These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1826#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 473 fasta sequence [GAAAAGTGGCAAGACTTTTTAACGTTATAGTTTGGCTCAATTCACCATTTCGATAACAATGTTTACCAAGTATCCTTTCCCCATCATCAAGAAAGCCTGGGAACTTGGTTTGATGAATGGACACATTCCACAGGAATATGGTGGAATGGGTTTGACGATCTTTGACAACTGTCTAATCACAGAAGAGTTGGCTTATGGGTGCACGGGAGTGCAAACTGCTATTGAAGCAAACTCTCTGGGGCAAATGCCTGTTATATTAGCTGGCAATGATGCACAGAAGAGAAAATATTTGGGAAGATTGATTGAAGAGCCTCTCATGTGTGCATACTGTGTTACAGAACCTGGAGCAGGCTCAGATGTGGCTGGCATCAAGACCCGAGCTGTGAAGATGGGAGATGAGTATGTTGTTAATGGGCAGAAGATGTGGATCACCAATGGTGGAAAGGCTAACTGGTACTTCCTCCTGGCTCGGA] [+] EMBL BU806230 [GAAAAGTGGCAAGACTTTTTAACGTTATAGTTTGGCTCAATTCACCATTTCGATAACAATGTTTACCAAGTATCCTTTCCCCATCATCAAGAAAGCCTGGGAACTTGGTTTGATGAATGGACACATTCCACAGGAATATGGTGGAATGGGTTTGACGATCTTTGACAACTGTCTAATCACAGAAGAGTTGGCTTATGGGTGCACGGGAGTGCAAACTGCTATTGAAGCAAACTCTCTGGGGCAAATGCCTGTTATATTAGCTGGCAATGATGCACAGAAGAGAAAATATTTGGGAAGATTGATTGAAGAGCCTCTCATGTGTGCATACTGTGTTACAGAACCTGGAGCAGGCTCAGATGTGGCTGGCATCAAGACCCGAGCTGTGAAGATGGGAGATGAGTATGTTGTTAATGGGCAGAAGATGTGGATCACCA ] [+] EMBL BU808280 [ CAAGACTTTTTAACGTTATAGTTTGGCTCAATTCACCATTTCGATAACAATGTTTACCAAGTATCCTTTCCCCATCATCAAGAAAGCCTGGGAACTTGGTTTGATGAATGGACACATTCCACAGGAATATGGTGGAATGGGTTTGACGATCTTTGACAACTGTCTAATCACAGAAGAGTTGGCTTATGGGTGCACGGGAGTGCAAACTGCTATTGAAGCAAACTCTCTGGGGCAAATGCCTGTTATATTAGCTGGCAATGATGCACAGAAGAGAAAATATTTGGGAAGATTGATTGAAGAGCCTCTCATGTGTGCATACTGTGTTACAGAACCTGGAGCAGGCTCAGATGTGGCTGGCATCAAGACCCGAGCTGTGAAGATGGGAGATGAGTATGTTGTTAATGGGCAGAAGATGTGGATCACCAATGGTGGAAAGGCTAACTGGTACTTCCTCCTGGCTCGGA] consensusID : consensus_1826#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence [TTTCGATAACAATGTTTACCAAGGNNCTAAAAGCTAGTGTGCGGTCTGTAGTCCGTCTACAGAGTACCAGTATTGCTGCCCATCTCGGTTCCAATAGTGGCTCAGCATCCATCGGTTACTCCTTTGCTTTGACAGAGCAGCAAAAAGAGTTTCAACAGCTGTCAAGGAAGTTTGCTCGTGAGGAAATTGTGCCTGCTGCGCCTGCTTATGACAGGAGTGGNGAATATCCTTTCCCCATCATCAAGAAAGCCTGGGAACTTGGTTTGATGAATGGACACATTCCACAGGAATATGGTGGAATGGGTTTGACGATCTTTGACAACTGTCTAATCACAGAAGAGTTGGCTTATGGGTGCACGGGAGTGCATACTG] [+] EMBL FR0064125 [TTTCGATAACAATGTTTACCAAGGNNCTAAAAGCTAGTGTGCGGTCTGTAGTCCGTCTACAGAGTACCAGTATTGCTGCCCATCTCGGTTCCAATAGTGGCTCAGCATCCATCGGTTACTCCTTTGCTTTGACAGAGCAGCAAAAAGAGTTTCAACAGCTGTCAAGGAAGTTTGCTCGTGAGGAAATTGTGCCTGCTGCGCCTGCTTATGACAGGAGTGGNGAATATCCTTTCCCCATCATCAAGAAAGCCTGGGAACTTGGTTTGATGAATGGACACATTCCACAGGAATATGGTGGAATGGGTTTGACGATCTTTGACAACTGTCTAATCACAGAAGAGTTGGCTTATGGGTGCACGGGAGTGCATACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1826#0 GAAAAGTGGCAAGACTTTTTAACGTTATAGTTTGGCTCAATTCACCATTTCGATAACAAT 60 consensus_1826#1 -----------------------------------------------TTTCGATAACAAT 13 ************* consensus_1826#0 GTTTACCAAGTATCCTTTCCCCATCATCAAGAAAGCCTGGGAACTTGGTTTGATGAATGG 120 consensus_1826#1 GTTTACCAAGGNNCTAAAAGCTAGTGT----GCGGTCTG--TAGTCCGTCTACAGAGTAC 67 ********** * * * * * *** * * ** * ** * consensus_1826#0 ACACATT-CCACAGGAATATGGTGGAATGG--GTTTGACGATCTTTGACAACTGTCTAAT 177 consensus_1826#1 CAGTATTGCTGCCCATCTCGGTTCCAATAGTGGCTCAGCATCCATCGGTTACTCCTTTGC 127 *** * * * * * *** * * * * * * * *** * consensus_1826#0 CACAGAAGAGTTGGCTTATGGGTGCACGGGAGTGCAAACTGCTATTGAAGCAAACT-CTC 236 consensus_1826#1 TTTGACAGAGCAGCA----------AAAAGAGTTTCAACAGCTGTCAAGGAAGTTTGCTC 177 **** * * **** *** *** * * * * * *** consensus_1826#0 TGGGGCAAATGCCTGTTATATTAGCTGGCAATGATGCACAGAAGAGAAAATATTTGGGAA 296 consensus_1826#1 GTGAGGAAATTGTGCCTGCTGCGCCTGCTTATGACA-GGAGTGGNGAATATCCTTTCCCC 236 * * **** * *** **** ** * *** ** ** consensus_1826#0 GATTGATTGAAGAGCCTCTCATGTGTGCATACTGTGTTACAGAACCTGGAGCAGGCTCAG 356 consensus_1826#1 -ATCATCAAGAAAGCCTGGGAACTTGGTTTGATGAATG--GACACATTCCACAGG----A 289 ** * ***** * * * * ** * ** * **** consensus_1826#0 ATGTGGCTGGCATCAAGACCCGAGCTGTGAAGATGGGAGATGAGTATGTTGTTAATGGGC 416 consensus_1826#1 ATATGG-TGGAAT---------GGGTTTGACGATCTTTGACAACTGTCTAATCA-----C 334 ** *** *** ** * * *** *** ** * * * * * * * consensus_1826#0 AGAAGATGTGGATCACCAATG-GTGGAAAGGCTAACTGGTACTTCCTCCTGGCTCGGA 473 consensus_1826#1 AGAAGAGTTGGCTTATGGGTGCACGGGAGTGCATACTG-------------------- 372 ****** *** * * ** ** * ** **** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |