These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1816#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [CGTTTTACCTTGCACCAACAACACCCTTCACACCGCAGCACCGCTAGGAACTTCCACATTTTATACCTCATGCTGAAGGTGGATTTTAAACAGACGGCCGAGAGGACGCAGCGCTCGACATGGTCAATGTAAACACTCAAGTCAGTTCAAGTGTGGAATTTCCATTTGACTCCTCACCGGCGGAGACGGCCAACATGAACGCGTCGAGCCACCTGGGGGCAGGTAGTCTGTGCGCCATCTGTGGAGACAGAGCCACGGGTAAACACTACGGGGCGTCCAGCTGCGACGGCTGCAAGGGCTTCTTCAGACGCAGCGTCCGCAAAAACCACATGTATTCCTGCAGGTTCAACAGGCAGTGCATCGTGGACAAAGACAAGCGCAATCAGTGCCGATACTGCAGGCTGAAAAAGTGCTTCAGAGCGGGCATGAAGAAAGAAGCTGTGCAGAATGAGAGAGACAGAATCAGCAC] [+] EMBL CA588347 [CGTTTTACCTTGCACCAACAACACCCTTCACACCGCAGCACCGCTAGGAACTTCCACATTTTATACCTCATGCTGAAGGTGGATTTTAAACAGACGGCCGAGAGGACGCAGCGCTCGACATGGTCAATGTAAACACTCAAGTCAGTTCAAGTGTGGAATTTCCATTTGACTCCTCACCGGCGGAGACGGCCAACATGAACGCGTCGAGCCACCTGGGGGCAGGTAGTCTGTGCGCCATCTGTGGAGACAGAGCCACGGGTAAACACTACGGGGCGTCCAGCTGCGACGGCTGCAAGGGCTTCTTCAGACGCAGCGTCCGCAAAAACCACATGTATTCCTGCAGGTTCAACAGGCAGTGCATCGTGGACAAAGACAAGCGCAATCAGTGCCGATACTGCAGGCTGAAAAAGTGCTTCAGAGCGGGCATGAAGAAAGAAGCTGTGCAGAATGAGAGAGACAGAATCAGCAC] consensusID : consensus_1816#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 317 fasta sequence [TTCTGGAGTTCGAGAACATGCAGGGGCTGGGGCTGGGCACAGACTCCTCACCGGCGGAGACGGCCAACATGAACGCGTCGAGCCACCTGGGGGCAGGTAGTCTGTGCGCCATCTGTGGAGACAGAGCCACGGGCAAACACTACGGNGCGTCCAGCTGCGACGGCTGCAAGGGCTTCTTCAGACGCAGCGTCCGCAAAAACCACATGTATTCCTGCAGGTTCAACAGGCAGTGCATCGTGGACAAAGACAAGCGCAATCAGTGCCGATACTGCAGGCTGAAAAAGTGCTTCAGAGCGGGCATGAAGAAAGAAGCTGTG] [+] EMBL FR0059148 [TTCTGGATTTCGAGAACATGCAGGTGCTGGGGCTGGGCACAGACTCCTCACCGGCGGAGACGCCCAACATGAACGCGTCGAGCCACCTGGGGGCAGGTAGTCTGTGCGCCATCTGTGGAGACAGAGCCACGGGTAAACACTACGGNGCGTCCAGCTGCGACGGCTGCAAGGGCTTCTTCAGACGCAGCGTCCGCAAAAACCACATGTATTCCTG ] [+] EMBL FR0059903 [ GGAGTTCGAGAACATGCAGGGGCTGCCGCTGGGCACAGACTCCTCACCGGCGGAGACGGCCAACATGAACGCGTCGAGCCACCTGGGGGCAGGTAGTCTGTGCGCCATCTGTGGAGACAGAGCCACGGGCAAACACTACGGGGCGTCCAGCTGCGACGGCTGCAAGGGCTTCTTCAGACGCAGCGTCCGCAAAAACCACATGTATTCCTGCAGGTTCAACAGGCAGTGCATCGTGGACAAAGACAAGCGCAATCAGTGCCGATACTGCAGGCTGAAAAAGTGCTTCAGAGCGGGCATGAAGAAAGAAGCTGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1816#0 CGTTTTACCTTGCACCAACAACACCCTTCACACCGCAGCACCGCTAGGAACTTCCACATT 60 consensus_1816#1 ------------------------------------------------------------ consensus_1816#0 TTATACCTCATGCTGAAGGTGGATTTTAAACAGACGGCCGAGAGGACGCAGCGCTCGACA 120 consensus_1816#1 ------------------------------------------------------------ consensus_1816#0 TGGTCAATGTAAACACTCAAGTCAGTTCAAGTG-TGGAATTTCCATTTGACTCCTCACCG 179 consensus_1816#1 -------TTCTGGAGTTCGAGAACATGCAGGGGCTGGGGCTGGGCACAGACTCCTCACCG 53 * ** ** * ** * * *** * ************ consensus_1816#0 GCGGAGACGGCCAACATGAACGCGTCGAGCCACCTGGGGGCAGGTAGTCTGTGCGCCATC 239 consensus_1816#1 GCGGAGACGGCCAACATGAACGCGTCGAGCCACCTGGGGGCAGGTAGTCTGTGCGCCATC 113 ************************************************************ consensus_1816#0 TGTGGAGACAGAGCCACGGGTAAACACTACGGGGCGTCCAGCTGCGACGGCTGCAAGGGC 299 consensus_1816#1 TGTGGAGACAGAGCCACGGGCAAACACTACGGNGCGTCCAGCTGCGACGGCTGCAAGGGC 173 ******************** *********** *************************** consensus_1816#0 TTCTTCAGACGCAGCGTCCGCAAAAACCACATGTATTCCTGCAGGTTCAACAGGCAGTGC 359 consensus_1816#1 TTCTTCAGACGCAGCGTCCGCAAAAACCACATGTATTCCTGCAGGTTCAACAGGCAGTGC 233 ************************************************************ consensus_1816#0 ATCGTGGACAAAGACAAGCGCAATCAGTGCCGATACTGCAGGCTGAAAAAGTGCTTCAGA 419 consensus_1816#1 ATCGTGGACAAAGACAAGCGCAATCAGTGCCGATACTGCAGGCTGAAAAAGTGCTTCAGA 293 ************************************************************ consensus_1816#0 GCGGGCATGAAGAAAGAAGCTGTGCAGAATGAGAGAGACAGAATCAGCAC 469 consensus_1816#1 GCGGGCATGAAGAAAGAAGCTGTG-------------------------- 317 ************************ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |