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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1784#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 802 fasta sequence
[CATACAGAGTGATGAAATCGTATGGGGAAAGGTGTGGCCACCTTATCCAAACGTCACTGTGAATGACTCACTGGACTGGGATACCCAGATAGAGTTATACAGATCTTACACTGCTTTCCCTGACTTCCTGCGACCTGCCACAGCAAAGTGGTGGTTTCAAGAAATCAAGGACTTCTATGACAAGATCATGAAGTTTGACGGCTTGTGGATTGACATGAATGAACCTGTCACTTTCGTCTCTGGTACGGTTGGAAAAAAATGTCTTGGTGATCCACTTTTTGAAAACCCTCCTTACATGCCAGCTTTGGAAAGCAGATATCTTGGCCTAAACCACAAGACACTGTGCATGAACAGTGAGCAGATACTCAGTGATGGGAAGAAAGTGCGACACTACGATGTCCACAGCCTGTACGGATGGTCCCAGACCCAGCCTACCTATGATGCTATGCTGAACGTGACAGGCAAGAGAGGCATTGTGGTGACCAGGTCCACCTTCCCATCCAGTGGAAAATGGGCTGGACATTGGCTGGGAGACAACACTGCAGGCTGGGACCAGTTATACAAATCTATAATAGGCATGATGGAGTTCAGCCTGTTTGGTATCTCTTATACTGGGGGCCTGATATCTGTGGCTTCTTCAATGGAGGCGAGTATGAAATGGGTCTTCGCTGGATGCACCCGGGGGCATTTTACCCTTACTCACGCAGCCACAATGGGAAGGGAATTCGGGAGACAAGACCCTGTTGCCTGGGATGCCCAGTTTGCCAATTACTCCCGGGATGTCCTGAACATCCGATACTCT]
[+] EMBL CA591435 [CATACAGAGTGATGAAATCGTATGGGGAAAGGTGTGGCCACCTTATCCAAACGTCACTGTGAATGACTCACTGGACTGGGATACCCAGATAGAGTTATACAGATCTTACACTGCTTTCCCTGACTTCCTGCGACCTGCCACAGCAAAGTGGTGGTTTCAAGAAATCAAGGACTTCTATGACAAGATCATGAAGTTTGACGGCTTGTGGATTGACATGAATGAACCTGTCACTTTCGTCTCTGGTACGGTTGGAAAAAAATGTCTTGGTGATCCACTTTTTGAAAACCCTCCTTACATGCCAGCTTTGGAAAGCAGATATCTTGGCCTAAACCACAAGACACTGTGCATGAACAGTGAGCAGATACTCAGTGATGGGAAGAAAGTGCGACACTACGATGTCCACAGCCTGTACGGATGGTCCCAGACCCAGCCTACCTATGATGCTATGCTGAACGTGACAGGCAAGAGAGGCATTGTGGTGACCAGGTCCACCTTCCCATCCAGTGGAAAATGGGCTGGACATTGGCTGGGAGACAACACTGCAGGCTGGGACCAGTTATACAAATCTATAATAGGCATGATGGAGTTCAGCCTGTTTGGTATCTCTTATACTGGGG CTGATATCTGTGGCTTCTTCAATGATGCCGAGTATGAAATGTGTCTTCGCTGGATGCACCTGGGTGCATTTTACCCTTACTCACGCAACCACAATGGCAAGGG ATTCCGGAGACAAGACCCTGTTGCCTGGGATGCCCAGTTTGCCAATTACTCCCGGGATGTCCTGAACATCCGATACTCT]
[+] EMBL CA591417 [ TAGAGTTATACAGATCTTACACTGCTTTCCCTGACTTCCTGCGACCTGCCACAGCAAAGTGGTGGTTTCAAGAAATCAAGGACTTCTATGACAAGATCATGAAGTTTGACGGCTTGTGGATTGACATGAATGAACCTGTCACTTTCGTCTCTGGTACGGTTGGAAAAAAATGTCTTGGTGATCCACTTTTTGAAAACCCTCCTTACATGCCAGCTTTGGAAAGCAGATATCTTGGCCTAAACCACAAGACACTGTGCATGAACAGTGAGCAGATACTCAGTGATGGGAAGAAAGTGCGACACTACGATGTCCACAGCCTGTACGGATGGTCCCAGACCCAACCTACCTATGATGCTATGCTGAACGTGACAGGCAAAAGAGGCATTGTGGTGACCAGGTTCACCTTCCCATCCAGTGGAAAATGGGCTGGACATTGGCTGGGAGACAACACTGCAGGCTGGGACCAGTTATACAAATCTATAATAGGCATGATGGAGTTCAGCCTGTTTGGTATCTCTTATACTGGGGGCCTGATATCTGTGGCTTCTTCAATGGATGCGAGTATGAAATGGGTCTTCCCTGGATGCACCCTGGGGCATTTTACCCTTACTCACGCAGCCCCCATGGGAAGGGAATTCGGGAGACAAGACCCTGTT ]
consensusID : consensus_1784#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 488 fasta sequence
[GAGCTGAGCTTTTACATACTCAGGCATCTCCCAACAGTCAAGTGTATTGAGGGCGTGTCCTGCCACCAGTCACAAACCAAGAGCTTCTCTCATGAACATTCAGCATATCTTAACACTCTCCTCCACAGACTGGGGCTGATATCTGTGGCTTCTTCAATGATGCCGAGTATGAAATGTGTCTTCGCTGGATGCACCTGGGTGCATTTTACCCTTACTCACGCAACCACAATGGCAAGGGATTCCGGAGACAAGACCCTGTTGCCTGGGATGCCCAGTTTGCCAATTATTCCCGGGATGTCCTGAACATCCGATACTCTCTCCTGCCGTATTTGTACACACTGATGTTTGAAGCTCACACCANAGGAAGCACTGTCATCAGACCCATGTTGCATGAGTTTGTCCAGGATACANACACCTGGAATATCACANACAGTTCCTCTGGGGGACTGCCATGCTGATCACACCCGCCCTCGACAGGGGAGTCGTAN]
[+] EMBL FR0056874 [GAGCTGAGCTTTTACATACTCAGGCATCTCCCAACAGTCAAGTGTATTGAGGGCGTGTCCTGCCACCAGTCACAAACCAAGAGCTTCTCTCATGAACATTCAGCATATCTTAACACTCTCCTCCACAGACTGGGGCTGATATCTGTGGCTTCTTCAATGATGCCGAGTATGAAATGTGTCTTCGCTGGATGCACCTGGGTGCATTTTACCCTTACTCACGCAACCACAATGGCAAGGGATTCCGGAGACAAGACCCTGTTGCCTGGGATGCCCAGTTTGCCAATTATTCCCGGGATGTCCTGAACATCCGATACTCTCTCCTGCCGTATTTGTACACACTGATGTTTGAAGCTCACACCANAGGAAGCACTGTCATCAGACCCATGTTGCATGAGTTTGTCCAGGATACANACACCTGGAATATCACANACAGTTCCTCTGGGGGACTGCCATGCTGATCACACCCGCCCTCGACAGGGGAGTCGTAN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1784#0 CATACAGAGTGATGAAATCGTATGGGGAAAGGTGTGGCCACCTTATCCAAACGTCACTGT 60
consensus_1784#1 ------------------------------------------------------------
consensus_1784#0 GAATGACTCACTGGACTGGGATACCCAGATAGAGTTATACAGATCTTACACTGCTTTCCC 120
consensus_1784#1 ------------------------------------------------------------
consensus_1784#0 TGACTTCCTGCGACCTGCCACAGCAAAGTGGTGGTTTCAAGAAATCAAGGACTTCTATGA 180
consensus_1784#1 ------------------------------------------------------------
consensus_1784#0 CAAGATCATGAAGTTTGACGGCTTGTGGATTGACATGAATGAACCTGTCACTTTCGTCTC 240
consensus_1784#1 -------------------GAGCTGAGCTTTTACATACTCAGGCATCTCCCAACAGTCAA 41
* ** * ** **** * * ** * ***
consensus_1784#0 TGGTACGGTTGGAAAAAAATGTCTTGGTGATCCACTTTTTGAAAACCCTCCTTACATGCC 300
consensus_1784#1 GTGTA---TTGAGGGCGTGTCCTGCCACCAGTCACAAACCAAGAGCTTCTCTCATG---- 94
*** *** * * *** * * * ** *
consensus_1784#0 AGCTTTGGAAAGCAGATATCTTGGCCTAAACCACAAGACACTGTGCATGAACAGTGAGCA 360
consensus_1784#1 AACATT---CAGC--ATATCTTAACACTCTCCTCCACAGACTGGGGCTGATATCTGTG-G 148
* * ** *** ******* * ** * * * **** * *** ** *
consensus_1784#0 GATACTCAGTGATGGGAAGAAAGTGCGACACTACGATGTCCACAGCCTGTACGGATGGTC 420
consensus_1784#1 CTTCTTCAATGATGCCG----AGTATGAAAT----GTGTCTTCGCT------GGATGCAC 194
* *** ***** *** ** * **** * ***** *
consensus_1784#0 CCAGACCCAGCCTACCTATGATGCTATGCTGAACGTGACAGGCAAGAGAGGCATTGTGGT 480
consensus_1784#1 CTGGGTGCATTTTACCCTTACT--CACGC--AACCACAATGGCAAGGGA----TTCCGGA 246
* * ** **** * * * ** *** * ****** ** ** **
consensus_1784#0 GACCAGGTCCACCTTCCCATCCAGTGGAAAATGGGCTGGACATTGGCTGGGAGAC---AA 537
consensus_1784#1 GACAAGACCCTGTTGCCTG--GGATGCCCAGTTTGCCAATTATTCCCGGGATGTCCTGAA 304
*** ** ** * ** ** * * ** *** * ** * * **
consensus_1784#0 CACTGCAGGCTGGGACCAGTTATACAAATCTATAATAGGCATGATGGAGTTCAGCCTGTT 597
consensus_1784#1 CATCCGATACTCTCTCCTGCCGTATTTGTACACACTGATGTT--TGAAGCTCACACCANA 362
** * ** ** * ** * * * * * ** ** *** *
consensus_1784#0 TGGTATCTCTTATACTGGGGGCCTGATATCTGTGGCTTCTTCAATGGAGGCGAGTATGAA 657
consensus_1784#1 -GGAAGCACTGTCATCAGACCCATGTTGCATG-AGTTTGTCCAGGATACANACACCTGGA 420
** * * ** * * * ** * ** * ** * ** * ** *
consensus_1784#0 ATGGGTCTTCGCTGGATGCACCCGGGGGCATTTTACCCTTACTCACGCAGCCACAATGGG 717
consensus_1784#1 ATA---TCACANACAGTTCCTCTGGGGGACTGCCATGCTGAT---CACACCCGCCCTCGA 474
** * * * * ***** * * ** * * ** ** * * *
consensus_1784#0 AAGGGAATTCGGGAGACAAGACCCTGTTGCCTGGGATGCCCAGTTTGCCAATTACTCCCG 777
consensus_1784#1 CAGGGGAGTCGTAN---------------------------------------------- 488
**** * ***
consensus_1784#0 GGATGTCCTGAACATCCGATACTCT 802
consensus_1784#1 -------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |