|
These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1759#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 780 fasta sequence
[AAGCAGAGCGGAACAGGATGCAGGCTATCATTTGTGCGGTCGTGGGAGATGGAGCCGTGGNGAAAAACATGCTTACTCATCAGCTACACAACCAATGCCTTCCCTGGGGAGTACATCCCCACTGTATTTGACAACTACTCAGCTAATGTGATGGTAGACAGCAAACCAGTTAACCTGGGCCTCTGGGATACAGCTGGGCAGGAAGACTATGACAGGCTCCGCCCACTCTCCTACC-CACAGACGGATGTTTTTTTGATCTGTTTCTCCCTCGTGAGTCCAGCATCCTATGAAAACGTCAGAGCTAAGTGGTACCCTGAGGTCCGCCACCACTGCCCCTCCACACCCATCATCCTGGTAGGCACAAAGCTGGATCTAAGGGATGAGAAAGAAACAATTGAGAAGCTGAAAGAAAAGAAGCTGGCTCCAATCACCTATCCTCAGGGCCTGGCTCTGGCCAAGGAGATAGATGCAGTGAAATACCTGGAGTGCTCGGCCTTGACCCAGCGGGGTCTGAAGACTGTGTTTGATGAAGCCATTCGGGCAGTCCTCTGCCCACAGCCCACAAAGGTCAAGAAAAAGTCGTGCTTGCTGCTGTAAATGGTTTCCACTGCTGACCCTGGATGCAACTGTTAACTCCAAAGCTCTCAGTATTATTGTTGTAATAACTGCAGCCAACAATGTTTTGACTTTAAAATGAGATGTGCATACTTTTTTAAAAATAAAAATGCTTCAATTTACACATCGCTACATTCCATATTCAACACATATTATTGATATTTC]
[+] EMBL CA330647 [AAGCAGAGCGGAACAGGATGCAGGCTATCATTTGTGCGGTCGTGGGAGATGGAGCCGTGGNGAAAAACATGCTTACTCATCAGCTACACAACCAATGCCTTCCCTGGGGAGTACATCCCCACTGTATTTGACAACTACTCAGCTAATGTGATGGTAGACAGCAAACCAGTTAACCTGGGCCTCTGGGATACAGCTGGGCAGGAAGACTATGACAGGCTCCGCCCACTCTCCTACCTTTTAGACGGATGTTTTTTTGATCTGTTTCTCCCTCGTGAGTCCAGCATCCTATGAAAACGTCAGAGCTAAGTGGTACCCTGAGGTCCGCCACCACTGCCCCTCCACACCCATCATCCTGGTAGGCACAAAGCTGGATCTAAGGGATGAGAAAGAAACAATTGAGAAGCTGAAAGAAAAGAAGCTGGCTCCAATCACCTATCCTCAGGGCCTGGCTCTGGCCAAGGAGATAGATGCAGTGAAATACCTGGAGTGCTCGGCCTTGACCCAGCGGGGTCTGAAGACTGTGTTTGATGAAGCCAT ]
[-] EMBL CA588747 [ GTGGGAGATGGACCCGTGG GAAAAACATGCTTACTCATCAGCTACACAACCAATCCCTTCCCTGGGGAGTACATCCCCACTGTATTTGACAACTACTCAGCTAATGTGATGGTAGACAGCAAACCAGTTAACCTGGGCCTCTGGGATACAGCTGGGCAGGAAGACTATGACAGGCTCCGCCCACTCTCCTACC CACAGACGGATGTTTTTTTGATCTGTTTCTCCCTCGTGAGTCCAGCATCCTATGAAAACGTCAGAGCTAAGTGGTACCCTGAGGTCCGCCACCACTGCCCCTCCACACCCATCATCCTGGTAGGCACAAAGCTGGATTTAAGGGATGAGAAAGAAACAATTGAGAAGCTGAAAGAAAAGAAGCTGGCTCCAATCACCTATCCTCAGGGCCTGGCTCTGGCCAAGGAGATAGATGCAGTGAAATACCTGGAGTGCTCGGCCTTGACCCAGCGGGGTCTGAAGACTGTGTTTGATGAAGCCATTCGGGCAGTCCTCTGCCCACAGCCCACAAAGGTCAAGAAAAAGTCGTGCTTGCTGCTGTAAATGGTTTCCACTGCTGACCCTGGATGCAACTGTTAACTCCAAAGCTCTCAGTATTATTGTTGTAATAACTGCAGCCAACAATGTTTTGACTTTAAAATGAGATGTGCATACTTTTTTAAAAATAAAAATGCTTCAATTTACACATCGCTACATTCCATATTCAACACATATTATTGATATTTC]
consensusID : consensus_1759#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[CGCCCCCTCTCCTACCCACAGACGGATGTTTTTTTGATCTGTTTCTCCCTCGTGAGTCCAGCATCCTATGAAAACGTCAGAGCTAAGTGGTACCCTGAGGTCCGCCACCACTGCCCCTCCACACCCATCATCCTGGTAGGCACAAAGCTGGATCTAAGGGATGAGAAAGAAACAATTGAGAAGCTGAAAGAAAAGAAGCTGGCTCCAATCACCTATCCTCAGGGCCTGGCTCTGGCCAAGGAGATAGGTAAGACTCAAAGATGCAGTGAAATACCTGGAGTGCTCGGCCTTGACCCAGCGGGGTCTGAAGACTGTGTTTGATGAAGCCATTCGGGCAGTCCTCTGCCCACAGCCCACAAAGGTCAAGAAAAAGTCGTGCTTGCTGCTGTAAATGGTTTCCACTGCTGACCCTGGATGCAACTGTTAACTCCAAAGCTCT]
[+] EMBL CA845600 [CGCCCCCTCTCCTACCCACAGACGGATGTTTTTTTGATCTGTTTCTCCCTCGTGAGTCCAGCATCCTATGAAAACGTCAGAGCTAAGTGGTACCCTGAGGTCCGCCACCACTGCCCCTCCACACCCATCATCCTGGTAGGCACAAAGCTGGATCTAAGGGATGAGAAAGAAACAATTGAGAAGCTGAAAGAAAAGAAGCTGGCTCCAATCACCTATCCTCAGGGCCTGGCTCTGGCCAAGGAGATAGGTAAGACTCAAAGATGCAGTGAAATACCTGGAGTGCTCGGCCTTGACCCAGCGGGGTCTGAAGACTGTGTTTGATGAAGCCATTCGGGCAGTCCTCTGCCCACAGCCCACAAAGGTCAAGAAAAAGTCGTGCTTGCTGCTGTAAATGGTTTCCACTGCTGACCCTGGATGCAACTGTTAACTCCAAAGCTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1759#0 AAGCAGAGCGGAACAGGATGCAGGCTATCATTTGTGCGGTCGTGGGAGATGGAGCCGTGG 60
consensus_1759#1 ------------------------------------------------------------
consensus_1759#0 NGAAAAACATGCTTACTCATCAGCTACACAACCAATGCCTTCCCTGGGGAGTACATCCCC 120
consensus_1759#1 ------------------------------------------------------------
consensus_1759#0 ACTGTATTTGACAACTACTCAGCTAATGTGATGGTAGACAGCAAACCAGTTAACCTGGGC 180
consensus_1759#1 ------------------------------------------------------------
consensus_1759#0 CTCTGGGATACAGCTGGGCAGGAAGACTATGACAGGCTCCGCCCACTCTCCTACCCACAG 240
consensus_1759#1 ---------------------------------------CGCCCCCTCTCCTACCCACAG 21
***** ***************
consensus_1759#0 ACGGATGTTTTTTTGATCTGTTTCTCCCTCGTGAGTCCAGCATCCTATGAAAACGTCAGA 300
consensus_1759#1 ACGGATGTTTTTTTGATCTGTTTCTCCCTCGTGAGTCCAGCATCCTATGAAAACGTCAGA 81
************************************************************
consensus_1759#0 GCTAAGTGGTACCCTGAGGTCCGCCACCACTGCCCCTCCACACCCATCATCCTGGTAGGC 360
consensus_1759#1 GCTAAGTGGTACCCTGAGGTCCGCCACCACTGCCCCTCCACACCCATCATCCTGGTAGGC 141
************************************************************
consensus_1759#0 ACAAAGCTGGATCTAAGGGATGAGAAAGAAACAATTGAGAAGCTGAAAGAAAAGAAGCTG 420
consensus_1759#1 ACAAAGCTGGATCTAAGGGATGAGAAAGAAACAATTGAGAAGCTGAAAGAAAAGAAGCTG 201
************************************************************
consensus_1759#0 GCTCCAATCACCTATCCTCAGGGCCTGGCTCTGGCCAAGGAGATAG-------------A 467
consensus_1759#1 GCTCCAATCACCTATCCTCAGGGCCTGGCTCTGGCCAAGGAGATAGGTAAGACTCAAAGA 261
********************************************** *
consensus_1759#0 TGCAGTGAAATACCTGGAGTGCTCGGCCTTGACCCAGCGGGGTCTGAAGACTGTGTTTGA 527
consensus_1759#1 TGCAGTGAAATACCTGGAGTGCTCGGCCTTGACCCAGCGGGGTCTGAAGACTGTGTTTGA 321
************************************************************
consensus_1759#0 TGAAGCCATTCGGGCAGTCCTCTGCCCACAGCCCACAAAGGTCAAGAAAAAGTCGTGCTT 587
consensus_1759#1 TGAAGCCATTCGGGCAGTCCTCTGCCCACAGCCCACAAAGGTCAAGAAAAAGTCGTGCTT 381
************************************************************
consensus_1759#0 GCTGCTGTAAATGGTTTCCACTGCTGACCCTGGATGCAACTGTTAACTCCAAAGCTCTCA 647
consensus_1759#1 GCTGCTGTAAATGGTTTCCACTGCTGACCCTGGATGCAACTGTTAACTCCAAAGCTCT-- 439
**********************************************************
consensus_1759#0 GTATTATTGTTGTAATAACTGCAGCCAACAATGTTTTGACTTTAAAATGAGATGTGCATA 707
consensus_1759#1 ------------------------------------------------------------
consensus_1759#0 CTTTTTTAAAAATAAAAATGCTTCAATTTACACATCGCTACATTCCATATTCAACACATA 767
consensus_1759#1 ------------------------------------------------------------
consensus_1759#0 TTATTGATATTTC 780
consensus_1759#1 -------------
|
|||||||
| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |