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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1786#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 812 fasta sequence
[CCATCAAAGGGGACACCTCAGGCCACTTCAGAAGGCTTCTGATCTCTCTCGCTCAGGGTAACCGTGATGAAAGGGAAAACGTCGACATTGCTCTGGCTAAACAGGACGCTCAGGCACTGTACGCTGCTGGAGAAAACAAGCTGGGGACAGACGAGTCCAAATTCAATGCCATTTTGTGTGCCAGGAGCAAGCCTCATCCCAGAGCAGTGTTTCAGGAGTACCAGAGCATGTGTGGCAGAGATGTGGAGAAGAGCATCGGCAGGGAGATGTCAGGAGATCTGGAGAGTGGCATGTTGGCAGTAGTCAAGTGTATTAAAAACACTCCTGGCTACTTTGCGGAGAGGCTGTACAAGGCCATGAAGGGCGCTGGGACCAAAGACAGAACCCTGATTCGGATCATGGTCTCCCGTTCCGAGGTCGACATGTTGGATATTCGAAAGGAGTATGTGAGAAACTACGGAAAATCACTGTACACAGACATCTCTGGAGACACCTCAGGGGATTACAAGAAGCTCCTGCTGAAGCTATGTGGAGGCAGTGACTGAAAGGGCCGCACCGTTTGCTACAGTTTTGAATTCTATTTCCTCTAAATATCAGTTTTCTGCCTTTCATATCTGCACTATCAGCACGACTGCTGCATGCCATTAATGTACTCTCAATGCAACGTTTACCTAGTTTTTAAAAAAGTCTCATAGCTCCACATATATCTGTGCAAAAAGGTTTATTTTTATCCTATATTTTTGCAAAACATTAGATATTTGAATATAGAAGGCCATCCAATAGAGTTGCTGGAAAATACATATGAATTCATT]
[+] EMBL BU806547 [CCATCAAAGGGGACACCTCAGGCCACTTCAGAAGGCTTCTGATCTCTCTCGCTCAGGGTAACCGTGATGAAAGGGAAAACGTCGACATTGCTCTGGCTAAACAGGACGCTCAGGCACTGTACGCTGCTGGAGAAAACAAGCTGGGGACAGACGAGTCCAAATTCAATGCCATTTTGTGTGCCAGGAGCAAGCCTCATCCCAGAGCAGTGTTTCAGGAGTACCAGAGCATGTGTGGCAGAGATGTGGAGAAGAGCATCGGCAGGGAGATGTCAGGAGATCTGGAGAGTGGCATGTTGGCAGTAGTCAAGTGTATTAAAAACACTCCTGGCTACTTTGCGGAGAGGCTGTACAAGGCCATGAAGGGCGCTGGGACCAAAGACAGAACCCTGATTCGGATCATGGTCTCCCGTTCCGAGGTCGACATGTTGGATATTCGAAAGGAGTATGTGAGAAACTACGGAAAATCACTGTACACAGACATCTCTGGAGACACCTCAGGGGATTACAAGAAGCTCCTGCTGAAGCTA ]
[+] EMBL BU807773 [ AGATGTCAGGAGATCTGGAGAGTGGCATGTTGGCAGTAGTCAAGTGTATTAAAAACACTCCTGGCTACTTTGCGGAGAGGCTGTACAAGGCCATGAAGGGCGCTGGGACCAAAGACAGAACCCTGATTCGGATCATGGTCTCCCGTTCCGAGGTCGACATGTTGGATATTCGAAAGGAGTATGTGAGAAACTACGGAAAATCACTGTACACAGACATCTCTGGAGACACCTCAGGGGATTACAAGAAGCTCCTGCTGAAGCTATGTGGAGGCAGTGACTGAAAGGGCCGCACCGTTTGCTACAGTTTTGAATTCTATTTCCTCTAAATATCAGTTTTCTGCCTTTCATATCTGCACTATCAGCACGACTGCTGCATGCCATTAATGTACTCTCAATGCAACGTTTACCTAGTTTTTAAAAAAGTCTCATAGCTCCACATATATCTGTGCAAAAAGGTTTATTTTTATCCTATATTTTTGCAAAACATTAGATATTTGAATATAGAAGGCCATCCAATAGAGTTGCTGGAAAATACATATGAATTCATT]
consensusID : consensus_1786#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[GGTGTTAGCCGATAAGTACAAGAACATTAACCCAGATGGCAAACCCAAATAAGCTTCAAAAATATATCAGAAGTGCAGATGGGGTCGCTGTGAAGGTGTTGAAATGTTGACTAATGCAGCTGTAATATTGCTCCTTTCATCCTGGTACTTTTTTTTTTCTTCCGCCCTTTTTTTTTTGCAGTGGTGAATATTTTTTGAAGGGTAAATTAACGTGTTCACTGAGCTCCTGTGTGCCTTCCCATTTCAGTCAAGTGTATTAAAAACACTCCTGGCTACTTTGCGGAGAGGCTGTACAAGGCCATGAAGGGCGCTGGGACCAAAGACAGAACCCTGATTCGGATCATGGTCTCCCGTTCCGAGGTCGACATGTTGGATATTCGAAAGGAGTATGTGAGAAACTACGGAAAATCACTGTACACAGACATCTCTGGAGACACCTCAGGGGATTACAAGAAGCTCCTGCTGAAGCTATGTGGAGGCAGTGACTGAAAGGGCCGCACCGTTTGCTACAGTTTTGAATTCTATTTCCTCTAAATATCAGTTTTCTGCCTTTCATATCTGCACTATCAGCACGACTGCTGCATGCCATTAATGTACTCTCAATGCAACGTTTACCTAGTTTTTAAAAAAGTCTCATAGCTCCACATATATCTGTGCAAAAAGGT]
[-] EMBL CA588685 [GGTGTTAGCCGATAAGTACAAGAACATTAACCCAGATGGCAAACCCAAATAAGCTTCAAAAATATATCAGAAGTGCAGATGGGGTCGCTGTGAAGGTGTTGAAATGTTGACTAATGCAGCTGTAATATTGCTCCTTTCATCCTGGTACTTTTTTTTTTCTTCCGCCCTTTTTTTTTTGCAGTGGTGAATATTTTTTGAAGGGTAAATTAACGTGTTCACTGAGCTCCTGTGTGCCTTCCCATTTCAGTCAAGTGTATTAAAAACACTCCTGGCTACTTTGCGGAGAGGCTGTACAAGGCCATGAAGGGCGCTGGGACCAAAGACAGAACCCTGATTCGGATCATGGTCTCCCGTTCCGAGGTCGACATGTTGGATATTCGAAAGGAGTATGTGAGAAACTACGGAAAATCACTGTACACAGACATCTCTGGAGACACCTCAGGGGATTACAAGAAGCTCCTGCTGAAGCTATGTGGAGGCAGTGACTGAAAGGGCCGCACCGTTTGCTACAGTTTTGAATTCTATTTCCTCTAAATATCAGTTTTCTGCCTTTCATATCTGCACTATCAGCACGACTGCTGCATGCCATTAATGTACTCTCAATGCAACGTTTACCTAGTTTTTAAAAAAGTCTCATAGCTCCACATATATCTGTGCAAAAAGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1786#0 CCATCAAAGGGGACACCTCAGGCCACTTCAGAAGGCTTCTGATCTCTCTCGCTCAGGGTA 60
consensus_1786#1 ------------------------------------------------------GGTGTT 6
* **
consensus_1786#0 ACCGTGATGAAAGGGAAAACGTCGACATTGCTCTGGCTAAACAGGACGCTCAGGCACTGT 120
consensus_1786#1 AGC-CGATAAGTACAAGAACATTAACCCAGAT--GGCAAACCCAAATAAGCTTCAAAAAT 63
* * *** * * *** * ** * * *** ** * * * * *
consensus_1786#0 ACGCTGCTGGAGAAAACAAGCTGGGGACAGACGAGTCCAAATTCAATGCCATTTTGTGTG 180
consensus_1786#1 ATATCAGAAGTGCAGATGGGGTCGCTGTGAAGGTGTTGA-----AATGTTGACTAATGCA 118
* * * * * * * * * * ** * **** * **
consensus_1786#0 CCAGGAGCAAGCCTCATCCCAGAGCAGTGTTTCAGGAGTACCAGAGCATGTGTGGCAGAG 240
consensus_1786#1 GCTGTAATATTGCTCCTTTCATCCTGGTACTTTTTTTTTTCTTCCGCCCTTTTTTTTTTG 178
* * * * *** * ** ** ** * * ** * * *
consensus_1786#0 ATGTGGAGAAGAGCATCGGCAGGGAGATGTCAGGAGATC--TGGAGAGTGGCATG--TTG 296
consensus_1786#1 CAGTGGTGAATATTTTTTGAAGGGTAAATTAACGTGTTCACTGAGCTCCTGTGTGCCTTC 238
**** *** * * * **** * * * * * ** ** * ** **
consensus_1786#0 GCAGT--AGTCAAGTGTATTAAAAACACTCCTGGCTACTTTGCGGAGAGGCTGTACAAGG 354
consensus_1786#1 CCATTTCAGTCAAGTGTATTAAAAACACTCCTGGCTACTTTGCGGAGAGGCTGTACAAGG 298
** * *****************************************************
consensus_1786#0 CCATGAAGGGCGCTGGGACCAAAGACAGAACCCTGATTCGGATCATGGTCTCCCGTTCCG 414
consensus_1786#1 CCATGAAGGGCGCTGGGACCAAAGACAGAACCCTGATTCGGATCATGGTCTCCCGTTCCG 358
************************************************************
consensus_1786#0 AGGTCGACATGTTGGATATTCGAAAGGAGTATGTGAGAAACTACGGAAAATCACTGTACA 474
consensus_1786#1 AGGTCGACATGTTGGATATTCGAAAGGAGTATGTGAGAAACTACGGAAAATCACTGTACA 418
************************************************************
consensus_1786#0 CAGACATCTCTGGAGACACCTCAGGGGATTACAAGAAGCTCCTGCTGAAGCTATGTGGAG 534
consensus_1786#1 CAGACATCTCTGGAGACACCTCAGGGGATTACAAGAAGCTCCTGCTGAAGCTATGTGGAG 478
************************************************************
consensus_1786#0 GCAGTGACTGAAAGGGCCGCACCGTTTGCTACAGTTTTGAATTCTATTTCCTCTAAATAT 594
consensus_1786#1 GCAGTGACTGAAAGGGCCGCACCGTTTGCTACAGTTTTGAATTCTATTTCCTCTAAATAT 538
************************************************************
consensus_1786#0 CAGTTTTCTGCCTTTCATATCTGCACTATCAGCACGACTGCTGCATGCCATTAATGTACT 654
consensus_1786#1 CAGTTTTCTGCCTTTCATATCTGCACTATCAGCACGACTGCTGCATGCCATTAATGTACT 598
************************************************************
consensus_1786#0 CTCAATGCAACGTTTACCTAGTTTTTAAAAAAGTCTCATAGCTCCACATATATCTGTGCA 714
consensus_1786#1 CTCAATGCAACGTTTACCTAGTTTTTAAAAAAGTCTCATAGCTCCACATATATCTGTGCA 658
************************************************************
consensus_1786#0 AAAAGGTTTATTTTTATCCTATATTTTTGCAAAACATTAGATATTTGAATATAGAAGGCC 774
consensus_1786#1 AAAAGGT----------------------------------------------------- 665
*******
consensus_1786#0 ATCCAATAGAGTTGCTGGAAAATACATATGAATTCATT 812
consensus_1786#1 --------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |