These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1795#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 709 fasta sequence [AATAATCAGGTTTTCTGCGCGACATACGTGCTGGATACGATGCGCCATTCAAAGAGGATGCGCTCCCCTGGAGTGTGGCTGGATGAATACTGCTGGGAAGAGAGAATAGACTTTCATAAACGGAGACGGCGGGATTCACACAGCAGCGAGAGAGAAAATAGAGCCAGAAGAGCCCCCCATCAGCACAGGACATATAACGGACATTACTTGGAAGCTCGCAACTTAAACCAAAGGTTGATGGTTTGGGAAGGACACAATATGGACATTGCCTATGAAGAGGACAGGCATGATAGCTTTGCCAAAGACAGGAGACCGCGACTGGCACCACTACAGCAAATCATCTGGACGTAGTGGTCGGAGTGGCCGCAGCAGGCGTAGCAGCCGCCGGCACAGAGACAGGAAGCAGCAACGTAGCCGCTCTCGCCTCCGGTCCGCCTCGAGGAGGAGCCGTCACCGCAGGAGCAGGAAAAGATCCAGGAGTTTTGAGGATGATGACGAGGGTCACCTCATCTATCACATTGGAGACATGCTGAGAGCCAGATATGAGATTGTGTGTACACTAGGAGAAGGTGCCTTTGGGAAGGTGGTTGAATGCATTGATCATAAATATAAAGATGCCCATGTGGCTCTGAAGATCATAAAAAATATTGATCGTTACCGTGAGGCTGCTTTGTCAGAGGTGCAGGTGCTGGAGCAGCTGAAAGCTCTC] [+] EMBL FR0058512 [AATAATCAGGTTTTCTGCGCGACATACGTGCTGGATACGATGCGCCATTCAAAGAGGATGCGCTCCCCTGGAGTGTGGCTGGATGAATACTGCTGGGAAGAGAGAATAGACTTTCATAAACGGAGACGGCGGGATTCACACAGCAGCGAGAGAGAAAATAGAGCCAGAAGAGCCCCCCATCAGCACAGGACATATAACGGACATTACTTGGAAGCTCGCAACTTAAACCAAAGGTTGATGGTTTGGGAAGGACACAATATGGACATTGCCTATGAAGAGGACAGGCATGATAGCTTTGCCAAAGACAGGAGACCGCGACTGGCACCACTACAGC ] [+] EMBL CA590295 [ GACACAATATGGACATTGCCTATGAAGAGGACAGTCATGATAGCTTTGCCAAAGACA GAGACCGCGACTGGCACCACTACAGCAAATCATCTGGACGTAGTGGTCGGAGTGGCCGCAGCAGGCGTAGCAGCCGCCGGCACAGAGACAGGAAGCAGCAACGTAGCCGCTCTCGCCTCCGGTCCGCCTCGAGGAGGAGCCGTCACCGCAGGAGCAGGAAAAGATCCAGGAGTTTTGAGGATGATGACGAGGGTCACCTCATCTATCACATTGGAGACATGCTGAGAGCCAGATATGAGATTGTGTGTACACTAGGAGAAGGTGCCTTTGGGAAGGTGGTTGAATGCATTGATCATAAATATAAAGATGCCCATGTGGCTCTGAAGATCATAAAAAATATTGATCGTTACCGTGAGGCTGCTTTGTCAGAGGTGCAGGTGCTGGAGCAGCTGAAAGCTCTC] consensusID : consensus_1795#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [TTTCCAGGACTTAATAATCACCACAATTAGCAGCGTAAACACGCATCTCTAAATTTTCTTTGTATAAATCCAATCTTACAAATCGCTTCATACTAGAACTACTCCTCCACCAGCGAGCTAGCTTCGCGGAATATACTCTTTTTAACATCCTATTAATGATCAACGTTGAAACCTTATTTTACAGTTAGGAAACATTGTTTGGACGCTGCACAGCCTGTATACGACTGCTGCAACCAGTCAGCAAATATGATGCGCCATTCAAAGAGGATGCGCTCCCCTGGAGTGTGGCTGGATGAATACTGCTGGGAAGAGAGAATAGACTTTCATAAACGGAGACGGCGGGATTCACACAGCAGCGAGAGAGAAAATAGAGCCAGAAGAGCCCCCCATCAGCACAGGACATATAACGGACATTACTTGGAAGCTCGCAACTTAAACCAAAGGTTGATGTTTTGGGAAGGACACAATATGGACATTGCCTATGAAGAGGACAGTCATGATAGCTTTGCCAAAGACAGAGACCGCGACTGGCACCACTACAGCAAATCATCTGGACGTAGTGGTCGGAGTGGCCGCAGCAGGCGTAGCAGCCGCCGGCACAGAGACAGGAAGCAGCAA] [+] EMBL CA333305 [TTTCCAGGACTTAATAATCACCACAATTAGCAGCGTAAACACGCATCTCTAAATTTTCTTTGTATAAATCCAATCTTACAAATCGCTTCATACTAGAACTACTCCTCCACCAGCGAGCTAGCTTCGCGGAATATACTCTTTTTAACATCCTATTAATGATCAACGTTGAAACCTTATTTTACAGTTAGGAAACATTGTTTGGACGCTGCACAGCCTGTATACGACTGCTGCAACCAGTCAGCAAATATGATGCGCCATTCAAAGAGGATGCGCTCCCCTGGAGTGTGGCTGGATGAATACTGCTGGGAAGAGAGAATAGACTTTCATAAACGGAGACGGCGGGATTCACACAGCAGCGAGAGAGAAAATAGAGCCAGAAGAGCCCCCCATCAGCACAGGACATATAACGGACATTACTTGGAAGCTCGCAACTTAAACCAAAGGTTGATGTTTTGGGAAGGACACAATATGGACATTGCCTATGAAGAGGACAGTCATGATAGCTTTGCCAAAGACAGAGACCGCGACTGGCACCACTACAGCAAATCATCTGGACGTAGTGGTCGGAGTGGCCGCAGCAGGCGTAGCAGCCGCCGGCACAGAGACAGGAAGCAGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1795#0 ------------------------------------------------------------ consensus_1795#1 TTTCCAGGACTTAATAATCACCACAATTAGCAGCGTAAACACGCATCTCTAAATTTTCTT 60 consensus_1795#0 ------------------------------------------------------------ consensus_1795#1 TGTATAAATCCAATCTTACAAATCGCTTCATACTAGAACTACTCCTCCACCAGCGAGCTA 120 consensus_1795#0 ------------------------------------------------------------ consensus_1795#1 GCTTCGCGGAATATACTCTTTTTAACATCCTATTAATGATCAACGTTGAAACCTTATTTT 180 consensus_1795#0 ----------------------------AATAATCAGGTTTTCTGCGCGACATACGTGCT 32 consensus_1795#1 ACAGTTAGGAAACATTGTTTGGACGCTGCACAGCCTGTATACGACTGCTGCAACCAGTCA 240 * * * * * ** ** * * consensus_1795#0 G--GATACGATGCGCCATTCAAAGAGGATGCGCTCCCCTGGAGTGTGGCTGGATGAATAC 90 consensus_1795#1 GCAAATATGATGCGCCATTCAAAGAGGATGCGCTCCCCTGGAGTGTGGCTGGATGAATAC 300 * *** **************************************************** consensus_1795#0 TGCTGGGAAGAGAGAATAGACTTTCATAAACGGAGACGGCGGGATTCACACAGCAGCGAG 150 consensus_1795#1 TGCTGGGAAGAGAGAATAGACTTTCATAAACGGAGACGGCGGGATTCACACAGCAGCGAG 360 ************************************************************ consensus_1795#0 AGAGAAAATAGAGCCAGAAGAGCCCCCCATCAGCACAGGACATATAACGGACATTACTTG 210 consensus_1795#1 AGAGAAAATAGAGCCAGAAGAGCCCCCCATCAGCACAGGACATATAACGGACATTACTTG 420 ************************************************************ consensus_1795#0 GAAGCTCGCAACTTAAACCAAAGGTTGATGGTTTGGGAAGGACACAATATGGACATTGCC 270 consensus_1795#1 GAAGCTCGCAACTTAAACCAAAGGTTGATGTTTTGGGAAGGACACAATATGGACATTGCC 480 ****************************** ***************************** consensus_1795#0 TATGAAGAGGACAGGCATGATAGCTTTGCCAAAGACAGGAGACCGCGACTGGCACCACTA 330 consensus_1795#1 TATGAAGAGGACAGTCATGATAGCTTTGCCAAAGACAG-AGACCGCGACTGGCACCACTA 539 ************** *********************** ********************* consensus_1795#0 CAGCAAATCATCTGGACGTAGTGGTCGGAGTGGCCGCAGCAGGCGTAGCAGCCGCCGGCA 390 consensus_1795#1 CAGCAAATCATCTGGACGTAGTGGTCGGAGTGGCCGCAGCAGGCGTAGCAGCCGCCGGCA 599 ************************************************************ consensus_1795#0 CAGAGACAGGAAGCAGCAACGTAGCCGCTCTCGCCTCCGGTCCGCCTCGAGGAGGAGCCG 450 consensus_1795#1 CAGAGACAGGAAGCAGCAA----------------------------------------- 618 ******************* consensus_1795#0 TCACCGCAGGAGCAGGAAAAGATCCAGGAGTTTTGAGGATGATGACGAGGGTCACCTCAT 510 consensus_1795#1 ------------------------------------------------------------ consensus_1795#0 CTATCACATTGGAGACATGCTGAGAGCCAGATATGAGATTGTGTGTACACTAGGAGAAGG 570 consensus_1795#1 ------------------------------------------------------------ consensus_1795#0 TGCCTTTGGGAAGGTGGTTGAATGCATTGATCATAAATATAAAGATGCCCATGTGGCTCT 630 consensus_1795#1 ------------------------------------------------------------ consensus_1795#0 GAAGATCATAAAAAATATTGATCGTTACCGTGAGGCTGCTTTGTCAGAGGTGCAGGTGCT 690 consensus_1795#1 ------------------------------------------------------------ consensus_1795#0 GGAGCAGCTGAAAGCTCTC 709 consensus_1795#1 ------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |