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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1826#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 473 fasta sequence
[GAAAAGTGGCAAGACTTTTTAACGTTATAGTTTGGCTCAATTCACCATTTCGATAACAATGTTTACCAAGTATCCTTTCCCCATCATCAAGAAAGCCTGGGAACTTGGTTTGATGAATGGACACATTCCACAGGAATATGGTGGAATGGGTTTGACGATCTTTGACAACTGTCTAATCACAGAAGAGTTGGCTTATGGGTGCACGGGAGTGCAAACTGCTATTGAAGCAAACTCTCTGGGGCAAATGCCTGTTATATTAGCTGGCAATGATGCACAGAAGAGAAAATATTTGGGAAGATTGATTGAAGAGCCTCTCATGTGTGCATACTGTGTTACAGAACCTGGAGCAGGCTCAGATGTGGCTGGCATCAAGACCCGAGCTGTGAAGATGGGAGATGAGTATGTTGTTAATGGGCAGAAGATGTGGATCACCAATGGTGGAAAGGCTAACTGGTACTTCCTCCTGGCTCGGA]
[+] EMBL BU806230 [GAAAAGTGGCAAGACTTTTTAACGTTATAGTTTGGCTCAATTCACCATTTCGATAACAATGTTTACCAAGTATCCTTTCCCCATCATCAAGAAAGCCTGGGAACTTGGTTTGATGAATGGACACATTCCACAGGAATATGGTGGAATGGGTTTGACGATCTTTGACAACTGTCTAATCACAGAAGAGTTGGCTTATGGGTGCACGGGAGTGCAAACTGCTATTGAAGCAAACTCTCTGGGGCAAATGCCTGTTATATTAGCTGGCAATGATGCACAGAAGAGAAAATATTTGGGAAGATTGATTGAAGAGCCTCTCATGTGTGCATACTGTGTTACAGAACCTGGAGCAGGCTCAGATGTGGCTGGCATCAAGACCCGAGCTGTGAAGATGGGAGATGAGTATGTTGTTAATGGGCAGAAGATGTGGATCACCA ]
[+] EMBL BU808280 [ CAAGACTTTTTAACGTTATAGTTTGGCTCAATTCACCATTTCGATAACAATGTTTACCAAGTATCCTTTCCCCATCATCAAGAAAGCCTGGGAACTTGGTTTGATGAATGGACACATTCCACAGGAATATGGTGGAATGGGTTTGACGATCTTTGACAACTGTCTAATCACAGAAGAGTTGGCTTATGGGTGCACGGGAGTGCAAACTGCTATTGAAGCAAACTCTCTGGGGCAAATGCCTGTTATATTAGCTGGCAATGATGCACAGAAGAGAAAATATTTGGGAAGATTGATTGAAGAGCCTCTCATGTGTGCATACTGTGTTACAGAACCTGGAGCAGGCTCAGATGTGGCTGGCATCAAGACCCGAGCTGTGAAGATGGGAGATGAGTATGTTGTTAATGGGCAGAAGATGTGGATCACCAATGGTGGAAAGGCTAACTGGTACTTCCTCCTGGCTCGGA]
consensusID : consensus_1826#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence
[TTTCGATAACAATGTTTACCAAGGNNCTAAAAGCTAGTGTGCGGTCTGTAGTCCGTCTACAGAGTACCAGTATTGCTGCCCATCTCGGTTCCAATAGTGGCTCAGCATCCATCGGTTACTCCTTTGCTTTGACAGAGCAGCAAAAAGAGTTTCAACAGCTGTCAAGGAAGTTTGCTCGTGAGGAAATTGTGCCTGCTGCGCCTGCTTATGACAGGAGTGGNGAATATCCTTTCCCCATCATCAAGAAAGCCTGGGAACTTGGTTTGATGAATGGACACATTCCACAGGAATATGGTGGAATGGGTTTGACGATCTTTGACAACTGTCTAATCACAGAAGAGTTGGCTTATGGGTGCACGGGAGTGCATACTG]
[+] EMBL FR0064125 [TTTCGATAACAATGTTTACCAAGGNNCTAAAAGCTAGTGTGCGGTCTGTAGTCCGTCTACAGAGTACCAGTATTGCTGCCCATCTCGGTTCCAATAGTGGCTCAGCATCCATCGGTTACTCCTTTGCTTTGACAGAGCAGCAAAAAGAGTTTCAACAGCTGTCAAGGAAGTTTGCTCGTGAGGAAATTGTGCCTGCTGCGCCTGCTTATGACAGGAGTGGNGAATATCCTTTCCCCATCATCAAGAAAGCCTGGGAACTTGGTTTGATGAATGGACACATTCCACAGGAATATGGTGGAATGGGTTTGACGATCTTTGACAACTGTCTAATCACAGAAGAGTTGGCTTATGGGTGCACGGGAGTGCATACTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1826#0 GAAAAGTGGCAAGACTTTTTAACGTTATAGTTTGGCTCAATTCACCATTTCGATAACAAT 60
consensus_1826#1 -----------------------------------------------TTTCGATAACAAT 13
*************
consensus_1826#0 GTTTACCAAGTATCCTTTCCCCATCATCAAGAAAGCCTGGGAACTTGGTTTGATGAATGG 120
consensus_1826#1 GTTTACCAAGGNNCTAAAAGCTAGTGT----GCGGTCTG--TAGTCCGTCTACAGAGTAC 67
********** * * * * * *** * * ** * ** *
consensus_1826#0 ACACATT-CCACAGGAATATGGTGGAATGG--GTTTGACGATCTTTGACAACTGTCTAAT 177
consensus_1826#1 CAGTATTGCTGCCCATCTCGGTTCCAATAGTGGCTCAGCATCCATCGGTTACTCCTTTGC 127
*** * * * * * *** * * * * * * * *** *
consensus_1826#0 CACAGAAGAGTTGGCTTATGGGTGCACGGGAGTGCAAACTGCTATTGAAGCAAACT-CTC 236
consensus_1826#1 TTTGACAGAGCAGCA----------AAAAGAGTTTCAACAGCTGTCAAGGAAGTTTGCTC 177
**** * * **** *** *** * * * * * ***
consensus_1826#0 TGGGGCAAATGCCTGTTATATTAGCTGGCAATGATGCACAGAAGAGAAAATATTTGGGAA 296
consensus_1826#1 GTGAGGAAATTGTGCCTGCTGCGCCTGCTTATGACA-GGAGTGGNGAATATCCTTTCCCC 236
* * **** * *** **** ** * *** ** **
consensus_1826#0 GATTGATTGAAGAGCCTCTCATGTGTGCATACTGTGTTACAGAACCTGGAGCAGGCTCAG 356
consensus_1826#1 -ATCATCAAGAAAGCCTGGGAACTTGGTTTGATGAATG--GACACATTCCACAGG----A 289
** * ***** * * * * ** * ** * ****
consensus_1826#0 ATGTGGCTGGCATCAAGACCCGAGCTGTGAAGATGGGAGATGAGTATGTTGTTAATGGGC 416
consensus_1826#1 ATATGG-TGGAAT---------GGGTTTGACGATCTTTGACAACTGTCTAATCA-----C 334
** *** *** ** * * *** *** ** * * * * * * *
consensus_1826#0 AGAAGATGTGGATCACCAATG-GTGGAAAGGCTAACTGGTACTTCCTCCTGGCTCGGA 473
consensus_1826#1 AGAAGAGTTGGCTTATGGGTGCACGGGAGTGCATACTG-------------------- 372
****** *** * * ** ** * ** ****
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |