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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1800#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 697 fasta sequence
[TTAATGTACGGCTTGGTACAAGAAACAGCGACCGTATCGTTTCAAGAAAATCTACATTCACAATGTCAGCTGCCGGTCCTGATAGTTCTGGTGCAATGTCGAGCAACAAGCGCCTCCAGCAGACCCAGGCTCAGGTGGATGAGGTGGTGGATATTATGCGCGTCAATGTAGACAAAGTGTTGGAGCGTGACCAGAAGTTGTCTGAACTCGACGACCGGGCAGATGCGCTGCAGGCCGGAGCCTCCCAGTTTGAAACCAGCGCTGCTAAACTAAAGAGGAAGTACTGGTGGAAAAACATGAAGATGTGGGGCATCCTGATAGCTGTAGTACTGATCATCATCATCATCATCATCGTTTGGAGTACTTCACAATAAACCAGCAGAGATGAGGAGTGAGGGAAACGATGGAGAGACGTGCACAGTTGATGTCTCGGAGATGCTGCTTGGTCAATGGCTACTGAGCTTCACAACGTTTTCCCTTCTCACAGGGGGCTTCATTCCTATCCTGTTGCTCACAGTGCGTGTGTGTGTGTGCGTGTGCGTGCGTGTGTGCGTGAGAGAGAGAGAGTCAATGCTTGGTAATAATTCTTTACACTGAATTTTACACTGAATGATGCAACAACGTATCCAACCATATTAAAGGTGTATCAATTAGCGTGCTATAACACATGCCAAAGAATAAAAGATGATGTAATTTA]
[+] EMBL CA591521 [TTAATGTACGGCTTGGTACAAGAAACAGCGACCGTATCCTTTCAAGAAAATCTACATTCACAATGTCAGCTGCCGGTCCTGATAGTTCTGGTGCAATGTCGAGCAACAAGCGCCTCCAGCAGACCCAGGCTCAGGTGGATGAGGTGGTGGATATTATGCGCGTCAATGTAGACAAAGTGTTGGAGCGTGACCAGAAGTTGTCTGAACTCGACGACCGGGCAGATGCGCTGCAGGCCGGAGCCTCCCAGTTTGAAACCAGCGCTGCTAAACTAAAGAGGAAGTACTGGTGGAAAAACATGAAGATGTGGGGCATCCTGATAGCTGTAGTACTGATCATCATCATCATCATCATCGTTTGGAGTACTTCACAATAAACCAGCAGAGATGAGGAGTGAGGGAAACGATGGAGAGACGTGCACAGTTGATGTCTCGGAGATGCTGCTTGGTCAATGGCTACTGAGCTTCACAACGTTTTCCCTTCTCACAGGGGGCTTCATTCCTATCCTGTTGCTCACAGTGCGTGTGTGTGTGTGCGTGTGCGTGCGTGTGTGCGTGAGAGAGAGAGAGTCAATGCTTGGTAATAATTCTTTACACTGAATTTTACACTGAATGATGCAACAACGTATCCAACCATATTAAAGGTGTATCAATTAGCGTGCTATAACACATGCCAAAGAATAAAAGATGATGTAATTTA]
[+] EMBL CA846507 [ CGTTTCAAGAAAATCTAC TTCAC TTGTCAGCTGCCGGTCCTGATAGTTCTGGTGCAATGTCGAGCAACAAGCGCCTCCAGCAGACCCAGGCTCAGGTGGATGAGGTGGTGGATATTATGCGCGTCAATGTAGACAAAGTGTTGGAGCGTGACCAGAAGTTGTCTGAACTCGACGACCGGGCAGATGCGCTGCAGGCCGGAGCCTCCCAGTTTGAAACCAGCGCTGCTAAACTAAAGAGGAAGTACTGGTGGAAAAACATGAAGATGTGGGGCATCCTGATAGCTGTAGTACTGATCATCATCATCATCATCATCGTTTGGAGTACTTCACAATAAACCAGCAGAGATGAGGAGTGAGGGAAACGATGGAGAGACGTGCACAGTTGATGTCTCGGAGATGCTGCTTGGTCAATGGCTACTGAGCTTCACAACGTTTTCCCTTCTCA ]
consensusID : consensus_1800#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence
[CCTTGACGACCGGGCAGATGCGCTGCAGGCCGGAGCCTCCTCTTATGAAACCAGCGCTGCTAAACTAAAGAGGAAGTACTGGTGGAAAAACATGAAGATGTGGGGCATCCTGATAGCTGTAGTACTGATCATCATCATCATCATCATCGTTTGGAGTACTTCACAATAAACCAGCAGAGATGAGGAGTGAGGGAAACGATGGAGAGACGTGCACAGTTGATGTCTCGGAGATGCTGCTTGGTCAATGGCTACTGAGCTTCACAACGTTTTCCCTTCTCACAGGGGGCTTCATTCCTATCCTGTTGCTCACAGTGCGTGTGTGTGTGTGTGTGTGCGTGTGTGTGCGTGTGCGTGTGTGTGTGTGCGTGAGAGAGAGAGAGAGAGAGAGAGTCNATGCTTGGTAATAATTCTTTACACTGAATTTT]
[+] EMBL CA846054 [CCTTGACGACCGGGCAGATGCGCTGCAGGCCGGAGCCTCCTCTTATGAAACCAGCGCTGCTAAACTAAAGAGGAAGTACTGGTGGAAAAACATGAAGATGTGGGGCATCCTGATAGCTGTAGTACTGATCATCATCATCATCATCATCGTTTGGAGTACTTCACAATAAACCAGCAGAGATGAGGAGTGAGGGAAACGATGGAGAGACGTGCACAGTTGATGTCTCGGAGATGCTGCTTGGTCAATGGCTACTGAGCTTCACAACGTTTTCCCTTCTCACAGGGGGCTTCATTCCTATCCTGTTGCTCACAGTGCGTGTGTGTGTGTGTGTGTGCGTGTGTGTGCGTGTGCGTGTGTGTGTGTGCGTGAGAGAGAGAGAGAGAGAGAGAGTCNATGCTTGGTAATAATTCTTTACACTGAATTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1800#0 TTAATGTACGGCTTGGTACAAGAAACAGCGACCGTATCGTTTCAAGAAAATCTACATTCA 60
consensus_1800#1 ------------------------------------------------------------
consensus_1800#0 CAATGTCAGCTGCCGGTCCTGATAGTTCTGGTGCAATGTCGAGCAACAAGCGCCTCCAGC 120
consensus_1800#1 ------------------------------------------------------------
consensus_1800#0 AGACCCAGGCTCAGGTGGATGAGGTGGTGGATATTATGCGCGTCAATGTAGACAAAGTGT 180
consensus_1800#1 ------------------------------------------------------------
consensus_1800#0 TGGAGCGTGACCAGAAGTTGTCTGAACTCGACGACCGGGCAGATGCGCTGCAGGCCGGAG 240
consensus_1800#1 -------------------------CCTTGACGACCGGGCAGATGCGCTGCAGGCCGGAG 35
** *******************************
consensus_1800#0 CCTCCCAGTTTGAAACCAGCGCTGCTAAACTAAAGAGGAAGTACTGGTGGAAAAACATGA 300
consensus_1800#1 CCTCCTCTTATGAAACCAGCGCTGCTAAACTAAAGAGGAAGTACTGGTGGAAAAACATGA 95
***** * **************************************************
consensus_1800#0 AGATGTGGGGCATCCTGATAGCTGTAGTACTGATCATCATCATCATCATCATCGTTTGGA 360
consensus_1800#1 AGATGTGGGGCATCCTGATAGCTGTAGTACTGATCATCATCATCATCATCATCGTTTGGA 155
************************************************************
consensus_1800#0 GTACTTCACAATAAACCAGCAGAGATGAGGAGTGAGGGAAACGATGGAGAGACGTGCACA 420
consensus_1800#1 GTACTTCACAATAAACCAGCAGAGATGAGGAGTGAGGGAAACGATGGAGAGACGTGCACA 215
************************************************************
consensus_1800#0 GTTGATGTCTCGGAGATGCTGCTTGGTCAATGGCTACTGAGCTTCACAACGTTTTCCCTT 480
consensus_1800#1 GTTGATGTCTCGGAGATGCTGCTTGGTCAATGGCTACTGAGCTTCACAACGTTTTCCCTT 275
************************************************************
consensus_1800#0 CTCACAGGGGGCTTCATTCCTATCCTGTTGCTCACAGTGCGTGTGTGTGTGTGCGTGTGC 540
consensus_1800#1 CTCACAGGGGGCTTCATTCCTATCCTGTTGCTCACAGTGCGTGTGTGTGTGTGTGTGTGC 335
***************************************************** ******
consensus_1800#0 GTGCGTGTGTGCGTG----------------------------AGAGAGAGAGAGTCAAT 572
consensus_1800#1 GTGTGTGTGCGTGTGCGTGTGTGTGTGTGCGTGAGAGAGAGAGAGAGAGAGAGAGTCNAT 395
*** ***** * *** ************** **
consensus_1800#0 GCTTGGTAATAATTCTTTACACTGAATTTTACACTGAATGATGCAACAACGTATCCAACC 632
consensus_1800#1 GCTTGGTAATAATTCTTTACACTGAATTTT------------------------------ 425
******************************
consensus_1800#0 ATATTAAAGGTGTATCAATTAGCGTGCTATAACACATGCCAAAGAATAAAAGATGATGTA 692
consensus_1800#1 ------------------------------------------------------------
consensus_1800#0 ATTTA 697
consensus_1800#1 -----
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |