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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1844#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 698 fasta sequence
[TCTGCACACGAAAGCGCAGCTCGCCTGGACCTTGTTTACTTCTGTCGGTGCGGGTTCCTCTCAGCGCAGGCGGATTATGTCAGAATTCCTCCTCTGAGAAAAACTTCAGCAGCAGCTTTGGGATTTATCTAAGCGGGAAGCTCGAGTTGGTATTTTGAGGATCTCCGTCGGATGTGCAGGAAAAATCATTTAGACGCGTTTGTTTCTGAGTCTGATTTTTACGCCCAGCTCTGATGACCAGCTTCTGAAATGTATCATCCACCCAGACCACCGAACCGACCCGATGGATGGCCCCCCGTAATCGCAACACGAGCAGCCGAAGGTGCCCCCGGACAAACCTCCCGTTCAGTAAACGGCGGTGAACAGAGTCCCACCCGAACAGGTGAACCGAACCAGATGCCCCGACGCCGAGTCCCCAGCTCCCCTTTCGACAGTCTAGGCGTGTTTCAGACAAGGACAATCTTCGCTCTCCCTCGACGCCGTTCCAGTGGATATTTCTCCTCCGACAGCGACTCGATGCCCAACTCTCCGCTGTCGCCGAGGCCGCCGACGATTGATAGTGCGACGCAGACACCGAGCCCGAGCGGCCAAGTGATGCTGCACGCTCTGGAGCGCATGGCTCAAAGGTTCGGAGGAGTCGGAGCACGGGCGCAGCAGTGGCACGGTGAGCACATGCAGCCTGCAGTAGTGTCCATGGA]
[+] EMBL CA591121 [TCTGCACACGAAAGCGCAGCTCGCCTGGACCTTGTTTACTTCTGTCGGTGCGGGTTCCTCTCAGCGCAGGCGGATTATGTCAGAATTCCTCCTCTGAGAAAAACTTCAGCAGCAGCTTTGGGATTTATCTAAGCGGGAAGCTCGAGTTGGTATTTTGAGGATCTCCGTCGGATGTGCAGGAAAAATCATTTAGACGCGTTTGTTTCTGAGTCTGATTTTTACGCCCAGCTCTGATGACCAGCTTCTGAAATGTATCATCCACCCAGACCACCGAACCGACCCGATGGATGGCCCCCCGTAATCGCAACACGAGCAGCCGAAGGTGCCCCCGGACAAACCTCCCGTTCAGTAAACGGCGGTGAACAGAGTCCCACCCGAACAGGTGAACCGAACCAGATGCCCCGACGCCGAGTCCCCAGCTCCCCTTTCGACAGTCTAGGCGTGTTTCAGACAAGGACAATCTTCGCTCTCCCTCGACGCCGTTCCAGTGGATATTTCTCCTCCGACAGCGACTCGATGCCCAACTCTCCGCTGTCGCCGAGGCCGCCGACGATTGATAGTGCGACGCAGACACCGAGCCCGAGCGGCCAAGTGATGCTGCAC ]
[-] EMBL CA589198 [ CCGAACCGACCCGATGGATGGCCCCCCGTAATTGCAACACGAGCAGCCGAAGGTGCCCCCGGACAAACCTCCCGTTCAGTAAACGGCGGTGAACAGAGTCCCACCCGAACAGGTGAACCGAACCAGATGCCCCGACGCCGAGTCCCCAGCTCCCCTTTCGACAGTCTAGGCGTGTTTCAGACAAGGACAATCTTCGCTCTCCCTCGACGCCGTTCCAGTGGATATTTCTCCTCCGACAGCGACTCGATGCCCAACTCTCCGCTGTCGCCGAGGCCGCCGACGATTGATAGTGCGACGCAGACACCGAGCCCGAGCGGCCAAGTGATGCTGCACGCTCTGGAGCGCATGGCTCAAAGGTTCGGAGGAGTCGGAGCACGGGCGCAGCAGTGGCACGGTGAGCACATGCAGCCTGCAGTAGTGTCCATGGA]
consensusID : consensus_1844#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence
[GCGGAGGGAAGGAAGGAAAGACTCTGCACACGAAAGCGCAGCTCGCCTGGACCTTGTTTACTTCTGTCGGTGCGGGTTCCTCTCAGCGCAGGCGGATTATGTCAGAATTCCTCCTCTGAGAAAAACTTCAGCAGCAGCTTTGGGATTTATCTAAGCGGGAAGCTCGAGTTGGTATTTTGAGGATCTCCGTCGGATGTGCAGGAAAAATCATTTAGACGCGTTTGTTTCTGAGTCTGATTTTTACGCCCAGCTCTGATGACCAGCTTCTGAAATGTATCATCCACCCAGGGCACGCTTTCCACAGCTCTAGCAGGTCACAGAGTGCAGCAGTGGAGATGCAAGAGGAGGCAATCGGGAGAGAGCTCCGTCGCATTGGAGACGACTTCAACAGACAACTTCTCTTAAGGAGGATGGGCCGTTTGCTGCACATCCCCCAGGAGCCCATCGTGCTGCTGTGCGTGAGCGTCTTTCTCCTTGTGATTGGAAGGATAATCTACCTGCAAGGCAGCGCAGACAGTCAGCACCACTCTCAGGTTTAGCTAGCAAAAATAGCATTTCTATTTGATGATGCATCCATCTCTACTGCTCAGAGGCTGAATATGGACCTTGCTTTTCCAAGACCTCACC]
[+] EMBL BU808254 [GCGGAGGGAAGGAAGGAAAGACTCTGCACACGAAAGCGCAGCTCGCCTGGACCTTGTTTACTTCTGTCGGTGCGGGTTCCTCTCAGCGCAGGCGGATTATGTCAGAATTCCTCCTCTGAGAAAAACTTCAGCAGCAGCTTTGGGATTTATCTAAGCGGGAAGCTCGAGTTGGTATTTTGAGGATCTCCGTCGGATGTGCAGGAAAAATCATTTAGACGCGTTTGTTTCTGAGTCTGATTTTTACGCCCAGCTCTGATGACCAGCTTCTGAAATGTATCATCCACCCAGGGCACGCTTTCCACAGCTCTAGCAGGTCACAGAGTGCAGCAGTGGAGATGCAAGAGGAGGCAATCGGGAGAGAGCTCCGTCGCATTGGAGACGACTTCAACAGACAACTTCTCTTAAGGAGGATGGGCCGTTTGCTGCACATCCCCCAGGAGCCCATCGTGCTGCTGTGCGTGAGCGTCTTTCTCCTTGTGATTGGAAGGATAATCTACCTGCAAGGCAGCGCAGACAGTCAGCACCACTCTCAGGTTTAGCTAGCAAAAATAGCATTTCTATTTGATGATGCATCCATCTCTACTGCTCAGAGGCTGAATATGGACCTTGCTTTTCCAAGACCTCACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1844#0 ----------------------TCTGCACACGAAAGCGCAGCTCGCCTGGACCTTGTTTA 38
consensus_1844#1 GCGGAGGGAAGGAAGGAAAGACTCTGCACACGAAAGCGCAGCTCGCCTGGACCTTGTTTA 60
**************************************
consensus_1844#0 CTTCTGTCGGTGCGGGTTCCTCTCAGCGCAGGCGGATTATGTCAGAATTCCTCCTCTGAG 98
consensus_1844#1 CTTCTGTCGGTGCGGGTTCCTCTCAGCGCAGGCGGATTATGTCAGAATTCCTCCTCTGAG 120
************************************************************
consensus_1844#0 AAAAACTTCAGCAGCAGCTTTGGGATTTATCTAAGCGGGAAGCTCGAGTTGGTATTTTGA 158
consensus_1844#1 AAAAACTTCAGCAGCAGCTTTGGGATTTATCTAAGCGGGAAGCTCGAGTTGGTATTTTGA 180
************************************************************
consensus_1844#0 GGATCTCCGTCGGATGTGCAGGAAAAATCATTTAGACGCGTTTGTTTCTGAGTCTGATTT 218
consensus_1844#1 GGATCTCCGTCGGATGTGCAGGAAAAATCATTTAGACGCGTTTGTTTCTGAGTCTGATTT 240
************************************************************
consensus_1844#0 TTACGCCCAGCTCTGATGACCAGCTTCTGAAATGTATCATCCACCCAGACCACCGAACCG 278
consensus_1844#1 TTACGCCCAGCTCTGATGACCAGCTTCTGAAATGTATCATCCACCCAGGGCAC---GCTT 297
************************************************ *** *
consensus_1844#0 ACCCGATGGATGGCCCCCCGTAATCGCAACACG-AGCAGCCGAAGGTGCCCCCGGACAAA 337
consensus_1844#1 TCC------ACAGCTCTAGCAGGTCACAGAGTGCAGCAGT-GGAGATGCA---AGAGGAG 347
** * ** * ** ** * ***** * ** *** ** *
consensus_1844#0 CCTCCCGTTCAGTAAACGGCGGTGAACAGAGTCCCACCCGAACAGGTGAACCGAACCAGA 397
consensus_1844#1 GCAATCGGG-AGAGAGCTCCGTCGCATTGGAGACGACTTCAACAGACAACTTCTCTTAAG 406
* ** ** * * ** * * * * ** ***** * *
consensus_1844#0 TGCCCCGACGCCGAGTCCCCAGCTCCCCTTTCGACAGTCTAGGCGTGTTTCAGACAAGGA 457
consensus_1844#1 GAG---GATGGGCCGTTTGCTGCACATCCCCCAGGAGCCCAT-CGTGCTGCTGT---GCG 459
** * ** * ** * * * ** * * **** * * * *
consensus_1844#0 CAATCTTCGCTCTCCCTCGACGCCGTTCCAGTGGATATTTCTCCTCCGA--CAGCG-ACT 514
consensus_1844#1 TGAGCGTCTTTCTCCTT-----GTGATTGGAAGGATAATCTACCTGCAAGGCAGCGCAGA 514
* * ** ***** * * * ***** * *** * * ***** *
consensus_1844#0 CGAT--GCCCAACTCTCCGCTGTCGCCGAGGCCGCCGACGATTGATAGTGCGACGCAGAC 572
consensus_1844#1 CAGTCAGCACCACTCTCAGGTTTAGCTAGCAAAAATAGCATTT--CTATTTGATG-ATGC 571
* * ** * ****** * * * ** * ** * ** * * *
consensus_1844#0 ACCGAGCCCGAGCGGCCAAGTGATGCTGCACGCTCTGGAGCGCATGGCTCAAAGGTTCGG 632
consensus_1844#1 ATCCATCTCTACTGCTCA---GAGGCTGAATA---TGGACCTTGCTTTTCCAAGACCTCA 625
* * * * * * * ** ** **** * **** * ** ***
consensus_1844#0 AGGAGTCGGAGCACGGGCGCAGCAGTGGCACGGTGAGCACATGCAGCCTGCAGTAGTGTC 692
consensus_1844#1 CC---------------------------------------------------------- 627
consensus_1844#0 CATGGA 698
consensus_1844#1 ------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |