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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1838#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 559 fasta sequence
[CGCGGCTCCCGAGGTCCTCACACCGCCGACACGACCGCTCAACCCGGGCCCCGGCGTCCGTGCGCCTTCCCCGCCTTCGCTGGATCAGATCTGCGGACCCCGACCTGGAGTTTAGCGTACGCGATCCGGAGAATGTAAAAGTGCAACGGGAAGGAAGACGCACATCGGAGCTTTTTTCCCCCGTTGCTACATAAGACGAGAGCAAAGAAGGGTGGAAAGTCCGGAGGTACGGAATGGAACTACAGACCAACTTCTGCGAGTACACTTGGGAACAAAGGAACCCTTGTGCAGAGGCTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTAACTAAAAGTTTCCTATCTCTAAGTATTGTTTCTTAGTTTTGTGGTTAACCTTCCCCATGGAGATGTCTATTAAAAAAATTGTTCATCCAGGTGAGTGACCTGAGCAGTGCTGTTATAACAGGGTAACAAACACATGCTGAACGACACCTGCGTGGGCTGTCGCCGGCCAAATAACATTTGTCCTGAGCTGTCGCTGTGGCTGTATTGTATGAGAAAC]
[+] EMBL CA589218 [CGCGGCTCCCGAGGTCCTCACACCGCCGACACGACCGCTCAACCCGGGCCCCGGCGTCCGTGCGCCTTCCCCGCCTTCGCTGGATCAGATCTGCGGACCCCGACCTGGAGTTTAGCGTACGCGATCCGGAGAATGTAAAAGTGCAACGGGAAGGAAGACGCACATCGGAGCTTTTTTCCCCCGTTGCTACATAAGACGAGAGCAAAGAAGGGTGGAAAGTCCGGAGGTACGGAATGGAACTACAGACCAACTTCTGCGAGTACACTTGGGAACAAAGGAACCCTTGTGCAGAGGCTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTAACTAAAAGTTTCCTATCTCTAAGTATTGTTTCTTAGTTTTGTGGTTAACCTTCCCCATGGAGATGTCTATTAAAAAAATTGTTCATCCAGGTGAGTGACCTGAGCAGTGCTGTTATAACAGGGTAACAAACACATGCTGAACGACACCTGCGTGGGCTGTCGCCGGCCAAATAACATTTGTCCTGAG ]
[+] EMBL BU806180 [ CCTCACACCGCCGACACGACCGCTCAACCCGGGCCCCGGCGTCCGTGCGCCTTCCCCGCCTTCGCTGGATCAGATCTGCGGACCCCGACCTGGAGTTTAGCGTACGCGATCCGGAGAATGTAAAAGTGCAACGGGAAGGAAGACGCACATCGGAGCTTTTTTCCCCCGTTGCTACATAAGACGAGAGCAAAGAAGGGTGGAAAGTCCGGAGGTACGGAATGGAACTACAGACCAACTTCTGCGAGTACACTTGGGAACAAAGGAACCCTTGTGCAGAGGCTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTAACTAAAAGTTTCCTATCTCTAAGTATTGTTTCTTAGTTTTGTGGTTAACCTTCCCCATGGAGATGTCTATTAAAAAAATTGTTCATCCAGGTGAGTGACCTGAGCAGTGCTGTTATAACAGGGTAACAAACACATGCTGAACGACACCTGCGTGGGCTGTCGCCGGCCAAATAACATTTGTCCTGAGCTGTCGCTGTGGCTGTATTGTATGAGAAAC]
consensusID : consensus_1838#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence
[TCCACAGCCGCGGCTCCCGAGGTCCTCACACCGCCGACACGACCGCTCAACCCGGGCCCCGGCGTCCGTGCGCCTTCCCCGCCTTCGCTGGATCAGATCTGCGGACCCCGACCTGGAGTTTAGCGTACGCGATCCGGAGAATGTAAAAGTGCAACGGGAAGGAAGACGCACATCGGAGCTTTTTTCCCCCGTTGCTACATAAGACGAGAGCAAAGAAGGGTGGAAAGTCCGGAGATTAGGCTGGATTTCTGACTCCACACCTCTGCAAACATGGCACATCGATCGCAGTCCTCTTCCATCGGCGACAACCCCCTCGACCCCAACTACCTCCCCCCGCATTACCGCGAGGAGTACCGCCTCGCTATCGACGCGTTGATAGAAAATGACACACAGGGCTACTATGAATTCCTCCAGACTGAAGATGTGGTTAGTTTTCTGGCGCAGCCTGAGATTGAGTTGATCAAAAAC]
[+] EMBL CA591147 [TCCACAGCCGCGGCTCCCGAGGTCCTCACACCGCCGACACGACCGCTCAACCCGGGCCCCGGCGTCCGTGCGCCTTCCCCGCCTTCGCTGGATCAGATCTGCGGACCCCGACCTGGAGTTTAGCGTACGCGATCCGGAGAATGTAAAAGTGCAACGGGAAGGAAGACGCACATCGGAGCTTTTTTCCCCCGTTGCTACATAAGACGAGAGCAAAGAAGGGTGGAAAGTCCGGAGATTAGGCTGGATTTCTGACTCCACACCTCTGCAAACATGGCACATCGATCGCAGTCCTCTTCCATCGGCGACAACCCCCTCGACCCCAACTACCTCCCCCCGCATTACCGCGAGGAGTACCGCCTCGCTATCGACGCGTTGATAGAAAATGACACACAGGGCTACTATGAATTCCTCCAGACTGAAGATGTGGTTAGTTTTCTGGCGCAGCCTGAGATTGAGTTGATCAAAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1838#0 --------CGCGGCTCCCGAGGTCCTCACACCGCCGACACGACCGCTCAACCCGGGCCCC 52
consensus_1838#1 TCCACAGCCGCGGCTCCCGAGGTCCTCACACCGCCGACACGACCGCTCAACCCGGGCCCC 60
****************************************************
consensus_1838#0 GGCGTCCGTGCGCCTTCCCCGCCTTCGCTGGATCAGATCTGCGGACCCCGACCTGGAGTT 112
consensus_1838#1 GGCGTCCGTGCGCCTTCCCCGCCTTCGCTGGATCAGATCTGCGGACCCCGACCTGGAGTT 120
************************************************************
consensus_1838#0 TAGCGTACGCGATCCGGAGAATGTAAAAGTGCAACGGGAAGGAAGACGCACATCGGAGCT 172
consensus_1838#1 TAGCGTACGCGATCCGGAGAATGTAAAAGTGCAACGGGAAGGAAGACGCACATCGGAGCT 180
************************************************************
consensus_1838#0 TTTTTCCCCCGTTGCTACATAAGACGAGAGCAAAGAAGGGTGGAAAGTCCGGAGGTACGG 232
consensus_1838#1 TTTTTCCCCCGTTGCTACATAAGACGAGAGCAAAGAAGGGTGGAAAGTCCGGAGAT-TAG 239
****************************************************** * *
consensus_1838#0 AATGGAACTACAGACCAACTTCTGCGAGTACACTTGGGAACAAAGG-AACCCTTGTGCAG 291
consensus_1838#1 GCTGGATTTCTGACTCCACACCTCTGCAAACATGGCACATCGATCGCAGTCCTCTTCCAT 299
**** * * ** ** * *** * * * * * *** * **
consensus_1838#0 AGGCTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTAACTAAAAGT 351
consensus_1838#1 CGGCGACAACCCCCTCGACCCCA---------ACTACCTCCCCCCGCATTACCGCGAGGA 350
*** * * ** * * * * * * * **** * * *
consensus_1838#0 TTCCTATCTCTAAGTATTGTTTCTTAGTTTTGTGGTTAACCTTCCCCATGGAGATGTCTA 411
consensus_1838#1 GTACCGCCTC--GCTATCGACGCGTTG----ATAGAAAATGACACACAGGG------CTA 398
* * *** *** * * * * * * ** * ** ** ***
consensus_1838#0 TTAAAAAAATTGTTCATCCAGGTGAGTGACCTGAGCAGTGCTGTTATAACAGGGTAACAA 471
consensus_1838#1 CTATGAA-----TTCCTCCAGACTGAAGATGTGGTTAGT-TTTCTGGCGCAGCCTGAGAT 452
** ** *** ***** ** ** *** * * *** * * *
consensus_1838#0 ACACATGCTGAACGACACCTGCGTGGGCTGTCGCCGGCCAAATAACATTTGTCCTGAGCT 531
consensus_1838#1 TGAGTTGATCAAAAAC-------------------------------------------- 468
* ** * ** **
consensus_1838#0 GTCGCTGTGGCTGTATTGTATGAGAAAC 559
consensus_1838#1 ----------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |