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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1843#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 596 fasta sequence
[TGACAGGGAGGATCCCGGAAGGCTGGTTTTTCCCGAGCAAGGCCACAGAGGCGACATCCGCAAGTCCAGCAGAGACCCGCAAAAATGACGCAGAATTCCACCCTGGAAAATGCCATCAGCACACTGGTCAACCAGTTCCACTCAGCTTCAGCCGACAATGGTGCCACGCTGAAGAAGGATGAGTTCAGAAGTCTTCTGTCTTCTCAGTTGCCTAATCTGGCCAAGGGGTTTGGAACA-GACCAAGGCTTCGGTGAAATCCTGCGCAATATGGGTGTCGGTGATGGCGAGGGCATTTCTTTCAAGCATTTCTGGAATTTAATCCAGTCCTTGGCCTCCAAACAGTACGGCACTTTGAGCAGCCAGATGGGTTCATCATGCAACTGCATTCTCCTGTGAAGAGAAAGAAATGGAAGAGACGCATATCTTTGTCCTCCTGAAGGCTTACGACATGCAGATAGTGCAACTTTTTTACCATTAACCTTTGAAATGATAAAACCACTGACAGGTTTGCTCTTCTTGCTCATCGCACTTGATCTTCTTAAGTTGATCCCTAAATTTAACACCATCACATTGTCTCAGATCACATCTTTCCATCT]
[+] EMBL CA846771 [TGACAGGGAGGATCCCGGAAGGCTGGTTTTTCCCGAGCAAGGCCACAGAGGCGACATCCGCAAGTCCAGCAGAGACCCGCAAAAATGACTCAGAATTCCACCCTGGAAAATGCCATCAGCACACTGGTCAACCAGTTCCACTCAGCTTCAGCCGACAATGGTGCCACGCTGAAGAAGGATGAGTTCAGAAGTCTTCTGTCTTCTCAGTTGCCTAATCTGGCCAAGGGGTTTGGAACATCATTTAGGCTTCGGTGAAATCCTGCGCAATATGGGTGTCGGTGATGGCGAGGGCATTTCTTTCAAGCATTTCTGGAATTTAATCCAGTCCTTGGCCTCCAAACAGTACGG ]
[+] EMBL BU808261 [ GGCGACATCCGCAAGTCCAGCAGAGACCCGCAAAAATGACGCAGAATTCCACCCTGGAAAATGCCATCAGCACACTGGTCAACCAGTTCCACTCAGCTTCAGCCGACAATGGTGCCACGCTGAAGAAGGATGAGTTCAGAAGTCTTCTATCTTCTCAGTTGCCTAATCTGGCCAAGGGGTTTGGAACA GACCAAGGCTTCGGTGAAATCCTGCGCAATATGGGTGTCGGTGATGGTGAGGGCATTTCTTTCAAGCATTTCTGGAATTTAATCCAGTCCTTGGCCTCCAAACAGTACGGCACTTTGAGCAGCCAGATGGGTTCATCATGCAACTGCATTCTCCTGTGAAGAGAAAGAAATGGAAGAGACGCATATCTTTGTCCTCCTGAAGGCTTACGACATGCAGATAGTGCAACTTTTTTACCATTAACCTTTGAAATGATAAAACCACTGACAGGTTTGCTCTTCTTGCTCATCGCACTTGATCTTCTTAAGTTGATCCCTAAATTTAACACCATCACATTGTCTCAGATCACATCTTTCCATCT]
consensusID : consensus_1843#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence
[CCACAGAGGCGACATCCGCAAGTCCAGCAGAGACCCGCAAAAATGACGCAGGTAAGAAACCATCCCTAATCCGCTGCTAAAAGAAGAAGAAGAAGCCCGCAGCTGAGAGTCCAGCTCGACTTGCTCAATCTGCTGTGGCTTTTTGTAACTTTGAAGCACTCCGATTTCTCCAGGGTTCAAGAACTTCAGAGCAGTTTTTCTTCTCCTCAAATCCGGATCTGTCTGTCTGTCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATTGTGCTCATTTTCTTGTTCTCCAGCTGACTTGTGAAGTCTCATCTTTCAGAATTCCTCCATCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC]
[+] EMBL CA590264 [CCACAGAGGCGACATCCGCAAGTCCAGCAGAGACCCGCAAAAATGACGCAGGTAAGAAACCATCCCTAATCCGCTGCTAAAAGAAGAAGAAGAAGCCCGCAGCTGAGAGTCCAGCTCGACTTGCTCAATCTGCTGTGGCTTTTTGTAACTTTGAAGCACTCCGATTTCTCCAGGGTTCAAGAACTTCAGAGCAGTTTTTCTTCTCCTCAAATCCGGATCTGTCTGTCTGTCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATTGTGCTCATTTTCTTGTTCTCCAGCTGACTTGTGAAGTCTCATCTTTCAGAATTCCTCCATCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1843#0 TGACAGGGAGGATCCCGGAAGGCTGGTTTTTCCCGAGCAAGGCCACAGAGGCGACATCCG 60
consensus_1843#1 ------------------------------------------CCACAGAGGCGACATCCG 18
******************
consensus_1843#0 CAAGTCCAGCAGAGACCCGCAAAAATGACGCAGAATTCCACCCTGGAAAATGCCATCAGC 120
consensus_1843#1 CAAGTCCAGCAGAGACCCGCAAAAATGACGCAGG--------TAAGAAACCATCCCTAAT 70
********************************* **** * *
consensus_1843#0 ACACTGGTCAACCAGTTCCACTCAGCTT-CAGCCGACAATGGTGCCACGCTGAAGAAGGA 179
consensus_1843#1 CCGCTGCTAAAAGAAGAAGAAGAAGCCCGCAGCTGAGAGTCCAGCTCGACTTGCTCA--A 128
* *** * ** * * *** **** ** * * ** ** * *
consensus_1843#0 TGAGTTCAGAAGTCTTCTGTCTTCTCAGTTGCCTAATCTGGCCAAGGGGTTTGGAACAGA 239
consensus_1843#1 TCTGCTGTGGCTTTTTGTAACTTTGAAGCACTCCGATTTCTCCAGGG---TTCAAGAACT 185
* * * * * ** * *** ** * ** * *** ** ** * *
consensus_1843#0 CCAAGGCTTCGGTGAAATCCTGCGCAATATGGGTGTCGGTGATGGCGAGGGCATTTCTTT 299
consensus_1843#1 TCAGAGCA--GTTTTTCTTCTCCTCAA-ATCCGGATCTGTCTGTCTGTCTGTCTGTCTGT 242
** ** * * * ** * *** ** * ** ** * * * *** *
consensus_1843#0 CAAGCATTTCTGGAATTTAATCCAGTCCTTGGCCTCCAAACAGTACGGCACTTTGAGCAG 359
consensus_1843#1 CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT 302
* * * * ** ** * * * * * * * * * * *
consensus_1843#0 CCAGATGGGTTCATCATGCAACTGCATTCTCCTGTGAAGAGAAAGAAATGGAAGAGACGC 419
consensus_1843#1 CTA--TCTATCTATCATTGTGCT-CATTTTCTTGTTCTCCAGCTGACTTGTGA-AGTCTC 358
* * * * ***** ** **** ** *** ** ** * ** * *
consensus_1843#0 ATATCTTTGTCCTCCTGAAGGCTTACGACATGCAGATAGTGCAACTTTTTTACCATTAAC 479
consensus_1843#1 ATCTTTCAGAATTCCTCCATCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT 418
** * * * **** * ** * * * * **** ** * *
consensus_1843#0 CTTTGAAATGATAAAACCACTGACAGGTTTGCTCTTCTTGCTCATCGCACTTGATCTTCT 539
consensus_1843#1 CTTT---------------CTTTCTTTCTTTCTTTCTTTCTTTCTTTC------------ 451
**** ** * ** ** * ** * * *
consensus_1843#0 TAAGTTGATCCCTAAATTTAACACCATCACATTGTCTCAGATCACATCTTTCCATCT 596
consensus_1843#1 ---------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |