCCTAGAAGCATCCACCAACCAGAACTTGTGTGTCCGATACTCATTCAAAGACAAGCTGCCCATGAGAAGTCCAGCAAAAGAGATGTGGTCGTTCTCAGCTGACGTAGTTGTCAACCCGGATCAGATCTACACGGTCTCTGTCTACAACATCCCCAAACCAGAGTTCAACCACAACAACTATAAGGTCGACACACTTGTCAGAGGTTCTGGGTGNTAAGAGAAGACTATGAAACACACACAAGTCTGCATGGAACAAGGGAGTNTN]


>consensus_1736#0 GTCTTCTCAGAAAGCCTCACCTTTGTTATTTTGGGGGAAAACGCGCAGATTTGTATTCTG TGGGGCCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTAATGTGCGCT TCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAGCAGGGTTTA CAGTGTATCACTTCCACAACTAACTGTTGGGACAGTGACCTGCGTCCTCACCAGTACACT CCCAGTGGTCCAGAGGAGCTTCATGTGACTGTGGACTTCAGGCGGGACAGGAGAAGACAA CTGCAGCCTGTCTTGCACATCAGCTGGAAGTTAAAGGACGACGGGAGCATTCACTTTCTC AACGCCACTGAGCTTCATGTCCTAGAAGCATCCACCAACCAGAACTTGTGTGTCCGATAC TCATTCAAAGACAAGCTGCCCATGAGAAGTCCAGCAAAAGAGATGTGGTCGTTCTCAGCT GACGTAGTTGTCAACCCGGATCAGATCTACACGGTCTCTGTCTACAACATCCCCAAACCA GAGTTCAACCACAACAACTATAAGGTCGACACACTTGTCAGAGGTTCTGGGTGNTAAGAG AAGACTATGAAACACACACAAGTCTGCATGGAACAAGGGAGTNTN



consensusID : consensus_1736#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 322
fasta sequence
                              [TGGGTTAACGTCTTCTCAGAAAGCCTCACCTTTGTTATTTTAAAGGAAAACGCGCAGATTTGTATTCTGTGGGGTCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTAATGTGCGCTTCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAGCAGGGTTTACAGTGTATCACTTCCACAAGTGAGTCAACTTTGACCTTCATCATTGTCATAAATATGTAGGACCAAGTCTTCCANAGTGTGTGCGTCTGTGCGTGTGTGTGTCTGTAGCTAACTGTTGGGACAGTGACCTGCG]

[+] EMBL FR0058151            [TGGGTTAACGTCTTCTCAGAAAGCCTCACCTTTGTTATTTTAAAGGAAAACGCGCAGATTTGTATTCTGTGGGGTCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTAATGTGCGCTTCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAGCAGGGTTTACAGTGTATCACTTCCACAAGTGAGTCAACTTTGACCTTCATCATTGTCATAAATATGTAGGACCAAGTCTTCCANAGTGTGTGCGTCTGTGCGTGTGTGTGTCTGTAGCTAACTGTTGGGACAGTGACCTGCG]


>consensus_1736#1 TGGGTTAACGTCTTCTCAGAAAGCCTCACCTTTGTTATTTTAAAGGAAAACGCGCAGATT TGTATTCTGTGGGGTCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTA ATGTGCGCTTCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAG CAGGGTTTACAGTGTATCACTTCCACAAGTGAGTCAACTTTGACCTTCATCATTGTCATA AATATGTAGGACCAAGTCTTCCANAGTGTGTGCGTCTGTGCGTGTGTGTGTCTGTAGCTA ACTGTTGGGACAGTGACCTGCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1736#0      ---------GTCTTCTCAGAAAGCCTCACCTTTGTTATTTTGGGGGAAAACGCGCAGATT 51
consensus_1736#1      TGGGTTAACGTCTTCTCAGAAAGCCTCACCTTTGTTATTTTAAAGGAAAACGCGCAGATT 60
                               ********************************   ****************

consensus_1736#0      TGTATTCTGTGGGGCCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTA 111
consensus_1736#1      TGTATTCTGTGGGGTCGCGTTTGTATCAAGATGAGTATCAACGCAGTGCTGCTGCTGTTA 120
                      ************** *********************************************

consensus_1736#0      ATGTGCGCTTCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAG 171
consensus_1736#1      ATGTGCGCTTCTGTGTCCGCCGTCGGGATCCTAACATGGCCGCCGCTCAACTGCAGCCAG 180
                      ************************************************************

consensus_1736#0      CAGGGTTTACAGTGTATCACTTCCACAACTAACT--GTTGGGACAGTGACCTGCGTCCTC 229
consensus_1736#1      CAGGGTTTACAGTGTATCACTTCCACAAGTGAGTCAACTTTGACCTTCATCATTGTCATA 240
                      **************************** * * *    *  ***  * * *   *** * 

consensus_1736#0      ACCAGTACACTCCCAGTGGTCCAGAGGAGCTTCATGTGACTGTGGACTTCAGGCGGGACA 289
consensus_1736#1      AATATGTAGGACCAAGTCTTCCANAG----TGTGTGCGTCTGTGCGTGT---GTGTGTCT 293
                      *  *       ** ***  **** **    *   ** * *****    *   * * * * 

consensus_1736#0      GGAGAAGACAACTGCAGCC-TGTCTTGCACATCAGCTGGAAGTTAAAGGACGACGGGAGC 348
consensus_1736#1      GTAGCTAACTGTTGGGACAGTGACCTGCG------------------------------- 322
                      * **   **   **   *  ** * ***                                

consensus_1736#0      ATTCACTTTCTCAACGCCACTGAGCTTCATGTCCTAGAAGCATCCACCAACCAGAACTTG 408
consensus_1736#1      ------------------------------------------------------------
                                                                                  

consensus_1736#0      TGTGTCCGATACTCATTCAAAGACAAGCTGCCCATGAGAAGTCCAGCAAAAGAGATGTGG 468
consensus_1736#1      ------------------------------------------------------------
                                                                                  

consensus_1736#0      TCGTTCTCAGCTGACGTAGTTGTCAACCCGGATCAGATCTACACGGTCTCTGTCTACAAC 528
consensus_1736#1      ------------------------------------------------------------
                                                                                  

consensus_1736#0      ATCCCCAAACCAGAGTTCAACCACAACAACTATAAGGTCGACACACTTGTCAGAGGTTCT 588
consensus_1736#1      ------------------------------------------------------------
                                                                                  

consensus_1736#0      GGGTGNTAAGAGAAGACTATGAAACACACACAAGTCTGCATGGAACAAGGGAGTNTN 645
consensus_1736#1      ---------------------------------------------------------
                                                                               




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)